mRNA_L-elsbetiae_contig6411.15088.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6411.15088.1
Unique NamemRNA_L-elsbetiae_contig6411.15088.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6411.15088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6411contigL-elsbetiae_contig6411:1314..3673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size505
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.825266-CDS-L-elsbetiae_contig6411:1315..14381622816708.825266-CDS-L-elsbetiae_contig6411:1315..1438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 1316..1438 -
1691683756.0954227-CDS-L-elsbetiae_contig6411:1315..14381691683756.0954227-CDS-L-elsbetiae_contig6411:1315..1438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 1316..1438 -
1622816708.8418696-CDS-L-elsbetiae_contig6411:3295..36731622816708.8418696-CDS-L-elsbetiae_contig6411:3295..3673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 3296..3673 -
1691683756.105935-CDS-L-elsbetiae_contig6411:3295..36731691683756.105935-CDS-L-elsbetiae_contig6411:3295..3673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 3296..3673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6411.15088.1prot_L-elsbetiae_contig6411.15088.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6411 1316..3673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6411.15088.1

>prot_L-elsbetiae_contig6411.15088.1 ID=prot_L-elsbetiae_contig6411.15088.1|Name=mRNA_L-elsbetiae_contig6411.15088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
RRRPGTTRLPTPVPARRLPLPPVPHLPRRQRQPAAATPQAGSGEPYFRTR
SLLRRRRHHRLQTQRRRRRRWEEEEKEEAVERRGQAPGRAGAATGQVVSA
VRVKRKVSEPTMPMPVPVPMPLPMPQVFTAAAAGAAAAAQRQRRWRGWKL
HDSPGDGARDACRGGRA
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mRNA from alignment at L-elsbetiae_contig6411:1314..3673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6411.15088.1 ID=mRNA_L-elsbetiae_contig6411.15088.1|Name=mRNA_L-elsbetiae_contig6411.15088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2360bp|location=Sequence derived from alignment at L-elsbetiae_contig6411:1314..3673- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGCGGCCAGGAACAACCAGGCTACCAACGCCGGTGCCGGCGCGGAG
GTTGCCGCTGCCGCCGGTGCCGCACTTGCCGCGGCGGCAGCGGCAGCCGG
CAGCAGCCACCCCGCAGGCCGGGTCAGGCGAGCCATATTTCAGGACCCGC
AGCCTCTTACGGCGGCGCCGCCACCACCGGTTGCAGACGCAACGCCGCCG
GCGGCGACGGTGGGAGGAGGAGGAGAAGGAGGAGGCAGTAGAGCGCCGGG
GCCAAGCGCCGGGGAGAGCGGGAGCGGCGACAGGACAGGTTGTGTCGGCG
GTGCGAGTGAAGCGGAAAGTCTCGGAGCCAACGATGCCGATGCCGGTGCC
GGTGCCGATGCCGCTGCCGATGCCGCAGGTAAGAGTTTTACCCGGTGAAT
AGTCCGTCCGTGTGAGGCCATATTTACCCGTGCGCTCGAGTGCGTACGTT
TTGCTTTCGTCGCCCAGTGGATTAAGTGCGTTGTCTCTGCCCGCCGCCTG
GGCAGCAGGACCCTCTAAAACGTCCTTCTCTCGCCTTATTTTTCCACCCC
AGCAGGGGAAAAAAACAATCTGCCTCTTCCGGAACCCTCCCCCCCCACTA
AATACGCGACAATCGCCTTGCTATGTGGTGTGGTTATTGCGTTTCCGGTG
CCGGCAAGAGATATACCGCTACTGTTGTATCATGGGTTTGCGTGTTTCCC
TGTCGAGGCTTACCGCGTGCCAGTGGCGGGAACGGGGCCGCGAACAGAGT
CAACTTTGTTTTTTTTACTGCCGCACATCCTTTGGTTGGCCTTTGCAACC
TCTTTGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGGAACTTCACGTCTGTATAAGGTGCACCTTCTACCCCATGGGAGC
AAAAAAATATCCAAGAAGGAACACCATACCCGGCGGGGCTGCGGCGGGCC
CGGTGTGCCCTTGAACTCCTTGAGAGATGCCTCCCCAAAGCGGTTTCGTT
TGAAACGATTGATTTCCCTACTATCTCTGTCTCTGCGGCAGATCAGGGTA
CTAAATAGGAGTTGCCCTCCGACAATTGCAGATAGACCCAACTAAACTTC
CACCCATCATATAATTGTAATCACACTTTGATGTTAAAAACTCGAAATAC
CTATGTATATACATATATGATAATATACTTCTACATATTTCTATATACAA
CCACAAATAATGCTCCTTTCCACTTCACTACACAGAAGTATTTAGTTATT
GCAGATAGCTTCAACCCCTGTTCTATTAGAGGGTGAAGTGCGTTTTTTTT
CACCTGTTCGTCGTCTCGCCCAAGAGATCCCCCACCTGGTTTCTTGGCCC
GAACGAAGGGCAAGTTTGTCGAAACGCAGCAGGCACAGCAAAAACGAGTT
TTGTTTGAGTGTTGCACCATCGAATTGGGTTCAGATCGGTTCCGAAGGCG
TGTTTGCCGGACGGTACGCTGGTTTCTTGGCCCGAAGTCTGTGTGTGTGT
TTTCATTCCACTTATTCGGGCGTCTGGCCACCTTTTCGATGTGACATGCT
TTTCGGCGTGGTGTACTACACGTTTCGGTGCACGTTCTCTGTACAACGAG
ACGTACCCGCCGTGGTCACACAGGAAGGGGGTAAACAATACTTAGGTTTG
TTTTTTTGCCCCACCTTCCTCCTGCGGTACTTGCCTCGATTTTTATGGCG
AGAGAACGGTGGGTTCGGTATCCTGGCTATGTAGAGAAAAACCTTTTGTC
TATTTGGCGTGGCCATGTCGAAGAACATTCGTTTAAAACCAGCACACTCG
GTTGGACACGGCACAGTTTGAGAGAGGCGTGATGGGTCACTGCTGCTGTG
TGGTGTTGCTATTTCAGTTTTGGAAATAAATGTTTCCTACGTGTAGCGTT
GGTCATGTCAATGAAGATGCGTTCAACCAATGCACACGATTGGACATGGC
AGAATGTGAGAGAGGCGTGATGAGTGGCTGCTGCTTTGGCGTTCCTATAT
TTCGTTTGCATGGCCGATCACCGCACTCAGCCAGAAAAAAAAAAACATAT
GCATAAATAGACACTACATGTGTGCGCGCTCGTGGTCCCCAAATTAGACC
TACTGTATCGATCTATTGCTTGGCGAGTGGACAGAGTAGCGAAAAAATGC
CGCAGGCGTTCAAGAAACGAGAATAACCCTCGCTGCCCCGGTGCCCCCAC
GTCATGGTTGTTCCCGTCGCGGTTATGCTTTCTAGGTATTCACGGCGGCG
GCAGCAGGGGCGGCGGCGGCAGCGCAGCGGCAGCGGCGATGGCGGGGGTG
GAAGCTCCATGATTCGCCAGGTGATGGAGCGCGCGATGCTTGCCGCGGTG
GCCGCGCAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6411:1314..3673-

>mRNA_L-elsbetiae_contig6411.15088.1 ID=mRNA_L-elsbetiae_contig6411.15088.1|Name=mRNA_L-elsbetiae_contig6411.15088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig6411:1314..3673- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGCGGCCAGGAACAACCAGGCTACCAACGCCGGTGCCGGCGCGGAG
GTTGCCGCTGCCGCCGGTGCCGCACTTGCCGCGGCGGCAGCGGCAGCCGG
CAGCAGCCACCCCGCAGGCCGGGTCAGGCGAGCCATATTTCAGGACCCGC
AGCCTCTTACGGCGGCGCCGCCACCACCGGTTGCAGACGCAACGCCGCCG
GCGGCGACGGTGGGAGGAGGAGGAGAAGGAGGAGGCAGTAGAGCGCCGGG
GCCAAGCGCCGGGGAGAGCGGGAGCGGCGACAGGACAGGTTGTGTCGGCG
GTGCGAGTGAAGCGGAAAGTCTCGGAGCCAACGATGCCGATGCCGGTGCC
GGTGCCGATGCCGCTGCCGATGCCGCAGCGGCGGCGGCCAGGAACAACCA
GGCTACCAACGCCGGTGCCGGCGCGGAGGTTGCCGCTGCCGCCGGTGCCG
CACTTGCCGCGGCGGCAGCGGCAGCCGGCAGCAGCCACCCCGCAGGCCGG
GTCAGGCGAGCCATATTTCAGGACCCGCAGCCTCTTACGGCGGCGCCGCC
ACCACCGGTTGCAGACGCAACGCCGCCGGCGGCGACGGTGGGAGGAGGAG
GAGAAGGAGGAGGCAGTAGAGCGCCGGGGCCAAGCGCCGGGGAGAGCGGG
AGCGGCGACAGGACAGGTTGTGTCGGCGGTGCGAGTGAAGCGGAAAGTCT
CGGAGCCAACGATGCCGATGCCGGTGCCGGTGCCGATGCCGCTGCCGATG
CCGCAGGTATTCACGGCGGCGGCAGCAGGGGCGGCGGCGGCAGCGCAGCG
GCAGCGGCGATGGCGGGGGTGGAAGCTCCATGATTCGCCAGGTGATGGAG
CGCGCGATGCTTGCCGCGGTGGCCGCGCAGTATTCACGGCGGCGGCAGCA
GGGGCGGCGGCGGCAGCGCAGCGGCAGCGGCGATGGCGGGGGTGGAAGCT
CCATGATTCGCCAGGTGATGGAGCGCGCGATGCTTGCCGCGGTGGCCGCG
CA
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