mRNA_L-elsbetiae_contig6438.15111.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6438.15111.1
Unique NamemRNA_L-elsbetiae_contig6438.15111.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6438.15111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6438contigL-elsbetiae_contig6438:10515..11049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size535
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6438.15111.1prot_L-elsbetiae_contig6438.15111.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6438 10528..10905 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.4733484-UTR-L-elsbetiae_contig6438:10514..105271622816710.4733484-UTR-L-elsbetiae_contig6438:10514..10527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6438 10515..10527 +
1691683757.1634758-UTR-L-elsbetiae_contig6438:10514..105271691683757.1634758-UTR-L-elsbetiae_contig6438:10514..10527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6438 10515..10527 +
1622816710.50011-UTR-L-elsbetiae_contig6438:10905..110491622816710.50011-UTR-L-elsbetiae_contig6438:10905..11049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6438 10906..11049 +
1691683757.186041-UTR-L-elsbetiae_contig6438:10905..110491691683757.186041-UTR-L-elsbetiae_contig6438:10905..11049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6438 10906..11049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.487329-CDS-L-elsbetiae_contig6438:10527..109051622816710.487329-CDS-L-elsbetiae_contig6438:10527..10905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 10528..10905 +
1691683757.1771305-CDS-L-elsbetiae_contig6438:10527..109051691683757.1771305-CDS-L-elsbetiae_contig6438:10527..10905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6438 10528..10905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6438.15111.1

>prot_L-elsbetiae_contig6438.15111.1 ID=prot_L-elsbetiae_contig6438.15111.1|Name=mRNA_L-elsbetiae_contig6438.15111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MRAGLGSRFFMKPIFFREDLNERSIRRKHPEIMGGRGGVIMVSHRNRARY
VNLLRIGFFLTTLHFTASRPLRAEYSDFSGPVRSPFDPLGMDFGSYLLSL
SLSLSLNPHPPLSLSLSLALCLQSS*
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mRNA from alignment at L-elsbetiae_contig6438:10515..11049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6438.15111.1 ID=mRNA_L-elsbetiae_contig6438.15111.1|Name=mRNA_L-elsbetiae_contig6438.15111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=535bp|location=Sequence derived from alignment at L-elsbetiae_contig6438:10515..11049+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCTCTAATAATGCGGGCGGGGTTAGGCTCCCGTTTTTTTATGAAGC
CGATTTTCTTTCGAGAAGACTTGAACGAACGGTCCATTCGCCGGAAACAC
CCTGAAATAATGGGGGGGAGGGGAGGGGTTATCATGGTCAGTCACCGCAA
CAGGGCACGCTACGTAAATCTGTTAAGAATTGGCTTTTTCCTGACAACGC
TGCATTTCACCGCCTCTCGGCCTCTGCGAGCGGAGTATTCGGACTTTTCG
GGCCCTGTGAGGTCACCATTTGACCCGTTGGGAATGGATTTCGGGTCCTA
CCTCCTGTCTCTCTCTCTCTCTCTCTCTCTCAACCCACATCCTCCTCTCT
CGCTCTCGCTCTCGCTCGCTCTCTGTCTGCAGAGCAGTTGATTTTTGTTT
GTGGATTTTGGAAAATTGTCCGAAACGCTGAAGGGGTCATTCCCGCGAGC
CGTTGCTCGTGCCACTGAAACCGCAGTAAAACAGCGCACTATGTTCCAGC
GTCCGCACAGCAGTGCCTCTCTCGGTGTCTACACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6438:10515..11049+

>mRNA_L-elsbetiae_contig6438.15111.1 ID=mRNA_L-elsbetiae_contig6438.15111.1|Name=mRNA_L-elsbetiae_contig6438.15111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig6438:10515..11049+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGCGGGGTTAGGCTCCCGTTTTTTTATGAAGCCGATTTTCTTTCG
AGAAGACTTGAACGAACGGTCCATTCGCCGGAAACACCCTGAAATAATGG
GGGGGAGGGGAGGGGTTATCATGGTCAGTCACCGCAACAGGGCACGCTAC
GTAAATCTGTTAAGAATTGGCTTTTTCCTGACAACGCTGCATTTCACCGC
CTCTCGGCCTCTGCGAGCGGAGTATTCGGACTTTTCGGGCCCTGTGAGGT
CACCATTTGACCCGTTGGGAATGGATTTCGGGTCCTACCTCCTGTCTCTC
TCTCTCTCTCTCTCTCTCAACCCACATCCTCCTCTCTCGCTCTCGCTCTC
GCTCGCTCTCTGTCTGCAGAGCAGTTGAATGCGGGCGGGGTTAGGCTCCC
GTTTTTTTATGAAGCCGATTTTCTTTCGAGAAGACTTGAACGAACGGTCC
ATTCGCCGGAAACACCCTGAAATAATGGGGGGGAGGGGAGGGGTTATCAT
GGTCAGTCACCGCAACAGGGCACGCTACGTAAATCTGTTAAGAATTGGCT
TTTTCCTGACAACGCTGCATTTCACCGCCTCTCGGCCTCTGCGAGCGGAG
TATTCGGACTTTTCGGGCCCTGTGAGGTCACCATTTGACCCGTTGGGAAT
GGATTTCGGGTCCTACCTCCTGTCTCTCTCTCTCTCTCTCTCTCTCAACC
CACATCCTCCTCTCTCGCTCTCGCTCTCGCTCGCTCTCTGTCTGCAGAGC
AGTTGA
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