mRNA_L-elsbetiae_contig6485.15164.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6485.15164.1
Unique NamemRNA_L-elsbetiae_contig6485.15164.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6485.15164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6485contigL-elsbetiae_contig6485:1359..7190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size846
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6485.15164.1prot_L-elsbetiae_contig6485.15164.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6485 2274..7024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.5599794-UTR-L-elsbetiae_contig6485:1358..14461622816715.5599794-UTR-L-elsbetiae_contig6485:1358..1446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6485 1359..1446 +
1691683760.7524514-UTR-L-elsbetiae_contig6485:1358..14461691683760.7524514-UTR-L-elsbetiae_contig6485:1358..1446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6485 1359..1446 +
1622816715.571064-UTR-L-elsbetiae_contig6485:2224..22731622816715.571064-UTR-L-elsbetiae_contig6485:2224..2273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6485 2225..2273 +
1691683760.761393-UTR-L-elsbetiae_contig6485:2224..22731691683760.761393-UTR-L-elsbetiae_contig6485:2224..2273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6485 2225..2273 +
1622816715.618801-UTR-L-elsbetiae_contig6485:7024..71901622816715.618801-UTR-L-elsbetiae_contig6485:7024..7190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6485 7025..7190 +
1691683760.8027034-UTR-L-elsbetiae_contig6485:7024..71901691683760.8027034-UTR-L-elsbetiae_contig6485:7024..7190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6485 7025..7190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.5812855-CDS-L-elsbetiae_contig6485:2273..23291622816715.5812855-CDS-L-elsbetiae_contig6485:2273..2329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6485 2274..2329 +
1691683760.769289-CDS-L-elsbetiae_contig6485:2273..23291691683760.769289-CDS-L-elsbetiae_contig6485:2273..2329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6485 2274..2329 +
1622816715.5940948-CDS-L-elsbetiae_contig6485:3008..31201622816715.5940948-CDS-L-elsbetiae_contig6485:3008..3120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6485 3009..3120 +
