mRNA_L-elsbetiae_contig6484.15163.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6484.15163.1
Unique NamemRNA_L-elsbetiae_contig6484.15163.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: D8LQV8_ECTSI (Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQV8_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.400e-54
Identity = 101/134 (75.37%), Postives = 111/134 (82.84%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQGWGWSPGVRPVSLSG 531
            ++ IALHYGFD A+RF D AHDMDNHF +EPP+Q+IP LMGLLGVWNSTF  HGARALLPYSQALLRFAAHIQQVDMESNG+RVAQDG+VLPF+AGEIGF +P  GTNGQ  FYQLIHQG     GV P    G
Sbjct:  283 VLPIALHYGFDIARRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGARALLPYSQALLRFAAHIQQVDMESNGKRVAQDGSVLPFDAGEIGFGEP--GTNGQHSFYQLIHQG-----GVFPADFGG 409
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: A0A836C9A9_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A9_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.160e-41
Identity = 87/140 (62.14%), Postives = 101/140 (72.14%), Query Frame = 1 
Query:  133 MTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG-------WGWSPGVRPVSLSG 531
            + +AL YG+D  K F   AHDMD HF + P +Q++P L+G+LGVWNSTF     RALLPYSQALLRFAAHIQQVDMESNG+RVA DGT LPFEAGE+ F +P  GTNGQ  FYQLIHQG        G+     PVSL+G
Sbjct:  286 LPLALQYGYDAVKAFLAGAHDMDRHFLEAPLRQNLPVLLGVLGVWNSTFLGSACRALLPYSQALLRFAAHIQQVDMESNGKRVAIDGTELPFEAGEVDFGEP--GTNGQHSFYQLIHQGRIVPCDFLGYCESPAPVSLAG 423
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: A0A484E1E8_BRELC (Glucose-6-phosphate isomerase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1E8_BRELC)

HSP 1 Score: 162 bits (411), Expect = 2.900e-40
Identity = 81/141 (57.45%), Postives = 100/141 (70.92%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG-------WGWSPGVRPVSLSG 531
            ++ +AL YGFD  + F + AH MDNH    P ++++P +MGLLGVWNS+F  H +RALLPYSQAL+RFAAHIQQVDMESNG+RV  +G  LPFEAGEI F +P  GTNGQ  FYQLIHQG        G+     P+ L+G
Sbjct:  284 ILPLALQYGFDIVEHFLEGAHAMDNHLLQTPLRENLPVIMGLLGVWNSSFLGHSSRALLPYSQALMRFAAHIQQVDMESNGKRVTMEGNTLPFEAGEINFGEP--GTNGQHSFYQLIHQGRVVPCDFLGFCESQNPIQLAG 422
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: H3G8D0_PHYRM (Glucose-6-phosphate isomerase n=45 Tax=Peronosporaceae TaxID=4777 RepID=H3G8D0_PHYRM)

HSP 1 Score: 161 bits (407), Expect = 1.050e-39
Identity = 85/159 (53.46%), Postives = 107/159 (67.30%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG-------WGWSPGVRPVSLSGAAGGGAGGEPRQAHVQLL 585
            ++ +AL YGFD  ++F   AH MD H  + P + ++P +MGLLGVWNS+F  HG+RALLPYSQALLRFAAHIQQVDMESNG+RV+ +G  LPF+AGE+ F +P  GTNGQ  FYQLIHQG        G+     PV L+G        EP   H +L+
