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Homology
BLAST of mRNA_L-elsbetiae_contig6474.15153.1 vs. uniprot
Match: D7G0W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W8_ECTSI) HSP 1 Score: 299 bits (765), Expect = 1.270e-100 Identity = 151/194 (77.84%), Postives = 165/194 (85.05%), Query Frame = 1
Query: 1 DKGEPLVSPARNFSPITVGKRLLKPSPPRVKRVVRRPAAYEESILSRYLSQSLPAKLSAXXXXXXXXXXXALFFGEGDGPKLVKRDAPLVPGDRLKGGQYISFCTSILATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTAAKGGATGSSSYELVYSGERVVLNKDGKVKWSAAVRSLPKNMQPWPLSK 582
DKGEPL+SPAR FSPIT GKRLLKPS PR ++ RP EES+LSRY SQSLPAKLSA ALFFGEGDGPKLVKRDAPL PGDRLKGGQYISFCTSI+ATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGT AKGG + YELVY+G+RVVLNKDGKVKWS++V+SLPKNM+PWPL++
Sbjct: 42 DKGEPLISPAR-FSPITAGKRLLKPSSPR--KITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEAFYELVYTGDRVVLNKDGKVKWSSSVKSLPKNMRPWPLAQ 232
BLAST of mRNA_L-elsbetiae_contig6474.15153.1 vs. uniprot
Match: A0A836CBU0_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU0_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.090e-16 Identity = 57/172 (33.14%), Postives = 89/172 (51.74%), Query Frame = 1
Query: 121 EESILSRYLSQSLPAKLSAXXXXXXXXXXXALFF---GEGDGPKLVKRDAPLVPGDRLKGGQYISFCTSILA--TGCKPKYFELGRDGSLGVYGGKSPYAQKA--KLWTAGTAAKGG-----ATGSSSYELV-----YSGERVVLNKDGKVKWSAAVRSLPKNMQP-WPLSK 582
E ++ ++Y + L L AL++ G P+L++RDAPLV GD LK G+Y++ CT I A T C P YFEL +G LG++ GK P KLW +G+AAK A ++ L+ Y+ ++ + + +V W+AA LP+ ++ WPL +
Sbjct: 13 ERTLWAQYQGERLAVVLGNIVGVLLLLVAVALYYVPPGPAGAPRLIRRDAPLVDGDVLKAGEYMTTCTGITAMVTNCTPMYFELSPNGELGLFRGKGPLDDPPAQKLWASGSAAKPSKKKRFAKSTAEQPLLLPRALYAAGQLTVKRGDEVVWAAAAERLPEALRGGWPLKQ 184
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal anchor |
Ec32 ortholog description | Bulb-type lectin domain |
Ec32 ortholog | Ec-23_002020.1 |
Exons | 5 |
Model size | 585 |
Cds size | 585 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816714.748762-CDS-L-elsbetiae_contig6474:3728..3794 | 1622816714.748762-CDS-L-elsbetiae_contig6474:3728..3794 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 3729..3794 - |
1691683760.2184613-CDS-L-elsbetiae_contig6474:3728..3794 | 1691683760.2184613-CDS-L-elsbetiae_contig6474:3728..3794 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 3729..3794 - |
1622816714.7612946-CDS-L-elsbetiae_contig6474:4227..4392 | 1622816714.7612946-CDS-L-elsbetiae_contig6474:4227..4392 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 4228..4392 - |
