mRNA_L-elsbetiae_contig6407.15084.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6407.15084.1
Unique NamemRNA_L-elsbetiae_contig6407.15084.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6407.15084.1 vs. uniprot
Match: A0A6H5JAH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH0_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.110e-12
Identity = 69/144 (47.92%), Postives = 86/144 (59.72%), Query Frame = 2 
Query: 1328 LSREPSLSSSGSSSTEELLAEADSLIAD-------SEKASARRTPGRSRRARAT--------AGRSRARFDSTGEPDLTTTSGKKTPSPSRPSDNHRRKRARVYREVSGAEVDALVRLTNRALQRDPAALIEIAEDPSIQKSGE 1714
            +SR  SL S   SSTE++LAEAD LIAD       S +A    T  R+ + RAT        A R +++    G P L  T  + T S SR SD    KR RVY EVSG EVDALV LT+RAL+RDP+AL EIA+D S+Q+ G+
Sbjct:  339 MSRGQSLLSE--SSTEDILAEADHLIADAANNTFNSIRAMTTPTKPRAGKLRATSKATGPIQAARRKSKDSPRGTPSLKLTLSRMT-SASRSSDTRSPKRPRVYPEVSGEEVDALVSLTHRALERDPSALSEIAKDASLQQGGD 479
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BLAST of mRNA_L-elsbetiae_contig6407.15084.1 vs. uniprot
Match: D8LIF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF2_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.920e-10
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 2 
Query: 1550 SRPSDNHRRKRARVYREVSGAEVDALVRLTNRALQRDPAALIEIAEDPSIQKSGE 1714
            SR SD    KR RVY EVSG EVDALV LT RAL+RDP+AL EIA+D S+Q+ G+
Sbjct:    5 SRSSDTRSPKRPRVYPEVSGEEVDALVSLTQRALERDPSALSEIAKDASLQQGGD 59
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6407.15084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAH0_9PHAE7.110e-1247.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIF2_ECTSI2.920e-1065.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6407contigL-elsbetiae_contig6407:5593..9447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003880.1
Exons3
Model size2319
Cds size1383
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6407.15084.1prot_L-elsbetiae_contig6407.15084.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6407 5951..8869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.8195755-UTR-L-elsbetiae_contig6407:5592..59501622816707.8195755-UTR-L-elsbetiae_contig6407:5592..5950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6407 5593..5950 +
1691683755.4068065-UTR-L-elsbetiae_contig6407:5592..59501691683755.4068065-UTR-L-elsbetiae_contig6407:5592..5950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6407 5593..5950 +
1622816707.880741-UTR-L-elsbetiae_contig6407:8869..94471622816707.880741-UTR-L-elsbetiae_contig6407:8869..9447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6407 8870..9447 +