Sbjct:  284 ILPLALQYGFDITEKFLAGAHAMDKHLLEAPLRSNLPVIMGLLGVWNSSFLGHGSRALLPYSQALLRFAAHIQQVDMESNGKRVSMEGVDLPFQAGEVNFGEP--GTNGQHSFYQLIHQGRVVPCDFLGFCESQNPVQLAG--------EPVSNHDELM 432
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: A0A8K1FFQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFQ4_PYTOL)

HSP 1 Score: 159 bits (402), Expect = 5.430e-39
Identity = 85/159 (53.46%), Postives = 106/159 (66.67%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG-------WGWSPGVRPVSLSGAAGGGAGGEPRQAHVQLL 585
            ++ +AL YGFD  ++F   AHD+D H  + P ++++P +MGLLGVWNS+F  H +RALLPYSQALLRFAAHIQQVDMESNG+RV  +G  LPF AGE+ F +P  GTNGQ  FYQLIHQG        G+     PVSL G        EP   H +L+
Sbjct:  288 ILPLALQYGFDICEKFLAGAHDIDVHLLEAPLRENLPVIMGLLGVWNSSFLGHSSRALLPYSQALLRFAAHIQQVDMESNGKRVTLEGVELPFAAGEVNFGEP--GTNGQHSFYQLIHQGRVVPCDFLGFCESQNPVSLDG--------EPVSNHDELM 436
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: A0A7S2EQ78_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQ78_TRICV)

HSP 1 Score: 147 bits (371), Expect = 8.790e-39
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG 489
            ++ + L Y     +RF D AHD+D HFFD P +++IP ++GLLGVWNSTF  + ARALLPYSQAL R  AHIQQVDMESNG+RV  DG V P   GEI F +P  GTNGQ  FYQL+HQG
Sbjct:    9 LVPLGLMYSHAVMERFLDGAHDIDEHFFDAPLRENIPVILGLLGVWNSTFLGYSARALLPYSQALRRLPAHIQQVDMESNGKRVHIDGAVCPLPTGEINFGEP--GTNGQHSFYQLLHQG 126
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: A0A067CVQ8_SAPPC (Glucose-6-phosphate isomerase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVQ8_SAPPC)

HSP 1 Score: 158 bits (400), Expect = 9.470e-39
Identity = 76/120 (63.33%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG 489
            ++ +ALHYG D    F   AHD+D H  + P ++++P L+GLLG+WNS+F  H  RA+LPY+QALLRFAAHIQQVDMESNG+RVA DG+VLPF AGEI F +P  GTNGQ  FYQLIHQG
Sbjct:  284 IVPLALHYGADITDAFLAGAHDLDEHLLNAPLRENLPVLLGLLGIWNSSFLGHATRAMLPYAQALLRFAAHIQQVDMESNGKRVALDGSVLPFAAGEINFGEP--GTNGQHSFYQLIHQG 401
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: UPI0007120E26 (glucose-6-phosphate isomerase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007120E26)

HSP 1 Score: 158 bits (400), Expect = 1.060e-38
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG 489
            ++ ++LHYG++  + F + AHDMD H  + P +++IP L+GL+GVWNSTF  +  RALLPYSQALLRF AHIQQVDMESNG+RV+ DGT LPF+AGE+ F +P  GTNGQ  FYQLIHQG
Sbjct:  294 LLPLSLHYGYEVMETFLEGAHDMDVHAREAPLEKNIPVLLGLIGVWNSTFLEYPCRALLPYSQALLRFPAHIQQVDMESNGKRVSMDGTALPFDAGEVDFGEP--GTNGQHSFYQLIHQG 411