1691683760.2285836-CDS-L-elsbetiae_contig6474:4227..4392 | 1691683760.2285836-CDS-L-elsbetiae_contig6474:4227..4392 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 4228..4392 - |
1622816714.7711635-CDS-L-elsbetiae_contig6474:5294..5424 | 1622816714.7711635-CDS-L-elsbetiae_contig6474:5294..5424 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 5295..5424 - |
1691683760.2415743-CDS-L-elsbetiae_contig6474:5294..5424 | 1691683760.2415743-CDS-L-elsbetiae_contig6474:5294..5424 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 5295..5424 - |
1622816714.7818508-CDS-L-elsbetiae_contig6474:8221..8325 | 1622816714.7818508-CDS-L-elsbetiae_contig6474:8221..8325 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 8222..8325 - |
1691683760.2507894-CDS-L-elsbetiae_contig6474:8221..8325 | 1691683760.2507894-CDS-L-elsbetiae_contig6474:8221..8325 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 8222..8325 - |
1622816714.7930956-CDS-L-elsbetiae_contig6474:9496..9616 | 1622816714.7930956-CDS-L-elsbetiae_contig6474:9496..9616 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 9497..9616 - |
1691683760.2637522-CDS-L-elsbetiae_contig6474:9496..9616 | 1691683760.2637522-CDS-L-elsbetiae_contig6474:9496..9616 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6474 9497..9616 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6474.15153.1 >prot_L-elsbetiae_contig6474.15153.1 ID=prot_L-elsbetiae_contig6474.15153.1|Name=mRNA_L-elsbetiae_contig6474.15153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
DKGEPLVSPARNFSPITVGKRLLKPSPPRVKRVVRRPAAYEESILSRYLS QSLPAKLSAVLSVVAIAVALALFFGEGDGPKLVKRDAPLVPGDRLKGGQY ISFCTSILATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTAAKGG ATGSSSYELVYSGERVVLNKDGKVKWSAAVRSLPKNMQPWPLSK* back to topmRNA from alignment at L-elsbetiae_contig6474:3729..9616- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6474.15153.1 ID=mRNA_L-elsbetiae_contig6474.15153.1|Name=mRNA_L-elsbetiae_contig6474.15153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5888bp|location=Sequence derived from alignment at L-elsbetiae_contig6474:3729..9616- (Laminarionema elsbetiae ELsaHSoW15) GACAAGGGCGAGCCCCTGGTGTCCCCCGCCCGAAACTTCAGCCCCATCAC
GGTGGGAAAGCGGTTGCTCAAGCCCTCGCCCCCTCGCGTCAAAAGGGTCG
TTCGGAGGCCGGCGGCATATGTGAGCTGTTTACATGTAATTATATACAAA
CAATACACAAACGCACTTTTCTGCACTGCTGCTGCTGCTGCTGCTGCTGT
TGTGCTGTTTTTGTCGTGGTCGTGGTGGTGTCTGTTCTTTGATGGTTTGT
TTTTAATTAATGCATACAAATGTCAGCAGCCTACGTCCAGTCTGTGAAAA
