mRNA_L-elsbetiae_contig6460.15139.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6460.15139.1
Unique NamemRNA_L-elsbetiae_contig6460.15139.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6460.15139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6460contigL-elsbetiae_contig6460:3547..6854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1434
Cds size771
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6460.15139.1prot_L-elsbetiae_contig6460.15139.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6460 3547..5347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.3048804-CDS-L-elsbetiae_contig6460:3546..39821622816713.3048804-CDS-L-elsbetiae_contig6460:3546..3982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6460 3547..3982 +
1691683759.17253-CDS-L-elsbetiae_contig6460:3546..39821691683759.17253-CDS-L-elsbetiae_contig6460:3546..3982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6460 3547..3982 +
1622816713.3162868-CDS-L-elsbetiae_contig6460:4339..45591622816713.3162868-CDS-L-elsbetiae_contig6460:4339..4559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6460 4340..4559 +
1691683759.1883738-CDS-L-elsbetiae_contig6460:4339..45591691683759.1883738-CDS-L-elsbetiae_contig6460:4339..4559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6460 4340..4559 +
1622816713.3269055-CDS-L-elsbetiae_contig6460:5232..53471622816713.3269055-CDS-L-elsbetiae_contig6460:5232..5347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6460 5233..5347 +
1691683759.2025752-CDS-L-elsbetiae_contig6460:5232..53471691683759.2025752-CDS-L-elsbetiae_contig6460:5232..5347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6460 5233..5347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816713.3374078-UTR-L-elsbetiae_contig6460:5347..56171622816713.3374078-UTR-L-elsbetiae_contig6460:5347..5617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6460 5348..5617 +
1691683759.2178178-UTR-L-elsbetiae_contig6460:5347..56171691683759.2178178-UTR-L-elsbetiae_contig6460:5347..5617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6460 5348..5617 +
1622816713.3561049-UTR-L-elsbetiae_contig6460:6103..62601622816713.3561049-UTR-L-elsbetiae_contig6460:6103..6260Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6460 6104..6260 +
1691683759.2261827-UTR-L-elsbetiae_contig6460:6103..62601691683759.2261827-UTR-L-elsbetiae_contig6460:6103..6260Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6460 6104..6260 +
1622816713.3659995-UTR-L-elsbetiae_contig6460:6619..68541622816713.3659995-UTR-L-elsbetiae_contig6460:6619..6854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6460 6620..6854 +
1691683759.2343533-UTR-L-elsbetiae_contig6460:6619..68541691683759.2343533-UTR-L-elsbetiae_contig6460:6619..6854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6460 6620..6854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6460.15139.1

>prot_L-elsbetiae_contig6460.15139.1 ID=prot_L-elsbetiae_contig6460.15139.1|Name=mRNA_L-elsbetiae_contig6460.15139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
