mRNA_L-elsbetiae_contig641.15087.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig641.15087.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI) HSP 1 Score: 471 bits (1213), Expect = 1.140e-139 Identity = 391/917 (42.64%), Postives = 471/917 (51.36%), Query Frame = 2 Query: 290 QADATASRRRELRTTAGRADIARTVLRLKA--------NAAVATAAXXXXXXXXXXXXXXXXXXXXXXXXXAAGGTIT-------PA---------------------------AADRSAEKERKA-LADQGVQLFDLFDADGSGTIDREELHSLLEQLGIWVSAKTAREVFPRLDLDCSGDVRQEKLVAWLKDDGVASRRTPLSRMLQTRQSVQALGSSSRRLEHQVRASMLSRSRATARAEAWALLSGVPTTPXXXXXXXXXXXXXXXXGLAGPAGCHXXXXXXXXXXXXXXXXXXXXXXXXXXTRQRGSEEPTRDAGEATGAVGAAT------------GGRKRGRALAARAAERRRRTGEREKEVERELLAKRAEVEAEQRVRRNWRTQAGAAELRREVDRIRGAGEAMKLKLRTWDVDV----HTPAATLSPLTLRR--RQEEEKLRHLFRLFHASCDGCIDAEELGRLLSRMDVRLSEPEVAALLQKMDGDGSGDVDFVEFSEWWHTTGREWSTRPAALVRSAASSLAATVAPMAAARRDAXXALVSSXXXXXXXEVKAALRLEDENEAVCLLASSSSAXXXXXXXXXAAGS------ANVTGAVGDASSAAQGSLAAASIFGGTQGASG-----GDDGWGRPSP-NAERTAAARASKLARAEAEAYADVQATLRTDAGKRELARRTRAVRLEWQAAVKSAGRIAR----------GNRPRLAAGPGRDKPGERKRRRHAADASTTT------LVEFPFLQLLWGVHGSTTRGATGXXXXXXXXXXXXXXAGDGSAVEVEPSELKFLGASLRQTLVGQVTRRVPGGEQAAILGSTLALGRTVRASSASSVGGSRGPPLRAAREVRPSPAAAPHVANAAPAPATGGGEVLSMSGIFAGDSGDEIQSLKTLTR 2773 + DA A+RRR +T GRA+IAR V RLKA N A A AA G ++ PA A DR E+E+++ L Q QLF LFDADGSG IDREEL LL QLGIWV+AK A V WL+++G RR PLS+ML+ QSV+A GSS+RRLE QVRAS+++RSRA ARAE WA SGV P A PA X EE + E AV AAT GG++RGR LA RA RRRR E E++ EREL+ KRAE AE+R++R WRTQAGAAEL+RE DRIRGA EA+ L LR WD V T + + R ++ EEKLRH+FRLF SCDGCI AEELGRLLSRM+V +SE E+ LL +MD DGSGDVDF EFS WWH G + S RPAAL+RSAASSL A VAP+ AARRDA AL+S EVK LRLEDE+E LA ++ AAG V G SSA G + GT+G G G+ G GR NA+R AAAR+SKLARAEAEAYADVQA + T AGKRELARRTR +RLEW AA+++A IAR G+ G DK +R +R+ +T+T LVE P L+ LWG+H ST G T G++ VEPSELK++GASLR TLVG RR+ G Q +LGSTLA G R ++ G P +A E + NAA G+ LS+S IF + DEI+ LKTLTR Sbjct: 1594 ERDAAAARRRAFQTPTGRAEIARAVRRLKASRVIAATSNTVAAAAEAGGEAPQTNTAQGTHEERQTVVTQVAAAGAVSEGATWGAPANAGLSEDAGAKHTASVAKLSTSLNVAGAVDRVEEREKRSPLVGQAEQLFQLFDADGSGAIDREELAPLLGQLGIWVTAKMASXXXXXXXXXXXXXXXXXXXVTWLENEGADLRRAPLSKMLRAGQSVKAGGSSTRRLESQVRASIVARSRAAARAEVWAS-SGVTPVPA-----------------AAPAVVATTASTAAIDGPHEQAKQEDPNPQKQXXXXXXGEEEKKVIDEDAVAVEAATARKEPALAVKVTGGKERGRVLATRATGRRRRFEEEERDAERELVVKRAEDVAERRIKRQWRTQAGAAELKRERDRIRGAEEALNLTLRAWDAGVSFAKEEAGVTKTDASALRETKRAEEKLRHMFRLFDVSCDGCIHAEELGRLLSRMNVPMSEAEIVGLLHEMDRDGSGDVDFCEFSAWWHKDGLKRSNRPAALIRSAASSLVAKVAPITAARRDARRALISRARAEARAEVKNVLRLEDEDEEALRLAKIATGNTASAVAADAAGEYFVAFETRVGRECGGTSSAPPGKPL---LKDGTEGLGGEGSGVGEGGEGRGDRLNAKRLAAARSSKLARAEAEAYADVQAMILTQAGKRELARRTRDLRLEWSAAIRTATSIARESGSGELGTAGSADYSYEGASHDKEEQRTQRKEQRQHATSTDTSGIPLVEAPILRFLWGLHRSTAAGVT--------------LETAGASAGVEPSELKYVGASLRSTLVGGANRRI-WGSQVTLLGSTLAKGTAGRTANIVRTSADFGLPPQAEEEAT--------LPNAARTAGVESGDALSLSTIFDDHAHDEIRDLKTLTR 2466