GGTCGTTCCAGAGGGAACTGTTGTAGGCATGCTAGTTTGTTTTTGAATTA
TTATTCCATCGAACTAATTCGCCTCTTTTTCGATCGAAAAAGGTCGGAGA
AGCTACCTATGAGTATGTACATATAAGTATATGAACATGGGTGATGTGGA
CAACGTTTCGGAAGCCTCGCGGGCGCCCCTTTTTTCGCCGGCAGAGTAAT
TTCGCCGAGACCCTCCACCGCAGGGATAAAATTCCGCACTTCCCAGCAGT
GTCACGCTTGCCTCTTTTCCGTGTCAGCAGCAAGCAGCCAAACTCTTTTA
TTAGGCCAGGAGAAATCACGAGTGAGGACGAGGACAACAAATAACAAAAA
AAGCACGTTTGTTTCTGATTCTGATCTCGATTTACCAAAAGAAAGAGGCA
AAATTCAGCCCGCCTGGCTTTTTTCTGTACCCCCTTCCCCGCTGGCCTGC
GGAGCGTGTGAGGCCGCTGCCGTTGTGTGGAGTACATATGTCTTGGACAA
GAAAGGGGGAGTTGGTGTGTAAATAAAATATGCCTACATTTAACAGTCCT
CTGGAACGACTTTTTCACGGACTGGACGTAGACTGCTGACATTTGCATAT
TGCACATTAATTAAATATGCATATTGCAGCGAGATCTGCGAACTACAGAT
AGTAGTAGTTGTTTTCTTCGGAACCGAGAGGACGCCGCCCCGGCCCGTCG
CCAAAAGTCCGTGCTTTCGTGTTTCGGTCCGGTTTCTTCTGCTCTTCTTC
AATACTAGTATTGTCAATACTACAATATTGTAATACAAGAATATCTTTAA
CCACACACTTCTGCTCTCCAAACTAGTATTGTCAATAAATACTACAATAA
TACAAGAAAATATTGTAACTAATTTACCACACATATTTGTTCTATATTTT
TTCGATATCTTCGTACATAGACTATTTAGACTATTAGATTATATCTGTAC
CTGATGGCTTCGCTTTTATTGTTGTTTTTTGCTGACTGCAGGAAGAGAGC
ATCCTGTCCAGGTACCTGTCGCAGAGCCTCCCGGCGAAGCTGTCGGCGGT
GCTGTCGGTCGTGGCCATCGCCGTGGCTTTGGCGCTCTTCTTCGGGTAAG
ACATGAGACAGACAGGTGCATGCATACTTCGAGTTAAAAACATTAAGGGC
AGGCACCGCGGGAGGGGGTCCGCCCCCCCCCCCCCCCCCCCCTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTGGGGGGGGGGGGGGGGGG
GGGGGGTGGGGTGATCAAATAATNNNNNNNNNNTCTTTCTGGGGAAAAAG
GGGAAAGACAGGGGCAGGCTACTTTCAGGTTAAAAAAATAAAGGGGGGGC
CCCGGGGGGGGGGGGCCCCCCCCCCCCCCCCCCCCCCTTCTGTGTGACCT
CGGCTGGGTCGTCTAGGCCAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGC
AGACGACGAATAAGCCAATACTGTGAAGAAAAAAAAAGAAAAAAAATACT
TGGAATGTACAAGTATATGTAAGCAAGCAGTACACAGGGGTGTTTTATTT
ATTTTTATTTTTTATTTTTTTATTTTCTCAACTTTTGGGTTTGGAGAACA
TATATGTTGTTTGTATTTATGTATTCATGCATATATTGTGGTTGTACAAT
AATGTAATATTTGGGATGTGCTTTTTATTTTATTTATTTTGTTTCGTTTT
TTGTGTTTTTTTTTTTGGAAGACAAACAATCAAGTCAGGCGCACTCAGTG
TCGTTTTCGAAGGAGCGATATGTGGTGTGGTGCCATGCACATACCTTACT
ACAAGCGGTAAATTGCGCATGGTTTCCTGGCGCCTGTTGATTGCTCCCCC
GGGTGCGTGCGGGTGGTGGTCGCGATCGTCCTGGTGCTGGTGCTGGTGCT
GGTGCTGGTGCTGGCTTATTCCTGGACCGCCTAACCGGCGGAAACTAAGT
TTATCTATAAAAATAACCCTATTACCCTAGCCCTAACCCCAACCACCGAC
CCCCTTTCTCGGTTTCCATACCTAATCCCATATGTCAGCTGAAGATGAAA
AGATGACAGCCCTGCGTAGACTACTACTGTTATTCCTTCCCTCTACGATA
CGTCTGGCACGCATTTTCGAGCCACACGCGAGGCAGCGAGTGAGTTGCAA
AGCGGCTCGCCCGGCTGTGCAGCAAAAGTTGGGAGCCCGGAGCCCGGAGG
AGACCAACTTTTCAGTTTCTCGCGTCGGTTCGTGCGTCGTGCACGTGTTT
CAAGGAGCATCGGAGCGGGGCGCTCCGGGGCCCCTTGCTGCCTGCGCGAG
CCGAAACCCCCGGGTGTCACTGCTGCTGCTGCTGTGCTTCGATTGCTTTT