1691683760.777935-CDS-L-elsbetiae_contig6485:3008..31201691683760.777935-CDS-L-elsbetiae_contig6485:3008..3120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6485 3009..3120 +
1622816715.6054852-CDS-L-elsbetiae_contig6485:6649..70241622816715.6054852-CDS-L-elsbetiae_contig6485:6649..7024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6485 6650..7024 +
1691683760.7888267-CDS-L-elsbetiae_contig6485:6649..70241691683760.7888267-CDS-L-elsbetiae_contig6485:6649..7024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6485 6650..7024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6485.15164.1

>prot_L-elsbetiae_contig6485.15164.1 ID=prot_L-elsbetiae_contig6485.15164.1|Name=mRNA_L-elsbetiae_contig6485.15164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MGFTIVDGSGTEPGVVTGTPSDAVDIQTKVLVFHQKHGQNRRAARLGQGQ
FRQRSRAQQQQQQLSSGTIDQNSASTAQSDLSQKPFIDRLSQLRGYPRSG
AGAEQSSRGSSRRGGNSARSERSDRSGGIPAAASRCGVYEGRGQHHHAPP
PRSRAQVRAELGQQDSRLGARQETSVAEQG*
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mRNA from alignment at L-elsbetiae_contig6485:1359..7190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6485.15164.1 ID=mRNA_L-elsbetiae_contig6485.15164.1|Name=mRNA_L-elsbetiae_contig6485.15164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5832bp|location=Sequence derived from alignment at L-elsbetiae_contig6485:1359..7190+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAACGCCGCCACGCTGTTTACGATGGAAGCGGCTAAGGAGCTTGGAT
CTGTCCAAGGAAGACGAAGGCATTGTGGAGATCTGCAGGCAAGACTAAGA
GGGGGGCATCATGGCATAAATGACAACAAAAGAGATGCTCTCCACAGACT
ATTTTCACCTAAACCTTGCAAACTCTGGCCCCTCAACGTTTGAAGCTCCA
AAAGAGCTGTATACCATAACCCCAACGACATCAAACAGCCCCAGTATATC
GGGAATTTAACCATTTTCCTTGGCATGTGTGCTCCTGTTTTCCGGGATTG
GTGTGTTGTATTGCTGTGTTGTTGTTGTTTCGTTTTTTTTGTCAACGCAG
CACGCCTCATGAGACTGAACATTCGGTTAATCTTACGGTTAATCCTGGAG
TGGACAAGAGCTATCCAGACGGATCTATAGCTCATTCCGAATGCTATGTC
TGACAATCTCAACGATTGCTTGACAACTGGCCCTCTTGCATTTCGAAGCG
AGAAAAGGGATTTCGTACTGTCACAGCAAACGTGTCATGTGCTAGTCAAA
AACAATAATGTGTCTTGCCTTTTTTATTTGTTATTGTTTGTCCGCCCTGC
TTCAGAACACTTTCAGCCAATTGGTTAGGTTCGTTTGAGGAAGGGGGCTA
CGGCTTAGTACGCAGGTTGCGCGGGCCGTTGGTTTCACGGTGATGAGACA
CTGGTGTTTTCCACCCCCTTCTTCCTTTCTGTATCTCATTTCGGGGAGCA