SAVFKVWYSFLSFAIEENVRIVAGSRSNAALTFATPGLEPTTPPPAATPA
SASYRDAAARPLPACPPAGKTAGAPASAIAAVTAPAAALRRLPRLGGAEK
MGIPRPMGSVKNLPVFESLCKGKTLALLDTPLPPVQGSGADGGEEDAAPS
PAPSSSCSTYCSPTSSPSAAAALDDTQLEGDSYFSRFSPPSLSAAVLKPP
PGFGTACSSTTGGGWSSISTDAASWTSSSGFSSEHDGDDDVADDGLEDDN
GLGFLQ*
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mRNA from alignment at L-elsbetiae_contig6460:3547..6854+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6460.15139.1 ID=mRNA_L-elsbetiae_contig6460.15139.1|Name=mRNA_L-elsbetiae_contig6460.15139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3308bp|location=Sequence derived from alignment at L-elsbetiae_contig6460:3547..6854+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGCGGTTTTCAAGGTATGGTACTCTTTCCTGTCCTTCGCCATCGAGGA
AAATGTCCGGATCGTCGCCGGCAGCCGCTCCAACGCCGCTCTTACCTTTG
CCACTCCTGGTCTTGAGCCAACCACTCCTCCTCCCGCGGCCACACCGGCA
AGCGCAAGCTACAGAGACGCCGCCGCCCGTCCGCTCCCCGCTTGCCCCCC
AGCGGGCAAGACGGCGGGCGCTCCAGCTTCCGCCATCGCCGCCGTCACCG
CGCCGGCTGCAGCACTGCGGAGGCTGCCGCGTCTTGGAGGCGCGGAAAAG
ATGGGCATCCCTCGACCGATGGGCAGCGTGAAGAACCTGCCGGTGTTCGA
GAGCCTCTGCAAGGGCAAGACTCTTGCTCTACTGGACACTCCCCTTCCTC
CCGTGCAGGGTAGCGGTGCTGACGGTGGTGAAGAGGGTAAGCGCAAGTCC
CAGCACCTCCAACAAGATGCCCACACGAACGACTAAAATATGAACTCTGT
GTGGAAACTTGCGGGTACTGTCGATTCGCCACGTTTGCAACGGCCGTGCC
AGACGAGAGCGGCACTAGACTGTTTTATGACCCAAAACCGTATGTCGATA
CTTTATACAAAAATCCAAGCACATGGAAAAGTTCAAGGTTTTTGTATTTT
TTTGCAGTCGGCGTTGTTTTGGCGTGGTTTTGAAGAGAGGAGAGTTCAAA
GCAGGCAGGGTGACCCTAGTCTCATCTGATCTGGGCGACTGACGTACCCT
GGCGTTTCGTTGCAACCTTCCGACGGCCTCGAACTTGCGGCAGACGCTGC
TCCCTCGCCGGCCCCCAGTTCTTCGTGCTCCACCTACTGCAGCCCTACTT
CGTCTCCGTCGGCGGCTGCGGCTCTAGATGATACTCAGCTCGAGGGCGAC
TCGTACTTCTCGCGTTTCTCGCCTCCTTCATTGTCAGCGGCGGTGCTCAA
GCCACCCCCCGGCTTCGGGACAGCGTGCTCGTCCACGACTGGCGGCGGCT
GGAGCTCTATCAGGTACCGAGGGCAATAATGGTCGATCAGGGCAAAGAGT
AGGGTGAAACCGGGCTCTTTTCGCAAAAGGGTTCGTTTGCAAGGCTCTGC
TGAGCAGGCCCACCGCGTTCCGTCGTGCTCGATCGCGACTCCCGGATTGC
AAGACTGAACTGCCGTAAACTTTGGATCCAATCAACGTCTATCGCCGCAT
TGTATGTGAAGTACCTCCCCTTTCTCGCACACTAGGTAGATATGTTGTTG
CATGAGATTAGAATGTCAAATTTTCATGTTTTTCGGGTACATACATATCT
GTAGTTGTCTTGATCTGCAGTTATCTTGAAAGGCTACAGGTAACCCATGT
AGCTGGTTCTGAAACGCCAGATCGAAGTCCAACGTCTTGTAAGACACCAA
TCTAAGCGTGATGTATGTACTTCTATACGGTGAGGAGGGGAAGGCGTTCG
TAGAGAACTTTGCCTCCGGGCTGTTGGAATATGGGTCAAACCACTGGCGT
CACGGGCGGGTCGATCAACCACGGAATGCTTGCCCTGAGTCCGCGTGCTT
CGAACAACAACAGTTCCGTGTGCGGCATTGACGATACTTGTCCGCAAGGA
CTTTGTGCACATCCAATACAATCCTACCCGCTGACCTGCCATGGACCCGC
CCTCGCCATTCCCTCACGCTCCTCCTAAATGCGCAGCACCGATGCCGCGT
CTTGGACGTCATCGAGTGGCTTCTCCTCCGAGCACGATGGCGACGACGAC
GTCGCCGATGACGGTCTCGAGGATGACAACGGGTTGGGCTTCCTGCAATA
ACTCGATGGGCCCCTGCCTGATCCTCGGAACTCGGTTGCTGCTGCTGCTG
CATCCGTGGGGGATCGCGCGCCCAGCACGAACGCCCGCCTTCCGTTCTTC
GTCGGGCTGCACTCGGACACCACTACTGCCAGCACCAGCACGGCCACAAG
CCTCAGGAACGCCCCGGGCGCCAGTATTGCTGCAAGTATTGGTGGAGTCA
TGTTCAACCCCCTTCTCCCCGGCGGTGGCGGGGGTAGCCAGCGGGGCACC
GGCGGCGGCGACATGACGGTGGTAAGAGATTCAGATCTTTGATATTTGAT
TTTTGGCTTGCCGTGCCCAACCTCTGTAGTGGACAGGCTCAACGCTCGAA
TTTGTTGGCATTCCTACAAACGGCATTGTGCATCTGTGTCAGTCGAACGG
GATGTCGGTCTTGGCGTACGTGTGGGGCAGGCCAGAGGGTACAAGCGCCG