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: A0A7S2V3M3_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3M3_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.130e-38
Identity = 77/120 (64.17%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG 489
            M+ ++LHYGF+  ++F     DMD HF + P +Q+IP LMGLLGVWNS+F  + +RALLPY QALLRF AHIQQVDMESNG+RV  DGTVLPFE GE+ F +P  GTNGQ  FYQL+HQG
Sbjct:  323 MVPLSLHYGFEVMEQFLAGCRDMDQHFLNAPIRQNIPVLMGLLGVWNSSFLGYSSRALLPYCQALLRFPAHIQQVDMESNGKRVTTDGTVLPFETGELDFGEP--GTNGQHSFYQLMHQG 440
[Close]
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Match: A0A6U2AQ63_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2AQ63_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.960e-38
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 1 
Query:  130 MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTFGRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGFEDPSTGTNGQLFFYQLIHQG 489
            ++ +++ YG+D    F D AHDMD HFFD P +++IP ++GLLGVWNSTF  + +RALLPYSQAL R  AHIQQVDMESNG+RV  DG  LP+ +GEI F +P  GTNGQ  FYQL+HQG
Sbjct:  104 LLPLSIQYGYDVLCSFLDGAHDMDEHFFDAPLRENIPVILGLLGVWNSTFLGYPSRALLPYSQALRRLPAHIQQVDMESNGKRVGTDGFALPYPSGEINFGEP--GTNGQHSFYQLLHQG 221
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6484.15163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQV8_ECTSI2.400e-5475.37Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus T... [more]
A0A836C9A9_9STRA1.160e-4162.14Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A484E1E8_BRELC2.900e-4057.45Glucose-6-phosphate isomerase n=1 Tax=Bremia lactu... [more]
H3G8D0_PHYRM1.050e-3953.46Glucose-6-phosphate isomerase n=45 Tax=Peronospora... [more]
A0A8K1FFQ4_PYTOL5.430e-3953.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2EQ78_TRICV8.790e-3960.83Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A067CVQ8_SAPPC9.470e-3963.33Glucose-6-phosphate isomerase n=3 Tax=Saprolegniac... [more]
UPI0007120E261.060e-3862.50glucose-6-phosphate isomerase n=1 Tax=Blastocystis... [more]
A0A7S2V3M3_9STRA1.130e-3864.17Glucose-6-phosphate isomerase n=1 Tax=Fibrocapsa j... [more]
A0A6U2AQ63_9STRA2.960e-3860.83Glucose-6-phosphate isomerase n=1 Tax=Pseudictyota... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6484contigL-elsbetiae_contig6484:239..6423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.0
Seed ortholog evalue1.5e-49
Seed eggNOG ortholog2880.D8LQV8
Preferred namePGI