TCGACAAGAAAGGTGCCCGGAGCGCTCGGCGAAGGGGGATGTAAAGTCCT
ACTTGCCGACCCCCTCTACCCCCTCCTTTTTTATGCTCGTATTTCAATCT
TGTCTTCTTCTTACAGCGCGAAGGCTATCGACATCATCTCTTCACAGGAG
ACCACGACCACCGAGATGGGCTTCACGATCGTCGATGGCAGTGGCACGGA
ACCGGGTGTTGTTACTGGCACGTGAGTAGCAAATGCTCGACGAGGTATCG
ACGTCTGTTTGGCCAAAGCACCTACTGTACCATGATGCAGCAGTCCAGTG
GCTGTTCCTGTTGCAAGACGCACATATCAAAGTATGCCACCCAAACAAAT
ATGGTATGTAGTGTTTCATTCTCGAGATTTTCGGTTGGGCTCTACGAAAA
ATTAAAAAAATCGGTTGATGTGGTGCAGCAACTGGAGTAGGTTAGAGCAG
TCGACACTCTGCGAAGCTCTGCGTGGGTGTGCCATTGTCTCTGTGGCTGT
CTTTTTTGGTCTGCTTGGCGGTGCTACTGCATACTGTTTTTGTTGCATGG
CTGAAGTAGAAAGCATCAAACGCGTTGTCTGAGACGAAAAGGTGTACGCA
CGCATGGGGGTCAGTAGAGTGAGCTAGTCTACTGCATGTAACTGGGCTGA
GGTTCCGGTTTGAAGTATCGCCGTTGGAGGGACGAAGGAGAAGCTGGCGA
ACCAGGGACCTTGCCTGTGTCACGTTATCTGTGTGCGATTAAGGCCACCT
AGTTTTGTAGCATGCCTGACCGCTGCTCCACTGTTGTCGATGGAGAGCTG
ACTCGTGTGAGGTTGATCGAGAGTCGGCGGTAAGATACTCTCCTTGATTT
TCTTTGCTTTTGTCCCGTCCTTGACGTTCGCATATCTTGCGCTTTTGCAG
CCCGTCAGACGCGGTTGACATTCAGACGAAGGTTCTGGTATTCCATCAGA
AGCACGGGCAAAACCGTCGGGCGGCGCGGCTGGGGCAGGGCCAGTTTCGC
CAGAGAAGCAGGGTGAGGGCAGCAGAAAATTGCGGGATTGATCTCGCTCA
TGGTACTCTTTGAAGTTGTGATGCGATTTTTCCCTTCTATACGCTTTTTC
CCTGCTTGTACTAAAAAAGCAGAAGCTGCGAGTGTTTCTATTCCGTATCA
CTTGTCTAGGTAGCTGAAACATATGTATGTGGGCTTGGGCTATATACATG
TATCTAGCGAGGGTGTCCGCGTACTTTGTACGTGTTGAGACCAAGGTTTC
TCACCATGGATAAGCAGCGTTATTGCAATTCTAGTTTGAAGGAGGCGCAA
AATTGTCCAAAAACGAGCTTCTTTTTGGCCAGTCCTCGCCGCTGAGTGCA
GTTTTTCGGAGGAAGAAGGGTTAGGCCTATGGCCCTGATGCTCATTGATG
GTGCAATAGGAAGAACGAAGCGAATCGATGCTCTGGCCGCGGAGTATGGA
GTGTTTTGGGTGACCAAAAAAGTACGACGGGGCCTCGCAGGCAGAAGTCA
CGCTCATACAAGACATCCCCACCAAAAAGCACCGTCCTCTGGAGGCGCGC
ACCGGCACCGTGCGCCAGCCCCAGGACTTGACAATCTTCATTCAAGACAA
AATAAATCACACGCGATGCCATCTACTGCTCATAACAAGAGTCAGTGCGG
ATTTCAGACCCTCAATCGCTTTGTAAGTGTCGAGTCAGAGCTGCCTCCGA
ACAAACTTGGAGGGGCTCGGCGAGACCGGAAGCAACAGACAGCAGCAGCT
GTAGTTAGTGTCCTACATGACCATTTGCGGTATTAGCGGGTATTCTGCAC
ATCTGAGACCCTACTCTTGCCGTAGCGCGAAGTCTCGTCGTGGATTAAGA
ACCGCTGCTTCTGCGCCCACATCGCCCAAAAATCTTGCTACGCGTCTGCG
AACTGGCTCTCTCCTCTCTCTAATCTCAGCACCAAAGGTTGTGACACCGA
GAGTTAGTGTCCTGCATTGATTGACGCCCAGTTTTTTGTCCTACCATGGA
GCCAATGACCTTATCTACACATCCTCTCACTATCGACTTGGATTAAATCC
CCGTCGCTGAGCTTTCCGCCTCTCCGTGTCGCCTTGCCACCCCAGTACAA
TGCAGACCAGTGTTTAGGGGGGTACGCAAACGATGGTACCCTCCATAACT
