mRNA_L-elsbetiae_contig11736.1509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11736.1509.1
Unique NamemRNA_L-elsbetiae_contig11736.1509.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11736.1509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11736contigL-elsbetiae_contig11736:4486..4970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size485
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11736.1509.1prot_L-elsbetiae_contig11736.1509.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11736 4599..4901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.7858407-UTR-L-elsbetiae_contig11736:4485..45981622815376.7858407-UTR-L-elsbetiae_contig11736:4485..4598Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11736 4486..4598 +
1691682868.228604-UTR-L-elsbetiae_contig11736:4485..45981691682868.228604-UTR-L-elsbetiae_contig11736:4485..4598Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11736 4486..4598 +
1622815376.8192828-UTR-L-elsbetiae_contig11736:4901..49701622815376.8192828-UTR-L-elsbetiae_contig11736:4901..4970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11736 4902..4970 +
1691682868.2491283-UTR-L-elsbetiae_contig11736:4901..49701691682868.2491283-UTR-L-elsbetiae_contig11736:4901..4970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11736 4902..4970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.8084488-CDS-L-elsbetiae_contig11736:4598..49011622815376.8084488-CDS-L-elsbetiae_contig11736:4598..4901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11736 4599..4901 +
1691682868.2394848-CDS-L-elsbetiae_contig11736:4598..49011691682868.2394848-CDS-L-elsbetiae_contig11736:4598..4901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11736 4599..4901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11736.1509.1

>prot_L-elsbetiae_contig11736.1509.1 ID=prot_L-elsbetiae_contig11736.1509.1|Name=mRNA_L-elsbetiae_contig11736.1509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MLTVLFLPPRDKGRIIVFLVFWGGKGRVHPAPPSFLASHDVRISTKQALR
PALRCLDDPSDTRGAVNVRLPGPCCSQKDTCLPRDHVVWVRLREADRARR
*
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mRNA from alignment at L-elsbetiae_contig11736:4486..4970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11736.1509.1 ID=mRNA_L-elsbetiae_contig11736.1509.1|Name=mRNA_L-elsbetiae_contig11736.1509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=485bp|location=Sequence derived from alignment at L-elsbetiae_contig11736:4486..4970+ (Laminarionema elsbetiae ELsaHSoW15)
TATTTTTGTGCGATGCGTCAATATGATGAACGGATCGGTGCTTGCCTTTT
TGAATTTTCAGTGTTCTGGGTGTTTGTCGTATTTGCGGCACCGTACATAA
CCGACCGCTCGCAATGCTTACCGTACTGTTTCTTCCTCCCCGTGATAAAG
GCCGCATAATTGTCTTTCTCGTTTTTTGGGGGGGGAAAGGCAGGGTTCAC
CCTGCCCCGCCTAGTTTTCTTGCTTCGCATGACGTGCGCATCTCGACTAA
ACAAGCGCTTCGCCCTGCTCTTCGGTGTCTTGATGATCCGAGCGATACGC
GAGGCGCTGTCAACGTGCGGTTGCCAGGGCCGTGTTGTTCACAAAAGGAT
ACCTGCCTCCCACGTGATCATGTCGTGTGGGTGCGCTTAAGAGAAGCTGA
TCGAGCAAGACGGTAAAGTAATCGCTGCTGGCTCCACGTCATGGGGATCA
GAAAGTATGTTGCTGGTTGTGTTTCGAAAAGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11736:4486..4970+

>mRNA_L-elsbetiae_contig11736.1509.1 ID=mRNA_L-elsbetiae_contig11736.1509.1|Name=mRNA_L-elsbetiae_contig11736.1509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig11736:4486..4970+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTACCGTACTGTTTCTTCCTCCCCGTGATAAAGGCCGCATAATTGT
CTTTCTCGTTTTTTGGGGGGGGAAAGGCAGGGTTCACCCTGCCCCGCCTA
GTTTTCTTGCTTCGCATGACGTGCGCATCTCGACTAAACAAGCGCTTCGC
CCTGCTCTTCGGTGTCTTGATGATCCGAGCGATACGCGAGGCGCTGTCAA
CGTGCGGTTGCCAGGGCCGTGTTGTTCACAAAAGGATACCTGCCTCCCAC
GTGATCATGTCGTGTGGGTGCGCTTAAGAGAAGCTGATCGAGCAAGACGG
TAAATGCTTACCGTACTGTTTCTTCCTCCCCGTGATAAAGGCCGCATAAT
TGTCTTTCTCGTTTTTTGGGGGGGGAAAGGCAGGGTTCACCCTGCCCCGC
CTAGTTTTCTTGCTTCGCATGACGTGCGCATCTCGACTAAACAAGCGCTT
CGCCCTGCTCTTCGGTGTCTTGATGATCCGAGCGATACGCGAGGCGCTGT
CAACGTGCGGTTGCCAGGGCCGTGTTGTTCACAAAAGGATACCTGCCTCC
CACGTGATCATGTCGTGTGGGTGCGCTTAAGAGAAGCTGATCGAGCAAGA
CGGTAA
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