prot_L-elsbetiae_contig6411.15090.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6411.15090.1
Unique Nameprot_L-elsbetiae_contig6411.15090.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length50
Homology
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BLAST of mRNA_L-elsbetiae_contig6411.15090.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0 
Query:    1 MSFLDGLCDLPE-DIEISWRSFLHLEDVCSLTTLGAFASGLLALLTLAAVL 50
            M FLDGLCD P+ + + SW  F  L++VCSLTTLGA  +GL+ALL+  A+L
Sbjct:    1 MGFLDGLCDSPDGEAKFSWHDFWRLDNVCSLTTLGAVVAGLVALLSFVAML 51
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BLAST of mRNA_L-elsbetiae_contig6411.15090.1 vs. uniprot
Match: A0A6H5JJ25_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0 
Query:    1 MSFLDGLCDLPE-DIEISWRSFLHLEDVCSLTTLGAFASGLLALLTLAAVL 50
            M FLDGLCD P+ + E SW  F  L++VCSLTTLGA  +GL+AL++  A+L
Sbjct:    1 MGFLDGLCDSPDGEAEFSWHDFWLLDNVCSLTTLGAVVAGLVALMSFVAML 51
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6411.15090.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0B6_ECTSI1.950e-856.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ25_9PHAE2.670e-856.86ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..49
NoneNo IPR availableTMHMMTMhelixcoord: 27..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6411contigL-elsbetiae_contig6411:10338..10487 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6411.15090.1mRNA_L-elsbetiae_contig6411.15090.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6411 9580..10487 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6411.15090.1 ID=prot_L-elsbetiae_contig6411.15090.1|Name=mRNA_L-elsbetiae_contig6411.15090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
MSFLDGLCDLPEDIEISWRSFLHLEDVCSLTTLGAFASGLLALLTLAAVL
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