mRNA_L-elsbetiae_contig643.15101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig643.15101.1
Unique NamemRNA_L-elsbetiae_contig643.15101.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig643.15101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig643contigL-elsbetiae_contig643:3698..4876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1179
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig643.15101.1prot_L-elsbetiae_contig643.15101.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig643 3932..4534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.010621-UTR-L-elsbetiae_contig643:3697..39311622816710.010621-UTR-L-elsbetiae_contig643:3697..3931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig643 3698..3931 +
1691683756.8616881-UTR-L-elsbetiae_contig643:3697..39311691683756.8616881-UTR-L-elsbetiae_contig643:3697..3931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig643 3698..3931 +
1622816710.0340831-UTR-L-elsbetiae_contig643:4534..48761622816710.0340831-UTR-L-elsbetiae_contig643:4534..4876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig643 4535..4876 +
1691683756.8910296-UTR-L-elsbetiae_contig643:4534..48761691683756.8910296-UTR-L-elsbetiae_contig643:4534..4876Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig643 4535..4876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816710.0237436-CDS-L-elsbetiae_contig643:3931..45341622816710.0237436-CDS-L-elsbetiae_contig643:3931..4534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 3932..4534 +
1691683756.8808768-CDS-L-elsbetiae_contig643:3931..45341691683756.8808768-CDS-L-elsbetiae_contig643:3931..4534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig643 3932..4534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig643.15101.1

>prot_L-elsbetiae_contig643.15101.1 ID=prot_L-elsbetiae_contig643.15101.1|Name=mRNA_L-elsbetiae_contig643.15101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MQQKSLSVVVHVDIAYPLPTCHRQWWQFSVSITFSTDANPHLTESRNKPW
WGRAQPGRRGPHMTLRYNVYRHPTPPAPHKNIKTRRIQTRGEGTGSPAVW
PVTPVPRSGCGASDVKHQQRKTKHKKTKQNCAVCVQKESPRSVPSLPFGG
QHPQEHKEEKKLLKLHANRERATRNNPPPRQHDHTKGGGRQPHPRKKRAT
*
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mRNA from alignment at L-elsbetiae_contig643:3698..4876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig643.15101.1 ID=mRNA_L-elsbetiae_contig643.15101.1|Name=mRNA_L-elsbetiae_contig643.15101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1179bp|location=Sequence derived from alignment at L-elsbetiae_contig643:3698..4876+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGTAAAAGTGTTTGTTACAGTAGTAGACGGTCGAGGAGGACATGGA
CAACAGAGTAGGACACGAACGTGCACAACAACCTGGGGTCAGTCAATATC