BLAST of mRNA_L-elsbetiae_contig641.15087.1 vs. uniprot
Match: UPI001C71537F (troponin C-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI001C71537F) HSP 1 Score: 57.8 bits (138), Expect = 4.500e-6 Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 2 Query: 1409 ATLSPLTLRRRQEE---EKLRHLFRLFHASCDGCIDAEELGRLLSRMDVRLSEPEVAALLQKMDGDGSGDVDFVEFSE 1633 A L+ L EE ++L+ FR + C+G ID +L +L +D RLSE ++ A+++++D DGSG +DF EF E Sbjct: 69 AELAAKFLMEEDEEALKKELKEAFRFYDKECNGYIDNSKLREILQELDPRLSEDDLDAIIEEVDSDGSGTLDFDEFME 146
BLAST of mRNA_L-elsbetiae_contig641.15087.1 vs. uniprot
Match: A0A818VH62_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A818VH62_9BILA) HSP 1 Score: 55.1 bits (131), Expect = 3.560e-5 Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 2 Query: 1439 RQEEEKLRHLFRLFHASCDGCIDAEELGRLLSRMDVRLSEPEVAALLQKMDGDGSGDVDFVEF 1627 R +E++LR F LF + G I +EL ++L + ++ +E E+ AL+ +MD DGSG +DF EF Sbjct: 6 RNQEQQLRDAFDLFDRNRSGDISKKELKKVLKTLGIKANEKELQALINQMDADGSGKIDFNEF 68 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig641.15087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig641.15087.1 >prot_L-elsbetiae_contig641.15087.1 ID=prot_L-elsbetiae_contig641.15087.1|Name=mRNA_L-elsbetiae_contig641.15087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=844bp MKHKALPAPPPPYPPQADATASRRRELRTTAGRADIARTVLRLKANAAVAback to top mRNA from alignment at L-elsbetiae_contig641:26288..35045+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig641.15087.1 ID=mRNA_L-elsbetiae_contig641.15087.1|Name=mRNA_L-elsbetiae_contig641.15087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8758bp|location=Sequence derived from alignment at L-elsbetiae_contig641:26288..35045+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig641:26288..35045+ >mRNA_L-elsbetiae_contig641.15087.1 ID=mRNA_L-elsbetiae_contig641.15087.1|Name=mRNA_L-elsbetiae_contig641.15087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5064bp|location=Sequence derived from alignment at L-elsbetiae_contig641:26288..35045+ (Laminarionema elsbetiae ELsaHSoW15)back to top |