mRNA_L-elsbetiae_contig646.15133.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig646.15133.1
Unique NamemRNA_L-elsbetiae_contig646.15133.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig646.15133.1 vs. uniprot
Match: A0A6H5KUF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.280e-11
Identity = 44/97 (45.36%), Postives = 53/97 (54.64%), Query Frame = 3 
Query:  261 TENPQLVATLPRPQQGEGEG-GSDWHLCHDEDGNAYYYSETTG-------ESVWAELGEGGTGAGDAPQEEQPHIQHQPLEGWSFHRDPETGHGYYL 527
            T+N  L A+     Q  GEG  ++WHLCHD++GNAYYYSETTG       ES  A   E   G+ +     Q   Q Q L+ WS   DP TGH YYL
Sbjct:  193 TQNQHLTASTT---QTGGEGLEAEWHLCHDDEGNAYYYSETTGDDGKGVAESTTAHGDESRRGSEELASVGQKGQQQQLLDDWSLREDPTTGHAYYL 286
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig646.15133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUF8_9PHAE7.280e-1145.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig646contigL-elsbetiae_contig646:6759..8348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size530
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig646.15133.1prot_L-elsbetiae_contig646.15133.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig646 6759..8336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.656952-CDS-L-elsbetiae_contig646:6758..68401622816712.656952-CDS-L-elsbetiae_contig646:6758..6840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 6759..6840 -
1691683758.6771717-CDS-L-elsbetiae_contig646:6758..68401691683758.6771717-CDS-L-elsbetiae_contig646:6758..6840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 6759..6840 -
1622816712.6749718-CDS-L-elsbetiae_contig646:7169..72311622816712.6749718-CDS-L-elsbetiae_contig646:7169..7231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 7170..7231 -
1691683758.6900144-CDS-L-elsbetiae_contig646:7169..72311691683758.6900144-CDS-L-elsbetiae_contig646:7169..7231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 7170..7231 -
1622816712.6890888-CDS-L-elsbetiae_contig646:7964..83361622816712.6890888-CDS-L-elsbetiae_contig646:7964..8336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 7965..8336 -
1691683758.7083652-CDS-L-elsbetiae_contig646:7964..83361691683758.7083652-CDS-L-elsbetiae_contig646:7964..8336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig646 7965..8336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.7025511-UTR-L-elsbetiae_contig646:8336..83481622816712.7025511-UTR-L-elsbetiae_contig646:8336..8348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig646 8337..8348 -
1691683758.7217104-UTR-L-elsbetiae_contig646:8336..83481691683758.7217104-UTR-L-elsbetiae_contig646:8336..8348Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig646 8337..8348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig646.15133.1

>prot_L-elsbetiae_contig646.15133.1 ID=prot_L-elsbetiae_contig646.15133.1|Name=mRNA_L-elsbetiae_contig646.15133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MVATETKNAITEKRKRQKTTARKRKRKRARTRVARPAGGATRKKRLHFSM
VTMVQQQQQQQPRRRCFPRPRRLLHPQQQRNRPLKTLSWSPPSRDRNKAK
VKVEATGTSATTKTATLTTIAKPPESLCGPSWERAERAQAMPPKRSSPTS
STSRSKGGLSTATPRLDTATTS