GTGTGCGCGCGCCAGGCGTCTTTTGTGCTGTCTGTACGTCACATGTGCAC
AACGCGCGCAGGGTCCCACAATGCGGTCTATCCTAGATGTACATAGCTCT
ATTTACACTGCTGTGTAAACACTCTTGGCGTGAAGCCGAGCACCGAGATA
TGCAAGCACGCGGCAGCCGAGGATTGCCGAGACGGTGACGAGAAAAAAAA
AGAGATACAAAAAGTACATATTAGATCACCGGTTTTTAATTGAACGACGG
ATTTTGCGCGAGTATATGTATCTGGGATGGGGAAATAGGGGGTGAGTGTG
CCTACAACAGTCGTCCCTCTGGAACGACTTATTCGCAGAGTGGACGTAGA
CTGCTGGTATTTGTCATGCATTAATTGAAAAAGGCCGAGAGTGTCGCAAC
AAGAGCCGAAACAAAAAGGGGTGCCCATCAGAGGGGACCGCCGTGGTGGC
TGTTGGAGCACTCACTGCCTTGTTCGGTGGGTTTTGCCTCGTCTTGGGGG
CGCCTTGCTGGGTCTCGATGGATTTCATTAATCGTTTTCATCTGGAGCTT
GGTCGCGACGACGGAGATGAGAGCTTGACGCGTGTGTCGATGTGTTGTGT
TTCCTTCTCATTTATTTTGGCGACAGTTCCCCCCAGTGGAGACATGTACT
ACACCTTGCGGTGTACCTAGAGTCCTACACTTTGCAGTGCATTTGTCTGT
ACAACTAGAACCCATCGGGGTCACACAGGAGGGGGTGAACACTGGGGCTT
TTTCTTCTTTTTCATTTTATTTGTTTGCCCCACCTTCGTCCTGCGGTGCT
TGCCTTCATTTTTATCGCGAGAAGGGTTCAGCTGTCCCTTTCCCCTCGTC
AACGCGAATAGGTCGAAGTTTGGTACTCACGAGCTTTTCAGCTTCAATTG
GTTTCACCTGCAAAGTCGCAAAATAAACACCCCTCCTTGGGATTGAACTC
CAGACTTGGCTGCTAGTGGGTTCGAGGCTAAACCACTAGACCACCGGGGC
GAACGGTACTACCGTAGGTGACACAAGATACCACTGGACCGAATTTAAGA
GCTCGATTACTATGCCGTAACGAAGACGGCGCCATCACCAAACGATAGAT
TTTCGAACAGCCCTTGACTAGATATGTCCAACGCCACCCCTTCCGGCACT
CTCACCCCCCTTCGTTACGGAGTAATGCAGCTCTGAAATTCGGTCCGGGG
GGTGTGGTATCTTGTGTCACCTACGGTATTGCTGTATTACACTGCTTGCT
GTTTGCTGTTTTGCTGGCGAGGGCCTGCCTGCAGAGGAGGGAGAGAGAAG
AAGAAGGCCACGAAACGTTTCTCCCCCCGTGCCTCCGCTTGTCACGGCGT
GTCTTGCCAGCCCGTCCGTCTTCGCCTGCTTGCTTGCTTTTCTCCGAGAC
CCGAATCAATGCCCCGGTTTCCGGTGCTGGTTGTGTTGATGGTCCATCCC
TGCTGTTGTGTGTGCGTTGGTTGGGTTGGGGTTGTGGGTGTGTGTTTGGG
TTTTATGCCCGTCCCCTTTTTTTTTTTTTTTTTTTTTTTCAGGGAGGGCG
ATGGCCCGAAGCTGGTGAAGCGAGATGCCCCGCTCGTGCCGGGTGACCGC
TTGAAGGGTGGCCAGTATATATCCTTCTGCACGAGCATCCTTGCCACCGG
GTGCAAGCCGAAGTACTTCGAGGTAGGGTCGCGGCGGGTCACAGCTTGAC
ACCCGCGTCCGCGTGATGTTTTCACGCGGTTTTTACCTATTTTTACGGTG
GATGTGTTTTTCGGGCAAGCAGATCCCCCACAGGGCGTGCAAGCACCAGC
CCTGGTGCATATACGCTTTTATGCACCAGGAGCGCTCGGCACAGCGACCT
AGGCCTGAACCCGGCACACCAACCTAGCCTGAGGTTTGGGTGTGGGTTAG
GGTTTAGGTTGACCAGGATGTGCGTTAGGCCTACATACTGCTGTAGCGCC
GTGGTTTTACGGTAGCCAGAGGGCCGGAAACCTGGCGTAGGCCTTCTTTT
TCGCGTCTACCTCCAACTGCAACCTGGGTCTAGGTCTCCTGGTGCATATA
AGCTTGCACCAGCGCTTGTGTTTGGACGCGCGCTGAAGCAAATCCTTGTG
CGTCGGGGGTCTTCCCTTACCCTCGCCCCCCCCCCCCCCCGACCTCCCCT
TGACATGCAGTATTGTAGCAAAGCAACTGCGCACTGCTGTGTGTGCTTCG
ATTGCTTGGTTTCGCTCTTGTTTGACGTGAGCGTCTTGCGCCCGGCACCT
ATGGGTTTCCCGGCGGGTTTCCCATCCGGGGAGGCTACAATATGTAGGCC
GTTTTGTTTTCCCTGGGTACTAGGGTATGAGATCCCTCCGCCGGCGGGCC
CCCCAGAAGCCAGGCATGGGCGCGGACAGTAATACAGACCCTCACGGCAC