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0003674,GO:0003824,GO:0004347,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009987,GO:0010035,GO:0010038,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042866,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046686,GO:0046700,GO:0046939,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0098542,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.glucose-6-phosphate isomerase activity
EggNOG OGsCOG0166@1,KOG2446@2759
EC5.3.1.9
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons7
Model size1528
Cds size675
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.422876-UTR-L-elsbetiae_contig6484:238..9221622816715.422876-UTR-L-elsbetiae_contig6484:238..922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 239..922 -
1691683760.6454735-UTR-L-elsbetiae_contig6484:238..9221691683760.6454735-UTR-L-elsbetiae_contig6484:238..922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 239..922 -
1622816715.434731-UTR-L-elsbetiae_contig6484:1668..17081622816715.434731-UTR-L-elsbetiae_contig6484:1668..1708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 1669..1708 -
1691683760.6641486-UTR-L-elsbetiae_contig6484:1668..17081691683760.6641486-UTR-L-elsbetiae_contig6484:1668..1708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 1669..1708 -
1622816715.4971097-UTR-L-elsbetiae_contig6484:3800..38051622816715.4971097-UTR-L-elsbetiae_contig6484:3800..3805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 3801..3805 -
1691683760.7167218-UTR-L-elsbetiae_contig6484:3800..38051691683760.7167218-UTR-L-elsbetiae_contig6484:3800..3805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 3801..3805 -
1622816715.5106142-UTR-L-elsbetiae_contig6484:4400..44891622816715.5106142-UTR-L-elsbetiae_contig6484:4400..4489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 4401..4489 -
1691683760.728163-UTR-L-elsbetiae_contig6484:4400..44891691683760.728163-UTR-L-elsbetiae_contig6484:4400..4489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 4401..4489 -
1622816715.5245433-UTR-L-elsbetiae_contig6484:6388..64231622816715.5245433-UTR-L-elsbetiae_contig6484:6388..6423Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 6389..6423 -
1691683760.739732-UTR-L-elsbetiae_contig6484:6388..64231691683760.739732-UTR-L-elsbetiae_contig6484:6388..6423Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6484 6389..6423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816715.4452991-CDS-L-elsbetiae_contig6484:1708..18421622816715.4452991-CDS-L-elsbetiae_contig6484:1708..1842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 1709..1842 -
