mRNA_L-elsbetiae_contig6451.15123.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6451.15123.1
Unique NamemRNA_L-elsbetiae_contig6451.15123.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: D8LB42_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB42_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 1.450e-89
Identity = 195/236 (82.63%), Postives = 209/236 (88.56%), Query Frame = 1 
Query:    1 MAIGRVLARGEIDVEWVGRSNGWTALMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCLRCLASSIGHGYLVDWLFAMGVADGEDGGCACSGGAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAALTEWLGGLGLGAYESTLVSQGFDTLEAMSTATESDLEAMGFKKGHLRLLLARAPSAA 708
            +A+GRVLA G++DVEWVGR NGWTA+MEAAEHGSLEAV +LLD GADLEHTN KGLTPLQLAVR+GHLGVTEELL RGARPNV +KAG CLRCLA+S+GHGYL DWLFAMGVADG DGGCACSGGAK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        +AALTEWL  LGL AYES LVS+GFDTL+AM  ATE DLE MGFKKGHLRLLLARAPSA+
Sbjct:  260 LAMGRVLASGDVDVEWVGRGNGWTAVMEAAEHGSLEAVSFLLDKGADLEHTNNKGLTPLQLAVRSGHLGVTEELLIRGARPNVTTKAGLCLRCLANSMGHGYLADWLFAMGVADGVDGGCACSGGAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSEAGAPTAALTEWLASLGLSAYESRLVSEGFDTLDAMCAATEPDLEEMGFKKGHLRLLLARAPSAS 495
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: A0A6H5KQU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU2_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 1.180e-86
Identity = 161/237 (67.93%), Postives = 176/237 (74.26%), Query Frame = 1 
Query:    1 MAIGRVLARGEIDVEWVGRSNGWTALMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCLRCLASSIGHGYLVDWLFAMGVADGEDGGCACSGGAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SAALTEWLGGLGLGAYESTLVSQGFDTLEAMSTATESDLEAMGFKKGHLRLLLARAPSAA 708
            +A+GRVLA G++DVE VGR NGWTA+MEAAEHGSLEAV +LLD GADLE TN KGLTPLQLAVR+GHLGVTEELL RGARPNV +KAG CLRCLA+S+GH YL DWLFAMGVADG DGGCACSGGAK+                                XXXXXXXXX        +AALTEWL  LGL AYES LVS+GFDTL+AM   TE DLEAMGFKKGHLRLLLARAPSA+
Sbjct:  260 LAMGRVLASGDVDVECVGRGNGWTAVMEAAEHGSLEAVSFLLDKGADLERTNNKGLTPLQLAVRSGHLGVTEELLIRGARPNVTTKAGLCLRCLANSMGHDYLADWLFAMGVADGVDGGCACSGGAKSASGGGDEPASSANAVRARQHTGGSAHSNGGAPXXXXXXXXXAGSETGAPTAALTEWLASLGLSAYESRLVSEGFDTLDAMCAVTEPDLEAMGFKKGHLRLLLARAPSAS 496
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: A0A7M7G8I7_NASVI (Uncharacterized protein n=2 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7G8I7_NASVI)

HSP 1 Score: 56.6 bits (135), Expect = 1.630e-6
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   61 NGWTALMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGR 267
            +G   L  AA++G  E V YLLD GAD+  T+K G+T L  A+  GH    + LL +GA+PN  +  G+
Sbjct:   35 DGRMPLHYAADYGQCEVVRYLLDKGADINATDKHGITTLLAAIWEGHTSCVKLLLEKGAKPNGLTPDGK 103