TTCGGCCAACCTGCTGCAACTTCTCGAAGGCCGATCGCGAACTTTTTCGA
TGCCTGCCTGCCTAAATATAACGGACAACAGGACAAAAGGCAGGCGGTAG
CAAACAAGCACCTAGCAATACACTGTAGCGGAAAATGCAACAAAAGAGTC
TCTCTGTTGTCGTACACGTAGATATAGCTTATCCGCTCCCAACCTGTCAC
AGGCAGTGGTGGCAGTTTTCGGTGTCCATTACGTTCTCAACAGACGCAAA
CCCGCATCTTACCGAATCGCGAAATAAACCTTGGTGGGGAAGAGCGCAGC
CAGGAAGGAGGGGCCCGCATATGACACTGCGATACAACGTATACAGGCAC
CCCACCCCGCCTGCTCCTCATAAAAACATAAAAACGAGAAGGATACAAAC
GAGGGGGGAAGGGACGGGGTCGCCAGCTGTGTGGCCAGTTACTCCCGTGC
CTCGGAGTGGGTGTGGAGCGAGTGATGTGAAACACCAACAACGAAAAACT
AAACATAAAAAAACAAAACAAAATTGTGCCGTGTGTGTCCAAAAAGAAAG
CCCGCGCAGCGTGCCTTCTCTTCCTTTCGGCGGACAACACCCCCAAGAAC
ATAAAGAAGAAAAAAAACTATTAAAACTGCACGCAAACAGAGAGCGAGCG
ACACGAAACAATCCGCCACCCCGACAACATGATCACACAAAAGGCGGTGG
GCGCCAGCCACACCCCAGAAAAAAACGCGCAACATGATCACACCAAAAAT
AAACGGGAAGGAAAAAAAAAAACCTCCACTCTCGAAAGAAGGCGGCGCCT
CGGCCCCTGCCTAGCCCGCCGGCCGACACGAGCGAAAGGACGCTGCGAAG
CGAGCTCACAGAACAACAGCACCAAAACCAAGCCAAGCCTGGGAGGAGGG
ACGCAACGACAGCAACGACAGCAACGACAGCAACAACACCTCACATCCTG
ACACGCCGCCCCGGTCCCCCCCTCCCTCCGCCGGACGACACAATAATTCG
ACCCTCTCACTCACACACCCAAATAGAAAACCCGAATCCGACCAACCGAA
CCACCCCAAAAAAACAAAATGGCCTCTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig643:3698..4876+

>mRNA_L-elsbetiae_contig643.15101.1 ID=mRNA_L-elsbetiae_contig643.15101.1|Name=mRNA_L-elsbetiae_contig643.15101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig643:3698..4876+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACAAAAGAGTCTCTCTGTTGTCGTACACGTAGATATAGCTTATCC
GCTCCCAACCTGTCACAGGCAGTGGTGGCAGTTTTCGGTGTCCATTACGT
TCTCAACAGACGCAAACCCGCATCTTACCGAATCGCGAAATAAACCTTGG
TGGGGAAGAGCGCAGCCAGGAAGGAGGGGCCCGCATATGACACTGCGATA
CAACGTATACAGGCACCCCACCCCGCCTGCTCCTCATAAAAACATAAAAA
CGAGAAGGATACAAACGAGGGGGGAAGGGACGGGGTCGCCAGCTGTGTGG
CCAGTTACTCCCGTGCCTCGGAGTGGGTGTGGAGCGAGTGATGTGAAACA
CCAACAACGAAAAACTAAACATAAAAAAACAAAACAAAATTGTGCCGTGT
GTGTCCAAAAAGAAAGCCCGCGCAGCGTGCCTTCTCTTCCTTTCGGCGGA
CAACACCCCCAAGAACATAAAGAAGAAAAAAAACTATTAAAACTGCACGC
AAACAGAGAGCGAGCGACACGAAACAATCCGCCACCCCGACAACATGATC
ACACAAAAGGCGGTGGGCGCCAGCCACACCCCAGAAAAAAACGCGCAACA
TGAATGCAACAAAAGAGTCTCTCTGTTGTCGTACACGTAGATATAGCTTA
TCCGCTCCCAACCTGTCACAGGCAGTGGTGGCAGTTTTCGGTGTCCATTA
CGTTCTCAACAGACGCAAACCCGCATCTTACCGAATCGCGAAATAAACCT
TGGTGGGGAAGAGCGCAGCCAGGAAGGAGGGGCCCGCATATGACACTGCG
ATACAACGTATACAGGCACCCCACCCCGCCTGCTCCTCATAAAAACATAA
AAACGAGAAGGATACAAACGAGGGGGGAAGGGACGGGGTCGCCAGCTGTG
TGGCCAGTTACTCCCGTGCCTCGGAGTGGGTGTGGAGCGAGTGATGTGAA
ACACCAACAACGAAAAACTAAACATAAAAAAACAAAACAAAATTGTGCCG
TGTGTGTCCAAAAAGAAAGCCCGCGCAGCGTGCCTTCTCTTCCTTTCGGC
GGACAACACCCCCAAGAACATAAAGAAGAAAAAAAACTATTAAAACTGCA
CGCAAACAGAGAGCGAGCGACACGAAACAATCCGCCACCCCGACAACATG
ATCACACAAAAGGCGGTGGGCGCCAGCCACACCCCAGAAAAAAACGCGCA
ACATGA
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