1691683760.6759868-CDS-L-elsbetiae_contig6484:1708..18421691683760.6759868-CDS-L-elsbetiae_contig6484:1708..1842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 1709..1842 -
1622816715.4581-CDS-L-elsbetiae_contig6484:2515..26991622816715.4581-CDS-L-elsbetiae_contig6484:2515..2699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 2516..2699 -
1691683760.6842027-CDS-L-elsbetiae_contig6484:2515..26991691683760.6842027-CDS-L-elsbetiae_contig6484:2515..2699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 2516..2699 -
1622816715.4697022-CDS-L-elsbetiae_contig6484:2995..31301622816715.4697022-CDS-L-elsbetiae_contig6484:2995..3130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 2996..3130 -
1691683760.692119-CDS-L-elsbetiae_contig6484:2995..31301691683760.692119-CDS-L-elsbetiae_contig6484:2995..3130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 2996..3130 -
1622816715.4834163-CDS-L-elsbetiae_contig6484:3578..38001622816715.4834163-CDS-L-elsbetiae_contig6484:3578..3800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 3579..3800 -
1691683760.705573-CDS-L-elsbetiae_contig6484:3578..38001691683760.705573-CDS-L-elsbetiae_contig6484:3578..3800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6484 3579..3800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6484.15163.1prot_L-elsbetiae_contig6484.15163.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6484 1709..3800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6484.15163.1

>prot_L-elsbetiae_contig6484.15163.1 ID=prot_L-elsbetiae_contig6484.15163.1|Name=mRNA_L-elsbetiae_contig6484.15163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MMTIALHYGFDNAKRFFDRAHDMDNHFFDEPPQQDIPGLMGLLGVWNSTF
GRHGARALLPYSQALLRFAAHIQQVDMESNGERVAQDGTVLPFEAGEIGF
EDPSTGTNGQLFFYQLIHQGWGWSPGVRPVSLSGAAGGGAGGEPRQAHVQ
LLRAARRPGIRQDRRGAGGQGGAGVAALEQGLHLEPAVVVAALAEAVHLL
LRAAAGRLRAPHGGAGFRVEVHLF*
back to top

mRNA from alignment at L-elsbetiae_contig6484:239..6423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6484.15163.1 ID=mRNA_L-elsbetiae_contig6484.15163.1|Name=mRNA_L-elsbetiae_contig6484.15163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6185bp|location=Sequence derived from alignment at L-elsbetiae_contig6484:239..6423- (Laminarionema elsbetiae ELsaHSoW15)
CAGGGACGACTTCATCGGCGGCCGACGATGATGAGGTGTGTGGTCCATGG
CACAACAGTATTAGTTCGGTTGGGGGCAGCGAAGCTTTGTCTAGGCGTCG
TGCCGACATGATGTTCCCGATGTTTGGATTTGCATGCAATGGACTGGAGC
GATGTGCAGTTGGCCCTGCCCCGCTGCTTGAATGTCTGCCTTGAAGTTGA
TGTGGCAGGCGCACATGCTGTTCATATCACTATTTTCCGAGTCCCACACG
AAGTACACAGGTGTTGTCGACACACACACTAATGTAACCCTCCCTCGCCA
CCCTTGACTACAGCGGTATGTAAATGTACAAAAGATGAGCAAGCTGTGTA