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: UPI00174CFAD4 (rabankyrin-5 isoform X8 n=1 Tax=Myotis myotis TaxID=51298 RepID=UPI00174CFAD4)

HSP 1 Score: 59.3 bits (142), Expect = 4.750e-6
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   76 LMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCL----RCLASSIGHGYL 309
            L  AAE G+  A  +L  SGA + H NK G TPL  A R G   +T ELL +GA PN++++    L      LASS+G  YL
Sbjct:  462 LQRAAEAGNEAAALFLATSGAQVNHRNKWGETPLHTACRHGLANLTAELLQQGANPNLQTEEAPPLPKEAASLASSVGSVYL 543
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: UPI00174EB485 (rabankyrin-5 isoform X6 n=1 Tax=Myotis myotis TaxID=51298 RepID=UPI00174EB485)

HSP 1 Score: 59.3 bits (142), Expect = 4.760e-6
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   76 LMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCL----RCLASSIGHGYL 309
            L  AAE G+  A  +L  SGA + H NK G TPL  A R G   +T ELL +GA PN++++    L      LASS+G  YL
Sbjct:  462 LQRAAEAGNEAAALFLATSGAQVNHRNKWGETPLHTACRHGLANLTAELLQQGANPNLQTEEAPPLPKEAASLASSVGSVYL 543
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: UPI00174EBED0 (rabankyrin-5 isoform X5 n=1 Tax=Myotis myotis TaxID=51298 RepID=UPI00174EBED0)

HSP 1 Score: 59.3 bits (142), Expect = 4.780e-6
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   76 LMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCL----RCLASSIGHGYL 309
            L  AAE G+  A  +L  SGA + H NK G TPL  A R G   +T ELL +GA PN++++    L      LASS+G  YL
Sbjct:  462 LQRAAEAGNEAAALFLATSGAQVNHRNKWGETPLHTACRHGLANLTAELLQQGANPNLQTEEAPPLPKEAASLASSVGSVYL 543
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: UPI00174D01A6 (rabankyrin-5 isoform X3 n=1 Tax=Myotis myotis TaxID=51298 RepID=UPI00174D01A6)

HSP 1 Score: 59.3 bits (142), Expect = 4.840e-6
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   76 LMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCL----RCLASSIGHGYL 309
            L  AAE G+  A  +L  SGA + H NK G TPL  A R G   +T ELL +GA PN++++    L      LASS+G  YL
Sbjct:  439 LQRAAEAGNEAAALFLATSGAQVNHRNKWGETPLHTACRHGLANLTAELLQQGANPNLQTEEAPPLPKEAASLASSVGSVYL 520
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: A0A7J7T300_MYOMY (Ankyrin repeat and FYVE domain containing 1 n=1 Tax=Myotis myotis TaxID=51298 RepID=A0A7J7T300_MYOMY)

HSP 1 Score: 59.3 bits (142), Expect = 4.850e-6
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   76 LMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCL----RCLASSIGHGYL 309
            L  AAE G+  A  +L  SGA + H NK G TPL  A R G   +T ELL +GA PN++++    L      LASS+G  YL
Sbjct:  462 LQRAAEAGNEAAALFLATSGAQVNHRNKWGETPLHTACRHGLANLTAELLQQGANPNLQTEEAPPLPKEAASLASSVGSVYL 543