CCACACGCAGGAAACAGCGATAGGCGTTGTGGTTGAAATCAGAGCCCCAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTACCGATGCTCAATGTC
TAGCCCCCCCCCCTCCCGGCCCACCCCACCCCCCCTCCTTTGTGCGTCGT
GTTTTTTTCTCGGGGGGAGAGCAGTTAGGCCGCGATGGCTCTCTCGGGGT
GTACGGCGGAAAGTCGCCCTACGCGCAGAAGGCCAAGCTGTGGACCGCGG
GAACTGCCGCCAAGGGCGGCGCCACGGGCTCCTCGTCGTACGAGCTGGTG
TACAGCGGCGAGCGTGTGGTGCTGAACAAGGACGGGAAGGTGGGTGCTTT
GGGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
GCCTGCCTGTCTGCCTGCCTGCGTTGCCTGCCTAGGTATCCTCTGAGGAT
CGAAGATGCCGCGATGGAAGTGGCAGGGGTCATCTATCTATTTATCGATC
GTTTGTTCGTTTGCCTTGTGTGGTTTTGCGCCGCTCTCTTCTCTCTCTTT
GGTACTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGGCTTGTTGCTCTT
GTGTGTTGAGTGCGTGCCAACGAATCAAAACGGTGTGTGCCTACGTGCTT
TTTTCTTATCCTGGAGCCAAAAGACTGAATGAACGACGACTTGGTTGGAC
ACGGCGATTTTTCCCTTCTTCGTTTCGTGTGTGTGTGTGTGTGTGTGTTT
TTTTCTTTTTTGCGCGAAGCAGGTCAAGTGGTCGGCCGCGGTTAGGAGCC
TGCCCAAGAACATGCAGCCGTGGCCTCTCTCGAAGTAA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6474:3729..9616- >mRNA_L-elsbetiae_contig6474.15153.1 ID=mRNA_L-elsbetiae_contig6474.15153.1|Name=mRNA_L-elsbetiae_contig6474.15153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig6474:3729..9616- (Laminarionema elsbetiae ELsaHSoW15) GACAAGGGCGAGCCCCTGGTGTCCCCCGCCCGAAACTTCAGCCCCATCAC GGTGGGAAAGCGGTTGCTCAAGCCCTCGCCCCCTCGCGTCAAAAGGGTCG TTCGGAGGCCGGCGGCATATGACAAGGGCGAGCCCCTGGTGTCCCCCGCC CGAAACTTCAGCCCCATCACGGTGGGAAAGCGGTTGCTCAAGCCCTCGCC CCCTCGCGTCAAAAGGGTCGTTCGGAGGCCGGCGGCATATGAAGAGAGCA TCCTGTCCAGGTACCTGTCGCAGAGCCTCCCGGCGAAGCTGTCGGCGGTG CTGTCGGTCGTGGCCATCGCCGTGGCTTTGGCGCTCTTCTTCGGGAAGAG AGCATCCTGTCCAGGTACCTGTCGCAGAGCCTCCCGGCGAAGCTGTCGGC GGTGCTGTCGGTCGTGGCCATCGCCGTGGCTTTGGCGCTCTTCTTCGGGG AGGGCGATGGCCCGAAGCTGGTGAAGCGAGATGCCCCGCTCGTGCCGGGT GACCGCTTGAAGGGTGGCCAGTATATATCCTTCTGCACGAGCATCCTTGC CACCGGGTGCAAGCCGAAGTACTTCGAGGGAGGGCGATGGCCCGAAGCTG GTGAAGCGAGATGCCCCGCTCGTGCCGGGTGACCGCTTGAAGGGTGGCCA GTATATATCCTTCTGCACGAGCATCCTTGCCACCGGGTGCAAGCCGAAGT ACTTCGAGTTAGGCCGCGATGGCTCTCTCGGGGTGTACGGCGGAAAGTCG CCCTACGCGCAGAAGGCCAAGCTGTGGACCGCGGGAACTGCCGCCAAGGG CGGCGCCACGGGCTCCTCGTCGTACGAGCTGGTGTACAGCGGCGAGCGTG TGGTGCTGAACAAGGACGGGAAGTTAGGCCGCGATGGCTCTCTCGGGGTG TACGGCGGAAAGTCGCCCTACGCGCAGAAGGCCAAGCTGTGGACCGCGGG AACTGCCGCCAAGGGCGGCGCCACGGGCTCCTCGTCGTACGAGCTGGTGT ACAGCGGCGAGCGTGTGGTGCTGAACAAGGACGGGAAGGTCAAGTGGTCG GCCGCGGTTAGGAGCCTGCCCAAGAACATGCAGCCGTGGCCTCTCTCGAA GTAAGTCAAGTGGTCGGCCGCGGTTAGGAGCCTGCCCAAGAACATGCAGC CGTGGCCTCTCTCGAAGTAA back to top
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