1691683755.4487827-UTR-L-elsbetiae_contig6407:8869..94471691683755.4487827-UTR-L-elsbetiae_contig6407:8869..9447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6407 8870..9447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.8331947-CDS-L-elsbetiae_contig6407:5950..61091622816707.8331947-CDS-L-elsbetiae_contig6407:5950..6109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6407 5951..6109 +
1691683755.4191709-CDS-L-elsbetiae_contig6407:5950..61091691683755.4191709-CDS-L-elsbetiae_contig6407:5950..6109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6407 5951..6109 +
1622816707.847307-CDS-L-elsbetiae_contig6407:6505..66091622816707.847307-CDS-L-elsbetiae_contig6407:6505..6609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6407 6506..6609 +
1691683755.4286563-CDS-L-elsbetiae_contig6407:6505..66091691683755.4286563-CDS-L-elsbetiae_contig6407:6505..6609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6407 6506..6609 +
1622816707.863654-CDS-L-elsbetiae_contig6407:7749..88691622816707.863654-CDS-L-elsbetiae_contig6407:7749..8869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6407 7750..8869 +
1691683755.4381084-CDS-L-elsbetiae_contig6407:7749..88691691683755.4381084-CDS-L-elsbetiae_contig6407:7749..8869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6407 7750..8869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6407.15084.1

>prot_L-elsbetiae_contig6407.15084.1 ID=prot_L-elsbetiae_contig6407.15084.1|Name=mRNA_L-elsbetiae_contig6407.15084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=461bp
MPCMMGQEGAFVERSYSLQQFIRWGLGSYPSSAAAATTKANTVEQGGWNK
AGRFWANMRRGSLGCITTTWEEEQLRVASGDCGAVQGRLKAGPTSSCDED
PTMGATNSAATLFLFRGRTAATLLVGALVAAAIYSVYSSRCKPSRPRPRP
QRDDDNDGGRVENGEETGVGDKAGADEDKTPERTGARGGGGGGGGGDGDV
GGGGNGGEEYSGHEAGDRAEGGEGECPPTSSGSVDPARNSSPSPENDRER
AGSVEDAEDRQGENGVPASKGGDNSQGARGVSAAGAGGDQRGDASARIGG
KEDQKRDEARAGGSPNRDQNGSALSREPSLSSSGSSSTEELLAEADSLIA
DSEKASARRTPGRSRRARATAGRSRARFDSTGEPDLTTTSGKKTPSPSRP
SDNHRRKRARVYREVSGAEVDALVRLTNRALQRDPAALIEIAEDPSIQKS
GEDELSPLKY*
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mRNA from alignment at L-elsbetiae_contig6407:5593..9447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6407.15084.1 ID=mRNA_L-elsbetiae_contig6407.15084.1|Name=mRNA_L-elsbetiae_contig6407.15084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3855bp|location=Sequence derived from alignment at L-elsbetiae_contig6407:5593..9447+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGTGACCTGGTGACCCGTCTGAGCAGTTGGTCTGCAGTGGAGGCCACT
GCCCCCACCCAACTGCCCCTGCAGTTGTCTGTTTTCAGGTTTTCAGCACA