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: A0A1Y0FFB5_RALSL (RNA-binding protein n=13 Tax=Burkholderiaceae TaxID=119060 RepID=A0A1Y0FFB5_RALSL)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-5
Identity = 35/68 (51.47%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   58 SNGWTALMEAAEHGSLEAVCYLLD---SGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTR-GARPNV 249
            +NG T L  AA+ G +E V  LLD   SGA +   NK+G TPLQ AV AGH GV E L+   G  PNV
Sbjct:  112 ANGTTLLASAAKRGHVETVRLLLDLPASGACINQANKRGETPLQRAVEAGHAGVVEVLVQHAGVDPNV 179
[Close]
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Match: A0A7R9X1V7_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9X1V7_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 1.220e-5
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   34 IDVEWVGRSNGWTALMEAAEHGSLEAVCYLLDSGADLEHTNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRS 255
            +D+E    SN  TAL  A   G  + V  L++ GAD+EH +KKG TPL LA  AGH+GV E      A    +S
Sbjct: 1063 LDLECETESNHDTALTLACAGGHEDLVRLLINRGADIEHRDKKGYTPLMLAATAGHVGVVEIXXANAANSEAQS 1136
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6451.15123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LB42_ECTSI1.450e-8982.63Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQU2_9PHAE1.180e-8667.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7M7G8I7_NASVI1.630e-642.03Uncharacterized protein n=2 Tax=Pteromalinae TaxID... [more]
UPI00174CFAD44.750e-643.90rabankyrin-5 isoform X8 n=1 Tax=Myotis myotis TaxI... [more]
UPI00174EB4854.760e-643.90rabankyrin-5 isoform X6 n=1 Tax=Myotis myotis TaxI... [more]
UPI00174EBED04.780e-643.90rabankyrin-5 isoform X5 n=1 Tax=Myotis myotis TaxI... [more]
UPI00174D01A64.840e-643.90rabankyrin-5 isoform X3 n=1 Tax=Myotis myotis TaxI... [more]
A0A7J7T300_MYOMY4.850e-643.90Ankyrin repeat and FYVE domain containing 1 n=1 Ta... [more]
A0A1Y0FFB5_RALSL1.090e-551.47RNA-binding protein n=13 Tax=Burkholderiaceae TaxI... [more]
A0A7R9X1V7_9CRUS1.220e-543.24Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6451contigL-elsbetiae_contig6451:4968..7048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.1
Seed ortholog evalue4.8e-78
Seed eggNOG ortholog2880.D8LB42
Preferred nameRIPK3
KEGG koko:K08332,ko:K08841,ko:K08847
KEGG Pathwayko04217,ko04621,ko04623,ko04668,map04217,map04621,map04623,map04668
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0001776,GO:0001817,GO:0001910,GO:0001914,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002685,GO:0002691,GO:0002694,GO:0002697,GO:0002703,GO:0002706,GO:0002709,GO:0002819,GO:0002822,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004704,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007249,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010921,GO:0010922,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