GTGTGCCCCCGCCCGCACATGCGCCTCCTTAGATTTGAATTGTCGTAACA
CTTGGCACATTTCAAACTCGAATCCCGCTTCCCGCTTTACCGAACAGCTC
AAAATACGGGATCTTCCAGTTCCTGCTTCATTTGCCGGGATTGCACAGAA
ACCTCATTTATGTTTCTGTAATGGCGAGGCGTCCCGCCAGCACAATTATT
GTCAGATTGCGGTCCCCCTGCCAGCACATTCTTTCAGGTCTTGTATTTTG
GTCCGATGGGAAAAGCTATTTTCTCAAGCAATACCGACCGTGGCGAGTTG
ATGACAGGATCCCAGCAACCTCTACGCACGCTGATGGGCTGGGTCGGTGG
CAAGCATGCTTTAAAAAAATAATTTGTCGGGTGTCTTTGGGTCGAAAACG
GCAATCCACCGCGCGGCCGTTCTGGAGGGAACAGCAGCAGCAGACAAAAC
AATCAAGTTCTAGCTCCCTGGACCACGTATCAAGGTCTAGCTAAGAAATA
TATGCTCTCCATTAACTGCTGTTTCTCGGGTGCTGGGCTTATATAGCAGT
GCGTTTATTCAATCGATAGAAGAAGCGTCCTCATGTGCCCAACCGCTGCA
TTTTTTCCAAAAAAATTAAACGTGGAGACTCTTTTGTATCCAACACCACC
ACCAGGACACTTCTCTCTGCCGATCGAATCAACGCACTGCTAAGCCCCAG
CACATCCGAGGAACAGAGTAGTGGAGAGCATAATTTCTTAGCTAGGCCTT
GATACGTGGTCCAGAGAACTAGAACTTGTTTTTTTTGTGTCCTGCGGTTC
CGCCCAACATGAGATGAGCGTTGTTGTCTCTTCTTCTCTCAAAAACCAAC
GTGCACCTCGTCTTCTGGCCACGATGTTTTTTTCTCAAGCCTGGCCAGCG
ACTCCCACCGATCAACGGGTCAAACAGTGAGGGTTGCTACGAACCCTTCG
TCAACTCGCCACGGTCTGTATTGCTTGAGAAATTCGTGAGGCAGATAACC
ACGAGGTTGAGGGTGATTGCTGCAGAAAGTCATGCCGCGGGAATCCCGCT
ATAATAAAGCGAGAGGCAAAAAAACTCCTGTGCTTTATTCTAGCGGGAAT
CCCGCGGAAACCACCCCAAATCTCCGATCCGATTAATGCGGGATTCTACC
CTCCTGTTTCTTTATTGTGAACAGTCTGGATTTTCCCAGATAATAAGGCA
AATAAAGCAGGAATCTGAAGCGGGATTCGAGTTTGAAATGTGCCAACGTA
AGTGGAGACTAGGGGAGCGACAGCCCCCTACCACTAAGAGACGATTTTCA
AAACCCTCCCTCCAGGCGCAGCTCCGAATAGCCCAAATTCCATCGCGGAT
CCCCCNNNNNNNNNNGGGGGCGCGCGGGGGGACCCCCCCCCCCCCCCTTT
TTTTTTTCACGTCGGCTTGGTCGATTTATCTCATCCAACAACACCTCGCT
ACGCCACAAGCGGCCCCATGGGCTTGTAATTGTTGGTCGCGAGCAAGGAC
AAAGCATTCTTTACCTCTAGGGCTGAGAGGCGGGGTCGAAAGTACATCTG
TCGGCTCTCGCACGGCGCAAGACATCGTCAGCAAGCTTCAAAAAGTCGTT
TCCCAAGCCTTTCGCCGCTTGTTTTGAAGACAAAACATACGATCTGTGAC
GGCAGCAATATCTCGTCTTCTAGACCACGAATGACTGCCATTTAGTATGT
GAAGGATGATGTTGGGTTGGACACACACCATTTACTCGGCCCCCAGACCA
CGAATCAAAGCCAGATCTTCACAGGTGCTACCTCTTACTATTTCCCTTTG
CCCGGAGCCACAAAGAGAGGGTTGGTCGGATGTATGTTTCCCCCAACGCG
AGGTATTTGATGTGTTTTGTCTCGTGTGGTTACTCGTCGACCAGAGCTTT
CGAATGGCCTTGGCATACAGCGGAGATAAAAACAAAAGACCGCGAGAGTG
CGTGCAAGGCACGGACACCTCGCCAAGGAAACATACATCCAATCAACCCT
CTCTTTGTGGCTCCGGGCAAAGGGAAGTAGTGAGAGGTAACACCTGTGAA
GATCTGGCTTTGGTTCGTGGTCTGGGGGCCGAGTAAATGGTGTGTGTTCA
ACCCAACATCATCCTTCACATACTAAACCACAGTCATTTGCTGGTTATGC
GATGATTTGAGGGGGCGGGAAGTACCCAATTTCTCGTCCTCTAGACCACG