CTTTCTGGTAAACTGTTTGTCGCTGGCTTGGGTACATATGGGTTAGTTTG
TGTTTACTGTTCATTGTTGTTTTGAGCACGCGCGCCCGCTGACCCGTGGG
CTGTGTTTAATGTTTCGATCATCTTGATCGTCCCAGGCATCAGATTTCAC
AACCGATTTATTTTGGGCTTTTATTTCGCGGGAAGCTGTTGAGCGTTTAG
TATTTGACTAGTATGTAGTTGGGGATCACTCCTGCTTGATAAATGTTTTT
TGTGTTTCCTGCTCTCTGTCTGCAGACCCCCCTTCATGCGAACTGTCTGC
GGCTGGGCTCTTTGTCCTAGGGTGAGGAACTCGAACATGGTTCTCCGTGC
GTGATAAACAAACCAAAGCTCTTCACTCGAGAGAAGACGATGCGTGCGCA
ATGACCAAATGCGGCGGTAAATACTACCATAGTAGTGTTGTATGAGTCGT
GCGAGCTCATACCTAGAGTAGTCTACATCGGCGATTGTTGTGACGTGAAG
AAGCATGTCGGTCGCACACCAACGCTTTGCCTCCAACTCCTCCTGCACTC
GGGTGAAAAAGCGAATGTTCCGAAGGACTAAAAAACGTAGATCCGAACGT
ACAGACACACACACCTCCTCCTGTTGCGTCGCACATGCGTCGACAGCCCT
ACTCACGCTGTTTTTCTGGAGCTTATTCGTTACCCCTTGTCGATGTTTTG
AATGCCGATATCGAGCAAAAAGAGTGCTTGATCAACCGCGTGACAACATG
AAAAAAAAAAAACACCCCCGTCGATTTGACATGCGACCGAGTAGAAACAA
ACGCTCTGATCACGATTTGGATTGAATTGGTTGAGGAGAGGTACACCGAC
GAGCTTTGAACATAACGCGCGGGTAGAGCTGTCGACGCATCTACTCAGTT
TTGTCTGGAAGGCCGAGAGGCAGAGGAGATGTGTGTGCGTGTGTGTGAAA
AACAAACAAGAAAGCTGTTGCTGTTCGTTTTTCCCTCCCTCCGCTCGGAC
ACGCATGCGCCTGCGCTTTTGGGGCAACTGTTTCCTCTTTTGGCGTCAAC
ATCATATCGTTGCGTGAAAACATGCTCCTGCTGGCGTCTCTATCCTGTAG
TGTGCCTCCTCTCGCTTCGAGTGTGTGTGTGTACGCCTCCTTCACTGCTG
TGCTGTGTGTTCTCGTGTTCTGAAAGAGGGAGGGGACGCTGGGAGACCGT
CCCCTAAAGCAGGGAGTTTGTGGGCTGGATTTGGATGTTTGCCTTCTTCG
ATGCCCGCTGGCACGCTCCTCTCTTGAGCATGGCCACAAAAGACAAACCC
ACACGATCGGCTGTATTTTAGTGCATCCACCGAACCTGTCACATCTCTTC
TCAGTTCTTGTGTCGATCGCATTTCCCAAAATAGAGGGTAATTATGGCTT
CGGACAAACCTAAATTATGGGCCGCTTGGACAATTTTTCGCACCCTGAAT
AAGCCCCCCCCCCCGATATCTAGAACCTTCTTTATTCGCTAGAAAAGTAA
CGAAAAATAAGGCTCGCTTCGCTCGCGCGCCTCATAGTAAAAAGCTGATG
GGGTGGCACCCCCTCCCCGTGTTTCTGTTGCTAGGTGGCGGTGAGCACGA
GCGACAAGATTTGCCAAGAGCTCGGAGTAGCGGCCACCAACATCTTCGGC
TTCTGGGTCTGGGCGGGAGCAAGGTGGGGATCAAGTCAGGGTGTGACGTT
GTTGTTCGGTGCCGAAATATGAAGGGTTGTTGTTGTTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTTGTGGTGAAATTAAGGGGCGTTTCGGGACAAGC
CGCAACTTCAAACATCCCCACAACCTCGTTGCTAGACTCCAGACCCCTGC
AAATAGGAGGTTTTGTCTATATTTATGCGTTTCTACGGCCACTGAGGGTT
GGCTAGTGTTCTGGTATTGGAAATAGCCGAGTATCAGGATATATGAAGGC
GTCTCGTACCATGGGGCGCGTGCGCATCTAGCCTGTGCCATGAGATCCTG
CAGCAGCCCCACCCAGTATGACATAACCGTCCCGATGTCTCGGCTCCAGT
ACGTTCATCTGTCCGCTCTCATCCTACAATACCCATGATGCGATCGCAGG
TCAATTATTTACAAAGGGTGTTCTCATGATGAGTTGAGGTTTAGTGCTGA
CATACGTAGATACGCTACTAGATTGAGTTTTACCTTCGAGGCTTGGAACA
AAAATCTGCCCCTCCCCCCCCTCCCCTCATTTGTTTATCTCGCGTACCCC
TTCTCCCCCCGAAAACAGGTTGTATGATGACCATCGCCCTCCACTACGGG
TTTGATAATGCGAAGCGCTTCTTCGACAGGGCCCACGACATGGACAACCA
CTTCTTCGACGAGCCCCCCCAGCAGGACATCCCGGGGCTCATGGGCCTCC
TGGGCGTGTGGAACTCTACGTTCGGGAGGCACGGAGCGCGCGCGCTGCTG
CCCTACTCGCAGGCGCTGCTTCGGTTTGCGGCGCACATCCAGCAGGTTGG