030234,GO:0030334,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031341,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032649,GO:0032879,GO:0032944,GO:0033077,GO:0033674,GO:0035303,GO:0035306,GO:0035556,GO:0036211,GO:0038061,GO:0040012,GO:0042110,GO:0042127,GO:0042129,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043412,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045321,GO:0045859,GO:0045860,GO:0045935,GO:0045937,GO:0046006,GO:0046649,GO:0046777,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048535,GO:0048536,GO:0048538,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050670,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051249,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051270,GO:0051291,GO:0051336,GO:0051338,GO:0051340,GO:0051341,GO:0051345,GO:0051347,GO:0051351,GO:0051353,GO:0051716,GO:0060255,GO:0060544,GO:0060545,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070228,GO:0070232,GO:0070235,GO:0070265,GO:0070266,GO:0070663,GO:0071704,GO:0071840,GO:0080090,GO:0097190,GO:0097300,GO:0097435,GO:0098772,GO:0140096,GO:0140110,GO:1901564,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1990000,GO:2000106,GO:2000112,GO:2000145,GO:2000377,GO:2000379,GO:2000401,GO:2000404,GO:2000407,GO:2000449,GO:2000452,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0515@1,COG0666@1,KOG0192@2759,KOG4177@2759
EC2.7.11.1,2.7.12.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Exons3
Model size956
Cds size954
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6451.15123.1prot_L-elsbetiae_contig6451.15123.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6451 4968..7048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.7799258-CDS-L-elsbetiae_contig6451:4967..56091622816711.7799258-CDS-L-elsbetiae_contig6451:4967..5609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6451 4968..5609 -
1691683758.1472087-CDS-L-elsbetiae_contig6451:4967..56091691683758.1472087-CDS-L-elsbetiae_contig6451:4967..5609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6451 4968..5609 -
1622816711.7916427-CDS-L-elsbetiae_contig6451:6284..64621622816711.7916427-CDS-L-elsbetiae_contig6451:6284..6462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6451 6285..6462 -
1691683758.159644-CDS-L-elsbetiae_contig6451:6284..64621691683758.159644-CDS-L-elsbetiae_contig6451:6284..6462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6451 6285..6462 -
1622816711.804942-CDS-L-elsbetiae_contig6451:6914..70481622816711.804942-CDS-L-elsbetiae_contig6451:6914..7048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6451 6915..7048 -
1691683758.1728578-CDS-L-elsbetiae_contig6451:6914..70481691683758.1728578-CDS-L-elsbetiae_contig6451:6914..7048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6451 6915..7048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6451.15123.1