CCGTGCCCCGGACGGTGACAACTGCTTGTAAGCAAGGGGCCACGTGTTCC
AGGCGTGTCTCCTCGCCACGGTGTGAAAAATTCCGTACGTATAGTACTTA
CATATGCGTGGAACTTAAGGGGAAGTTGTTCACGACCCATGGCTCCGTGG
CGTCTACCCTGATTTCGCCGAAGCTAAAGTATGCCCCCGTTTTCTTGAGA
AGATGGCTTCCCTGTGCTGTCACAGCTACGGCATTCTGGGCAGCGGAAGC
AAGAGGCTGACTTGCCCCCGTTTTTCCTTCCGTTTGTTGCCATCCCCTCT
CTTGCAGTTCGATTCGGGCGGCAGCAGCGACAGCGGGTATGGCAACCGCG
GCGGCTACTACCGTCTTGATGGCCCCACCCCTACCGTCGTCGAGCCGTTC
AATGCAGCGTACGGGCACCACGTGGCTCGAGCCGCCGAATACTACCGTCA
ACAGTCCTACGCCGGTAAGAGAGAGGGGAGGCGGGGAGAGAGAGAGAGGG
ATACCGTGGGTGGCAGAGAGAGGGAAAGGAGGAGACAGAAGCCAGTTGGG
CTCCGATCATTTCTGGTCGATATCACACGAGATGATGCCTGCTGTTCCAT
GCATTTCAGGTCCAAACGATGAAGAAGGTTGGACACGTCAGTATTCCGAC
CATTTCGGTAGCAGCGATGATGTTATCTGTTCGCGGTATGGTTGGCACAG
AAATCAAGACATAAACTGACCCACCAAGAATACCCTCCCTCTTATTGATC
TGCCAATTGCTCCGCCCCTGCTGAACCCTGCATGCTCTAACTTGTTTGCC
GTCCGTGCGATGACTGCGGCCAGGTGCCGCTAGGCACAGCACGTGCAACG
TCGACGCCACAGACTTCCTCTAGGCTGCCCTGTGGATTGACCCCATTCGT
GAGCACTGAAGACTCGAGTTTGATGGGTGCGGTTCAGTGTTCCAGAATGT
CGTAAGTGGCGCCCCTTTCCGCTGGGGGGGGCGGACTCTAGGGCGACGCT
TTGACGATTTTTCGTTGCCTTACATGTTGTTTAAGGTCCCTAGCTCACAA
GACGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6460:3547..6854+

>mRNA_L-elsbetiae_contig6460.15139.1 ID=mRNA_L-elsbetiae_contig6460.15139.1|Name=mRNA_L-elsbetiae_contig6460.15139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig6460:3547..6854+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGCGGTTTTCAAGGTATGGTACTCTTTCCTGTCCTTCGCCATCGAGGA
AAATGTCCGGATCGTCGCCGGCAGCCGCTCCAACGCCGCTCTTACCTTTG
CCACTCCTGGTCTTGAGCCAACCACTCCTCCTCCCGCGGCCACACCGGCA
AGCGCAAGCTACAGAGACGCCGCCGCCCGTCCGCTCCCCGCTTGCCCCCC
AGCGGGCAAGACGGCGGGCGCTCCAGCTTCCGCCATCGCCGCCGTCACCG
CGCCGGCTGCAGCACTGCGGAGGCTGCCGCGTCTTGGAGGCGCGGAAAAG
ATGGGCATCCCTCGACCGATGGGCAGCGTGAAGAACCTGCCGGTGTTCGA
GAGCCTCTGCAAGGGCAAGACTCTTGCTCTACTGGACACTCCCCTTCCTC
CCGTGCAGGGTAGCGGTGCTGACGGTGGTGAAGAGGAGCGCGGTTTTCAA
GGTATGGTACTCTTTCCTGTCCTTCGCCATCGAGGAAAATGTCCGGATCG
TCGCCGGCAGCCGCTCCAACGCCGCTCTTACCTTTGCCACTCCTGGTCTT
GAGCCAACCACTCCTCCTCCCGCGGCCACACCGGCAAGCGCAAGCTACAG
AGACGCCGCCGCCCGTCCGCTCCCCGCTTGCCCCCCAGCGGGCAAGACGG
CGGGCGCTCCAGCTTCCGCCATCGCCGCCGTCACCGCGCCGGCTGCAGCA
CTGCGGAGGCTGCCGCGTCTTGGAGGCGCGGAAAAGATGGGCATCCCTCG
ACCGATGGGCAGCGTGAAGAACCTGCCGGTGTTCGAGAGCCTCTGCAAGG
GCAAGACTCTTGCTCTACTGGACACTCCCCTTCCTCCCGTGCAGGGTAGC
GGTGCTGACGGTGGTGAAGAGGACGCTGCTCCCTCGCCGGCCCCCAGTTC
TTCGTGCTCCACCTACTGCAGCCCTACTTCGTCTCCGTCGGCGGCTGCGG
CTCTAGATGATACTCAGCTCGAGGGCGACTCGTACTTCTCGCGTTTCTCG
CCTCCTTCATTGTCAGCGGCGGTGCTCAAGCCACCCCCCGGCTTCGGGAC
AGCGTGCTCGTCCACGACTGGCGGCGGCTGGAGCTCTATCAGACGCTGCT
CCCTCGCCGGCCCCCAGTTCTTCGTGCTCCACCTACTGCAGCCCTACTTC
GTCTCCGTCGGCGGCTGCGGCTCTAGATGATACTCAGCTCGAGGGCGACT
CGTACTTCTCGCGTTTCTCGCCTCCTTCATTGTCAGCGGCGGTGCTCAAG
CCACCCCCCGGCTTCGGGACAGCGTGCTCGTCCACGACTGGCGGCGGCTG
GAGCTCTATCAGCACCGATGCCGCGTCTTGGACGTCATCGAGTGGCTTCT
CCTCCGAGCACGATGGCGACGACGACGTCGCCGATGACGGTCTCGAGGAT
GACAACGGGTTGGGCTTCCTGCAATAACACCGATGCCGCGTCTTGGACGT
CATCGAGTGGCTTCTCCTCCGAGCACGATGGCGACGACGACGTCGCCGAT
GACGGTCTCGAGGATGACAACGGGTTGGGCTTCCTGCAATAA
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