AATCAAAGCGAAAGCTTCACAGGCCTCACCTCTTGCAGCAAAGCATTCAT
GCACATGTATGGTAGCACCTTCTGCTGTTGGGTGTGCCCTGTGCACTTAT
GGTTACTCGGCAAGCCTTTGGTCTCAGATTCTAGCCGCCCTCCACTTGCG
CTCCTCGCTTGCTACATATATTTTCCCTTCAAACATTTCAGGCGCAGCAG
CAACAGCAGCAGCTAAGCAGCGGCACCATCGACCAAAACAGCGCTTCTAC
CGCCCAGTCCGACCTTAGCCAGAAACCGTTCATAGATAGGCTCAGTCAAC
TCCGCGGCTATCCCCGGAGTGGGGCCGGCGCCGAGCAAAGCAGTCGCGGC
AGCAGCAGGCGTGGCGGTAACAGCGCAAGAAGCGAAAGGAGCGACCGCTC
CGGTGGCATCCCCGCAGCAGCGAGCCGCTGTGGAGTCTACGAAGGCAGGG
GACAGCATCATCATGCCCCCCCCCCTCGCTCGCGAGCCCAGGTGCGAGCG
GAGCTTGGCCAGCAGGACTCCCGCCTCGGTGCAAGACAAGAAACCAGTGT
CGCTGAACAAGGGTAGGTCCAAATCTGAACCCAAGCGAGGCGCGAGGAGC
GCTCGCCCGAAGCCAAGCCGAGGCGAAAGACGGCGTACGAAATCTTCCAC
AAGACAGCTAGTAAGGATCTGTACGACATGCTCGGCGGCAACGAGGCGAT
TGCCTCCAACTTTGAAGTCAACCACAAGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6485:1359..7190+

>mRNA_L-elsbetiae_contig6485.15164.1 ID=mRNA_L-elsbetiae_contig6485.15164.1|Name=mRNA_L-elsbetiae_contig6485.15164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig6485:1359..7190+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTTCACGATCGTCGATGGCAGTGGCACGGAACCGGGTGTTGTTAC
TGGCACATGGGCTTCACGATCGTCGATGGCAGTGGCACGGAACCGGGTGT
TGTTACTGGCACCCCGTCAGACGCGGTTGACATTCAGACGAAGGTTCTGG
TATTCCATCAGAAGCACGGGCAAAACCGTCGGGCGGCGCGGCTGGGGCAG
GGCCAGTTTCGCCAGAGAAGCAGGCCCGTCAGACGCGGTTGACATTCAGA
CGAAGGTTCTGGTATTCCATCAGAAGCACGGGCAAAACCGTCGGGCGGCG
CGGCTGGGGCAGGGCCAGTTTCGCCAGAGAAGCAGGGCGCAGCAGCAACA
GCAGCAGCTAAGCAGCGGCACCATCGACCAAAACAGCGCTTCTACCGCCC
AGTCCGACCTTAGCCAGAAACCGTTCATAGATAGGCTCAGTCAACTCCGC
GGCTATCCCCGGAGTGGGGCCGGCGCCGAGCAAAGCAGTCGCGGCAGCAG
CAGGCGTGGCGGTAACAGCGCAAGAAGCGAAAGGAGCGACCGCTCCGGTG
GCATCCCCGCAGCAGCGAGCCGCTGTGGAGTCTACGAAGGCAGGGGACAG
CATCATCATGCCCCCCCCCCTCGCTCGCGAGCCCAGGTGCGAGCGGAGCT
TGGCCAGCAGGACTCCCGCCTCGGTGCAAGACAAGAAACCAGTGTCGCTG
AACAAGGGTAGGCGCAGCAGCAACAGCAGCAGCTAAGCAGCGGCACCATC
GACCAAAACAGCGCTTCTACCGCCCAGTCCGACCTTAGCCAGAAACCGTT
CATAGATAGGCTCAGTCAACTCCGCGGCTATCCCCGGAGTGGGGCCGGCG
CCGAGCAAAGCAGTCGCGGCAGCAGCAGGCGTGGCGGTAACAGCGCAAGA
AGCGAAAGGAGCGACCGCTCCGGTGGCATCCCCGCAGCAGCGAGCCGCTG
TGGAGTCTACGAAGGCAGGGGACAGCATCATCATGCCCCCCCCCCTCGCT
CGCGAGCCCAGGTGCGAGCGGAGCTTGGCCAGCAGGACTCCCGCCTCGGT
GCAAGACAAGAAACCAGTGTCGCTGAACAAGGGTAG
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