>prot_L-elsbetiae_contig6451.15123.1 ID=prot_L-elsbetiae_contig6451.15123.1|Name=mRNA_L-elsbetiae_contig6451.15123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=318bp
MAIGRVLARGEIDVEWVGRSNGWTALMEAAEHGSLEAVCYLLDSGADLEH
TNKKGLTPLQLAVRAGHLGVTEELLTRGARPNVRSKAGRCLRCLASSIGH
GYLVDWLFAMGVADGEDGGCACSGGAKTSGSGGGGGGDAASNGPQATRQH
SSGATAGSSNKGVPPPSREASPPSAASAALTEWLGGLGLGAYESTLVSQG
FDTLEAMSTATESDLEAMGFKKGHLRLLLARAPSAAASFGGGTGGGTGGG
GDGRDSRIVTCAAAAEPGPAPAGLARTGSMLSTAATVGCNLVGNGVEPAK
KTVRIATRQAGGKGEDEE
back to top

mRNA from alignment at L-elsbetiae_contig6451:4968..7048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6451.15123.1 ID=mRNA_L-elsbetiae_contig6451.15123.1|Name=mRNA_L-elsbetiae_contig6451.15123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2081bp|location=Sequence derived from alignment at L-elsbetiae_contig6451:4968..7048- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATCGGGCGGGTGCTGGCGAGGGGTGAGATCGACGTGGAGTGGGT
CGGCAGGAGCAACGGCTGGACGGCCCTGATGGAGGCCGCTGAGCATGGGT
CGCTGGAGGCGGTTTGCTACCTGCTGGACTCGGGGTGAGCTGTTTGGGTC
GGTTAGGATCGTGGTGTTTGTGTGTGCTAGATACCTAACTTGCAAGTACC
CATCGCGCCGGTTTTTTTCCCGGAGAGAGACTCTGGGGTCATTGCGGTCG
AGGGTGCTCGTCTGGGTTTCGAGCGCCTGTGCGTGTAGCACAAGCGTCTC
GTGTCTTGCGTCCCGATGGATGAGTGCCGCGTGTTGAAGGGACTGTTCTT
GTTTATTAGCGCTCTTGTGTACGTCGGCAGTACCGTGCTCGTCGCCCGGC
CGCACCGCCCGCCACCGGCAAAGGGATCGTGTAGGATGAAAGCGGGGGGG
GGGTGGGGGGTGACTGCCTTGCTGCTTGTTCACCACCGCTAAAAGTATGC
GCCAACTCGTTGCTGTTGAATACCACTCAATAAACCTCGCCCTGTGTACA
TACATGTCCGCCACCTAAATGCACAACGCCAAATAGCGCCGACCTAGAGC
ACACGAACAAGAAGGGCCTTACCCCTCTCCAGCTCGCTGTCCGCGCCGGG
CATCTCGGGGTGACGGAAGAGCTCTTGACTCGCGGGGCCCGGCCAAACGT
CAGGTCGAAGGCTGGCCGCTGCTTGCGCTGCTTGGCGAGCTCGATAGGTC
ATGGCTACCTCGTGGTGAGCGCGGCCTAATTTGGGGGACAGCCTTCGCTG
TGGTTGGTTGTTTTCGCGTTGTTTGTGGAGGAAGGATGGTAGTTTGTTTT
CTTTTTTTTCTCCCATCATTGACTTATTCGTCGTCTGCCCCACTGGCCCC
CTTCCTCCACTACGACTGGCTAGACGGCCCAACCAGGGTCACCGGTAGTG
TGGGTGCACGATTGTAGGTATATACCGCAGATGACACAAGATACCACCAC
CGCCCTGGACAGATTTTCAAAGCTCGGTTCCTCCCCAGCAAGAAGAGTGC
CGGTGCCGAACGGGGTAGGGTTGGAAAGATCTAGTCGAGGGCTGTCCGAA
CATGTGTCGTTTGGTGCTGACACCCTCTTCGTTACGGAGTAATGACGCTC
TGAAGGTCGGTCCGGGGGGGTGGGTGGTATCTTGTGTCACCGACGGTAGG
TCGGTCGGACTCCGGACACTGTAATTTTTTAGTTATGTAGCGTATTTGGA
TGCTTCGTCAGCTGGAGGCGACGTGTGTAAGTGCCGTCTCTCGCCTTGCG
ATACTCCGCGCGCGAGGGCTGGAGTTTAGACTGCGAAAAAGGGATTTTGA
TGCAACCGACGAGGTGCTGCCACTCCCTCCCACGCATGCGCTTCGACGAG
CCGACCTCACCACCCCGTGCCTCGCCGTTACCCTTGTAGGACTGGCTCTT
CGCGATGGGAGTGGCCGACGGCGAGGACGGAGGCTGCGCTTGCTCGGGCG
GCGCTAAAACCAGCGGAAGCGGCGGCGGCGGCGGCGGCGATGCCGCATCA
AACGGCCCACAAGCAACGCGGCAGCACTCGAGCGGCGCAACCGCCGGCAG
CAGCAACAAAGGGGTGCCGCCGCCATCGCGGGAGGCGTCGCCGCCCAGCG
CGGCGTCGGCGGCGCTCACGGAGTGGCTGGGCGGCCTCGGCCTGGGCGCC