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mRNA from alignment at L-elsbetiae_contig646:6759..8348-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig646.15133.1 ID=mRNA_L-elsbetiae_contig646.15133.1|Name=mRNA_L-elsbetiae_contig646.15133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1590bp|location=Sequence derived from alignment at L-elsbetiae_contig646:6759..8348- (Laminarionema elsbetiae ELsaHSoW15)
CGAGAGCAGGCGATGGTGGCGACCGAGACAAAGAACGCGATCACAGAAAA
AAGAAAAAGACAAAAGACAACGGCAAGGAAAAGGAAAAGGAAAAGGGCCA
GGACAAGAGTAGCAAGACCAGCAGGAGGGGCGACAAGAAAAAAAAGGCTT
CATTTTTCGATGGTGACGATGGTCCAGCAGCAGCAGCAGCAGCAGCCCCG
CCGTCGATGTTTCCCCCGCCCCCGCCGCCTACTGCACCCTCAACAGCAGC
GCAACAGGCCACTGAAAACCCTCAGTTGGTCGCCACCCTCCCGAGACCGC
AACAAGGCGAAGGTGAAGGTGGAAGCGACTGGCACCTCTGCCACGACGAA
GACGGCAACGCTTACTACTATAGCGAAACCACCGGTAAGGAAGGGGCACG
TTTTGGTGACGTGTACTGATGTACTTCGTACAAGAGCTCGGGGCGCACGG
GCCCCCCTCGCCCTGTTTGAATTTGTGTTGGGCCACCACCATGTTGAACT
GCGTTTGGCAAAAGCCTACCGAGAAATGAGCGCTTTGCGTACCAAGTGGT
TCATTACCTGTATGAAGTATGAAGTCTATCTGTACATACATACTTAGCAA
AAACATAGGAGTATTATTTTCAAAATAATATTTCAAAACCGTTTCGCGTG
GATCATACCAACTCACGCACGGAACGCACACTGATCTTACACAGACTCTG
AGCGACAGAGAAGGAAAGCTACAAACAGACAGGTCGGCAGACAGGCCGAG
AGAGAGTGAGAGAGAGACGTGTGAGAGACAGAGAGAGACAGAGAGAGAGA
AAGAGAGAGAGACAGGGAGACAGAGAGAAAACCCGACAAACCAACTGCGC
GTTTAAACTATTCAGCAAATGCCGACAAATACTGAACTATGGATTGTGTT
TGACGTTGACACACCAGCGTTATCGAGCGTAAACAAATGTTTCGTTAATG
TGTACGCGTGCAGCAGATCGAATACCACGCGCACACGCACAGACACACAC
ACACCGCTCGTGACACGTCGCTTGTATATCTACAGCATCTAAAAAAACAC
GTGCACACAGGAGCGTATGCGAACACAATCCTCACCAAGCTTCGTTGTCA
TGCTGTCTGTCTTCCAGGAGAGTCTGTGTGGGCCGAGCTGGGAGAGGGCG
GAACGGGCGCAGGCGATGCCCCCCAAGAGGTAACCCCCCCACCGAAAACA
TCAACTGCAGCGTTGAGCGACGTGGGGTTTACGCCAAGAGTAGTTGTGTA
CAGTCATGCTGTTTCAGTGCAATGCTGGCTACTCTTCGTTCGTTGCGCGG
TACATCTCTAGAAGCCAAACGCCTTCAGTCAATGCTCCACACGCACAGAG
ACATTTAGAGACCTCTTCCTTTTGTACACTTATCTTCGGCGAGAAACTTA
CTCCCCTCGATGGTTAGGATTTCGATTGTTGTTAGGGCTAGGCCGTGTGA
AAGGTTGAAGGGCTACAACTATGCTTAACAAGTAACGCCTCCGCTCGAAT
CATAACAGGAGCAGCCCCACATCCAGCACCAGCCGCTCGAAGGGTGGTCT
TTCCACCGCGACCCCGAGACTGGACACGGCTACTACCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig646:6759..8348-

>mRNA_L-elsbetiae_contig646.15133.1 ID=mRNA_L-elsbetiae_contig646.15133.1|Name=mRNA_L-elsbetiae_contig646.15133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig646:6759..8348- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCGACCGAGACAAAGAACGCGATCACAGAAAAAAGAAAAAGACA
AAAGACAACGGCAAGGAAAAGGAAAAGGAAAAGGGCCAGGACAAGAGTAG
CAAGACCAGCAGGAGGGGCGACAAGAAAAAAAAGGCTTCATTTTTCGATG
GTGACGATGGTCCAGCAGCAGCAGCAGCAGCAGCCCCGCCGTCGATGTTT
CCCCCGCCCCCGCCGCCTACTGCACCCTCAACAGCAGCGCAACAGGCCAC
TGAAAACCCTCAGTTGGTCGCCACCCTCCCGAGACCGCAACAAGGCGAAG
GTGAAGGTGGAAGCGACTGGCACCTCTGCCACGACGAAGACGGCAACGCT
TACTACTATAGCGAAACCACCGATGGTGGCGACCGAGACAAAGAACGCGA
TCACAGAAAAAAGAAAAAGACAAAAGACAACGGCAAGGAAAAGGAAAAGG
AAAAGGGCCAGGACAAGAGTAGCAAGACCAGCAGGAGGGGCGACAAGAAA
AAAAAGGCTTCATTTTTCGATGGTGACGATGGTCCAGCAGCAGCAGCAGC
AGCAGCCCCGCCGTCGATGTTTCCCCCGCCCCCGCCGCCTACTGCACCCT
CAACAGCAGCGCAACAGGCCACTGAAAACCCTCAGTTGGTCGCCACCCTC
CCGAGACCGCAACAAGGCGAAGGTGAAGGTGGAAGCGACTGGCACCTCTG
CCACGACGAAGACGGCAACGCTTACTACTATAGCGAAACCACCGGAGAGT
CTGTGTGGGCCGAGCTGGGAGAGGGCGGAACGGGCGCAGGCGATGCCCCC
CAAGAGGAGAGTCTGTGTGGGCCGAGCTGGGAGAGGGCGGAACGGGCGCA
GGCGATGCCCCCCAAGAGGAGCAGCCCCACATCCAGCACCAGCCGCTCGA
AGGGTGGTCTTTCCACCGCGACCCCGAGACTGGACACGGCTACTACCTCC
GAGCAGCCCCACATCCAGCACCAGCCGCTCGAAGGGTGGTCTTTCCACCG
CGACCCCGAGACTGGACACGGCTACTACCTCC
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