TGTGTCTGTGTCTGTGTGTGTTGGTGTGTGTGTGATCCGGTATTTTTGGC
AGTTGCAGTTGCAGCGGTGGTGGTTTGTGGTTTTGTGGTGGTGGTGTGGT
GCTGTCGGTGTTGGTGGCGGGCGGTGTTTGCTGCTGGCGGTGGGTGGGGG
TGTTGTCGCGCTCGCCCTTTCTGTGCCTATCTTTGACAAACCCTCCCTCA
CAGCGAATAAATGCTTGTGTAATTTGGCTTCATCCTCAAGAAAGCATGCA
TTCTCGCGTGCTGGGGTTTTGTCTTTTTCCTCCCTCCCGCCTACAGTGTG
CAAAGTTTGGGTATTGTTTCTCGCTCTCCGAAACAAAAAGGTTAAAGTGC
AGAGTTTGATCATTCCCCATCTCCCCCCTGCCTGCTGCCTGCGGTACGCA
CTTTTTGGGTATTGTTTTTCTCGGCTCTCTCCGAAAAAAAAAGGTCGACA
TGGAGAGCAACGGCGAGCGCGTGGCCCAGGACGGCACCGTGCTTCCCTTC
GAAGCCGGAGAAATCGGCTTCGAGGATCCCAGCACCGGCACCAACGGCCA
GCTCTTCTTCTACCAGCTCATCCACCAGGTATTTTATCTACAGGTACTGC
TGTCCTCGTGGCAGGGGCAACCCAAGTCAAGGTTCTGCCGTATCCACAGT
GCATCGGTCTGGTGCGGCGATGATGAGTGGACCAGCTGCGTACAAGGAGG
CACGTGGATTCACACATGTCTGTTTTGGTATATATCCCGGCTTTCCTTGG
ACGGACGTACTCCCCGGCTATGCCGTGCCCCCCAACAAACACCTCCCCCT
CCCTCTCCAACAACGTATACACCGCACAAATTGCCCGTACTCTCTCTCTA
TCTCACACACGCGCACAATACCAGGGATGGGGGTGGTCCCCTGGGGTAAG
GCCAGTCTCATTGTCCGGTGCTGCTGGAGGGGGAGCCGGTGGCGAACCAC
GACAAGCTCATGTTCAACTTCTTCGCGCAGCCCGACGCCCTGGCATACGG
CAGGACCGCCGAGGAGCTGGAGGCCAAGGGGGTGCCGGAGTGGCTGCGCT
AGAACAAGGTGAAAACTGGTGGCTTCGTTAGTGGCGGTGGTGGGTGTTGG
TGCGTTTATTTGTTTATTTGTTTGCTTTTTTCAGTTCAATGGTGGTGTTT
TTTTTTGTTTTTCGTCAGTGGTGACGGTGGAGGTAGTCGTGGTGCGTTGT
GCTCGTCGTAGTTGCTTGACTGGGGCTTTTGTGCATAGCTTCTCGGCGTA
GTGTACTTGGTACCACGCGTGGGCTCATGTTTTATTGTAAGAGTATGAGA
AGCTCGGAGGTACCTACCTACCGATTTCAATACTCCCGCCTGCTTTCTTC
CGATTCCGGGTGGGGGGACTGGCCGATGGGCAATTTATTCCTGAGCCGCT
AAAATGAAGTGCTTCACCAGCAACCCCCGCCGCCCGAAGATGAAGAGTCG
AAATCTTGGTCAAAGTTAAGGAGGGGCCCAATGGCCACGCGGCTGGCTGT
CGCCGGTTTAGGTTGTGGGTGGGGTTCCTTGCTTTGGCATTCTAGAAAGA
GCAGTGCGCACGTGTTTAGAACGCGTCTCCAAACCCGTAACCCCCCTTTG
ACCCATTTAGTCATATCCTGTAGAGTATGTCTTGCGCAATCTCCCCCCTT
CTGTGTTGTTCACCTCCACAACCCCCGGCCCTCTTCGACCCCTGTTTTTC
GTAACTATACTTTTTCGTGAAAATATAAAAGGTCTTCACCTGGAACCGGC
CGTCGTTGTGGCGGCTCTTGCCGAGGCTGTACACCTTCTCCTGCGGGCAG
CTGCTGGCCGTCTTCGAGCACCGCACGGCGGTGCAGGGTTTCGTGTTGAG
GTTCATCTCTTTTAACCAGTTGGGGGTGGAGCTCGGCAAGAAGCCGGCTA
ACGAGGTGGGTGATTGGATGGATTATTATAATTGTCTGTTCCGTTCGAGC
GGTGTATGTTGTAGAGCACTGATTTGTTTTTCCGTGGTTTTAATTTCAAG
CGTTGGTGGTAGGAACGAGATACCTACCGTAGGTGACACAAGATACCCAA
ACCCACTTGACCGATTTTTAGAGGTCCATTACTCCGTCACAAAGAAAGAG
TCGGCACCAAACGACACATTTGCGGACAGCCCTTGACTAGATGTTTTCAA
CGCCACTCTTTTTGGCACTGGCACTCTTCTTGCGAGGGAGGAATCGATCT
TTGAAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAGTGG
TTTAAAATAGTGATTTTTGTGTTGCTGCTTTCACATGTACGTTTAAACGA
TATTACACCGCGCGTGTTTCATGTGCCGCCTGGAAATTGAAAAGAGGGCC
ACACTCGTATTCTCCGCACTCTCTTGATAAGAAGCAAAAGAGCAAAACGT
ATTTATCCAAAAAAACAACAACAAACGATGCCGTGTTTCCGCTTGTTCTC
GCCAGAAAAAATGAATAAAACACACAACAACCCCTCGGAACAAACGACGA