TACGAGAGCACGCTGGTGTCGCAGGGCTTCGACACCCTTGAGGCGATGAG
CACCGCGACGGAGTCAGACCTCGAGGCGATGGGGTTCAAGAAGGGGCATC
TGAGGCTGCTGCTTGCCCGAGCCCCGTCCGCGGCCGCCAGCTTCGGGGGC
GGCACCGGGGGCGGCACCGGAGGCGGCGGCGATGGCCGCGACTCGCGAAT
CGTCACTTGTGCTGCTGCCGCAGAACCTGGGCCGGCGCCGGCGGGGCTGG
CGCGGACCGGCTCGATGCTGTCAACAGCAGCCACGGTAGGATGCAACCTC
GTCGGCAACGGGGTCGAGCCCGCGAAGAAAACGGTGCGAATTGCGACGCG
GCAGGCAGGGGGCAAGGGAGAAGACGAGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6451:4968..7048-

>mRNA_L-elsbetiae_contig6451.15123.1 ID=mRNA_L-elsbetiae_contig6451.15123.1|Name=mRNA_L-elsbetiae_contig6451.15123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1908bp|location=Sequence derived from alignment at L-elsbetiae_contig6451:4968..7048- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGATCGGGCGGGTGCTGGCGAGGGGTGAGATCGACGTGGAGTGGGT
CGGCAGGAGCAACGGCTGGACGGCCCTGATGGAGGCCGCTGAGCATGGGT
CGCTGGAGGCGGTTTGCTACCTGCTGGACTCGGGATGGCGATCGGGCGGG
TGCTGGCGAGGGGTGAGATCGACGTGGAGTGGGTCGGCAGGAGCAACGGC
TGGACGGCCCTGATGGAGGCCGCTGAGCATGGGTCGCTGGAGGCGGTTTG
CTACCTGCTGGACTCGGGCGCCGACCTAGAGCACACGAACAAGAAGGGCC
TTACCCCTCTCCAGCTCGCTGTCCGCGCCGGGCATCTCGGGGTGACGGAA
GAGCTCTTGACTCGCGGGGCCCGGCCAAACGTCAGGTCGAAGGCTGGCCG
CTGCTTGCGCTGCTTGGCGAGCTCGATAGGTCATGGCTACCTCGTGCGCC
GACCTAGAGCACACGAACAAGAAGGGCCTTACCCCTCTCCAGCTCGCTGT
CCGCGCCGGGCATCTCGGGGTGACGGAAGAGCTCTTGACTCGCGGGGCCC
GGCCAAACGTCAGGTCGAAGGCTGGCCGCTGCTTGCGCTGCTTGGCGAGC
TCGATAGGTCATGGCTACCTCGTGGACTGGCTCTTCGCGATGGGAGTGGC
CGACGGCGAGGACGGAGGCTGCGCTTGCTCGGGCGGCGCTAAAACCAGCG
GAAGCGGCGGCGGCGGCGGCGGCGATGCCGCATCAAACGGCCCACAAGCA
ACGCGGCAGCACTCGAGCGGCGCAACCGCCGGCAGCAGCAACAAAGGGGT
GCCGCCGCCATCGCGGGAGGCGTCGCCGCCCAGCGCGGCGTCGGCGGCGC
TCACGGAGTGGCTGGGCGGCCTCGGCCTGGGCGCCTACGAGAGCACGCTG
GTGTCGCAGGGCTTCGACACCCTTGAGGCGATGAGCACCGCGACGGAGTC
AGACCTCGAGGCGATGGGGTTCAAGAAGGGGCATCTGAGGCTGCTGCTTG
CCCGAGCCCCGTCCGCGGCCGCCAGCTTCGGGGGCGGCACCGGGGGCGGC
ACCGGAGGCGGCGGCGATGGCCGCGACTCGCGAATCGTCACTTGTGCTGC
TGCCGCAGAACCTGGGCCGGCGCCGGCGGGGCTGGCGCGGACCGGCTCGA
TGCTGTCAACAGCAGCCACGGTAGGATGCAACCTCGTCGGCAACGGGGTC
GAGCCCGCGAAGAAAACGGTGCGAATTGCGACGCGGCAGGCAGGGGGCAA
GGGAGAAGACGAGGAGGACTGGCTCTTCGCGATGGGAGTGGCCGACGGCG
AGGACGGAGGCTGCGCTTGCTCGGGCGGCGCTAAAACCAGCGGAAGCGGC
GGCGGCGGCGGCGGCGATGCCGCATCAAACGGCCCACAAGCAACGCGGCA
GCACTCGAGCGGCGCAACCGCCGGCAGCAGCAACAAAGGGGTGCCGCCGC
CATCGCGGGAGGCGTCGCCGCCCAGCGCGGCGTCGGCGGCGCTCACGGAG
TGGCTGGGCGGCCTCGGCCTGGGCGCCTACGAGAGCACGCTGGTGTCGCA
GGGCTTCGACACCCTTGAGGCGATGAGCACCGCGACGGAGTCAGACCTCG
AGGCGATGGGGTTCAAGAAGGGGCATCTGAGGCTGCTGCTTGCCCGAGCC
CCGTCCGCGGCCGCCAGCTTCGGGGGCGGCACCGGGGGCGGCACCGGAGG
CGGCGGCGATGGCCGCGACTCGCGAATCGTCACTTGTGCTGCTGCCGCAG
AACCTGGGCCGGCGCCGGCGGGGCTGGCGCGGACCGGCTCGATGCTGTCA
ACAGCAGCCACGGTAGGATGCAACCTCGTCGGCAACGGGGTCGAGCCCGC
GAAGAAAACGGTGCGAATTGCGACGCGGCAGGCAGGGGGCAAGGGAGAAG
ACGAGGAG
back to top