CGTCGTGCCCTTCTTTTCTTCTCGCGTAATTCATGTTGTTATTCATCAGT
GCTCGGACGAGGGTCGTCGCAAAATTGGGGAACAAACACGGAATAGCAGT
GTCATGTTTGCGTCCATTTCTCGCGGTGTTTTTTCAATGTTGTTTTTTCA
GGTGCGCGCTTCTCTGTCTACCGCGCGCATCGCGGGCGGAGATGCCAAGG
GCTAAACCCGTCCACCTCCAGCCTCATGGCCTGCTACCTTGCCAACGGGC
TTGCGTTCCAAGGTCGGCTGGGGTATTCATCTAGTGGCAGGCGGCAGAGG
GAGGAGAGGAGAAATGCACATGAGGTGTTGCAGTTGCGCGCAGCATGGGA
TGGTGGGGATATCGAGGAAGTTCGTTTCGCCCACCAGCGGATAAGAGTAT
GGGGGCGGCGGCGTTTGCGACGGCGGCCTTCGTGCTACTGTTGCAACCTT
TTGGTGTCTTGAAGCGAAGACTTGGTCGAGTTGACTTACGGAAGCGGGAT
CTTGCTCTCGCGGTGCCAAGTGCCAAGTGCCAAATGCCGACAGAACTCAT
GTTGTGCGCGTGTTTTTGTTTTGATACTCGTGGTCGCCGGGGCGGGACGG
GTTGTCGATGCTGGACCGTGTGCTTTCTTGTGATCATCTGCGGGCTAAGG
ATAGAGGGTGCCGTGAAGCCGCGACGTACATCGATGTTTAAAGGATTTTG
ATTAGATGCTTTGAGATAGCGAAAAGAGGCACGTAGTTGTAGACGCGTGT
TTTCAATTTTGTCGCGAGAGATGACGACAAACCTGTCCTCAACCGAGTGG
CGGGAGGGAACGAATTCTCCATTTTTGAGGCGCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6484:239..6423-

>mRNA_L-elsbetiae_contig6484.15163.1 ID=mRNA_L-elsbetiae_contig6484.15163.1|Name=mRNA_L-elsbetiae_contig6484.15163.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig6484:239..6423- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGACCATCGCCCTCCACTACGGGTTTGATAATGCGAAGCGCTTCTT
CGACAGGGCCCACGACATGGACAACCACTTCTTCGACGAGCCCCCCCAGC
AGGACATCCCGGGGCTCATGGGCCTCCTGGGCGTGTGGAACTCTACGTTC
GGGAGGCACGGAGCGCGCGCGCTGCTGCCCTACTCGCAGGCGCTGCTTCG
GTTTGCGGCGCACATCCAGCAGATGATGACCATCGCCCTCCACTACGGGT
TTGATAATGCGAAGCGCTTCTTCGACAGGGCCCACGACATGGACAACCAC
TTCTTCGACGAGCCCCCCCAGCAGGACATCCCGGGGCTCATGGGCCTCCT
GGGCGTGTGGAACTCTACGTTCGGGAGGCACGGAGCGCGCGCGCTGCTGC
CCTACTCGCAGGCGCTGCTTCGGTTTGCGGCGCACATCCAGCAGGTCGAC
ATGGAGAGCAACGGCGAGCGCGTGGCCCAGGACGGCACCGTGCTTCCCTT
CGAAGCCGGAGAAATCGGCTTCGAGGATCCCAGCACCGGCACCAACGGCC
AGCTCTTCTTCTACCAGCTCATCCACCAGGTCGACATGGAGAGCAACGGC
GAGCGCGTGGCCCAGGACGGCACCGTGCTTCCCTTCGAAGCCGGAGAAAT
CGGCTTCGAGGATCCCAGCACCGGCACCAACGGCCAGCTCTTCTTCTACC
AGCTCATCCACCAGGGATGGGGGTGGTCCCCTGGGGTAAGGCCAGTCTCA
TTGTCCGGTGCTGCTGGAGGGGGAGCCGGTGGCGAACCACGACAAGCTCA
TGTTCAACTTCTTCGCGCAGCCCGACGCCCTGGCATACGGCAGGACCGCC
GAGGAGCTGGAGGCCAAGGGGGTGCCGGAGTGGCTGCGCTAGAACAAGGG
ATGGGGGTGGTCCCCTGGGGTAAGGCCAGTCTCATTGTCCGGTGCTGCTG
GAGGGGGAGCCGGTGGCGAACCACGACAAGCTCATGTTCAACTTCTTCGC
GCAGCCCGACGCCCTGGCATACGGCAGGACCGCCGAGGAGCTGGAGGCCA
AGGGGGTGCCGGAGTGGCTGCGCTAGAACAAGGTCTTCACCTGGAACCGG
CCGTCGTTGTGGCGGCTCTTGCCGAGGCTGTACACCTTCTCCTGCGGGCA
GCTGCTGGCCGTCTTCGAGCACCGCACGGCGGTGCAGGGTTTCGTGTTGA
GGTTCATCTCTTTTAAGTCTTCACCTGGAACCGGCCGTCGTTGTGGCGGC
TCTTGCCGAGGCTGTACACCTTCTCCTGCGGGCAGCTGCTGGCCGTCTTC
GAGCACCGCACGGCGGTGCAGGGTTTCGTGTTGAGGTTCATCTCTTTTAA
back to top