AACGCTTGCGGGAAGCACAACCTTGCACTGTTTCGGCGTGCCTGTGTACC
TAAGAAGCTGCCCGACGCACCAGCGTGCGCTGTTCCGTGGGAGCTCGATC
GCGCCCTCGGAAGGCACGAACGACCACCCTCTTTACCGGTGGGACACGAC
GACTCTCGTGTTCAGGGCTTGCGTATAGCAGGGCTCTCTATATTTTGCTA
CGTTTCGCGGCATAGCAGCGCCACCAGAGACCCGGGAGGCTCCGGTTGAA
TCACTTGGATGCCATGCATGATGGGGCAAGAAGGAGCATTTGTGGAGAGG
TCTTACTCCCTACAGCAGTTCATCAGATGGGGCTTGGGGTCTTACCCCTC
TTCCGCAGCAGCTGCTACAACCAAAGCGAACACTGTGGAACAAGGAGGGT
GGAACAAGGCCGGCAGGGTGAGGTGGTGTGGTGAATGTCATAGTAGTCAA
TGCGTAAATGCATTATTAGTCTTCTTGTATCTATGTATGTGCCTGATAGA
TAGGTAATACGTGTCGTCTGACCTTACTTGTTGAAACCAGCTCATCAGCA
GCAACGAACACAGCAAGGTTCGAACCCTTTTAGAAAATCGAACTTGGATC
CACAGATCGTGTGTTTGTTTCGCAACGAAAACGTCGTCGGGTGTTCTGTG
TGCGTCCGTACCCCACCTTTTCATCTATCACGACGCACCACGGTCATAAG
TCGATTCCGTGCGTCCCTTTTCCACGACAACCCAAGTTGGACAACAGCTT
CTTTTTCTCTCTGTCTGCGCATGCGCGGCGCACCCACTCGGCGCTTGAAA
AAACAAACAACAGTTCTGGGCAAACATGAGACGGGGAAGCTTGGGCTGCA
TAACAACGACGTGGGAGGAGGAGCAGCTGCGGGTGGCTTCGGGCGACTGC
GGCGCGGTTCAAGGCAGGTGTGTGCGTAAATGAAGGGTGTGTGTGCTCAT
TCAAAGTTACCATGTCTGCTGTTTGTTTGTTGGCTCTGGTTTTTAGTGTT
CAACTTCTTGGAGTTGATCGACCCCCCTTTGGGAATTCGTTACACACTTC
AACCTGAGCCACGTGCCCACCTGCCTGCCTGCCGTTATACATATATGGCA
GCAATTCCGCGAGCAGAAAAGTGCAGTCACCCAGGGCTGCTTGTTGTGAA
CTCGCACTGCAATTATATGTAGCATATGTTTCGTGACGGACTGGTTTAAA
ACGAGCCGGCTACTTCGTGAAACGATTGCGTAAACGCACACTCAAGACCC
TCCGACATTCGTTCCGAAAACAAACAAACTTGTCCAGATGACGTTGGACG
AACACGCTGCTGCTCTACAAATGGTAGACCTTGGCCAGATAAAAATGACG
AAAGAGATGTCAAGTCGCCCGAGAGTATGTAGTAGGTAAAGCGCAAGGGC
AGGACAACGCCTACCCACTACCTACATACTCCTATATATTTCTATATATT
TATTTAGTCTAGATCTAGGCAGGTTTTTCAATTCCGTCGTACATTAAACA
GTGTCATGTTGTCAGTCTTCAGTGATTCTAAACACAGCAACAGGTAGACG
TAGATTGTGCGGAACATTGCCAATGGCGTGCACTGCAGGCGGTGGGCGCT
TGTACACGCTGTTTTTTTTTGTGAACTGCACAGCATTGGTGGTATGCAGT
GCCGCAGCTTTGCGGGTTCTCTCTCGGGCCGTCTAGGTATCTAGACATCG
TGCTGCTACATAGCGATAAAAAACCGCCTCTACATGGCCATTGAGACTTG
CAGCAAGCAAGCTTTTAGCAGCGCACCGCGGTCCCGGCCGTGTTTGTTAC
GGCCAGCTCTCGGACTAAGAAACTCTGGTAGAGGTAAGCATCTTCTGGCG
TTTTCACTCAGGGTGATCTCTGGCTGTATGCCTTGCTATTTATTTATATT
TCGCCCCCCTTTCGCTCCCTTTTCCCCCTATTTTTTCATCGCATAAATAA
ATACCACGACCCATTGTCTGGTTCTCCTCTACTTACTTATTTTATTGGTT
TGTGCGTCTGCGCGACGCTCTGATGTTCGGGGCTACTACGTTCATGTGGT
GCTGGAGGTTAAAGGCGGGCCCAACCTCCTCCTGCGACGAGGATCCCACG
ATGGGCGCCACGAACTCCGCGGCCACGTTGTTTTTGTTTCGGGGGCGAAC
CGCAGCGACTCTGCTTGTTGGAGCCCTAGTTGCCGCGGCGATATACTCTG
TCTACAGCAGTCGCTGCAAGCCGAGCCGTCCTCGCCCTCGGCCGCAGCGG
GATGACGATAACGACGGCGGTCGGGTCGAGAACGGCGAGGAAACCGGCGT
TGGGGACAAGGCGGGTGCAGACGAGGACAAGACTCCTGAACGCACTGGAG
CTAGAGGTGGCGGCGGCGGCGGCGGCGGCGGCGATGGTGATGTCGGCGGT
GGTGGTAATGGTGGAGAAGAATACAGCGGACACGAAGCAGGTGATCGAGC
GGAAGGCGGCGAAGGCGAGTGCCCTCCAACGTCCTCAGGGTCTGTTGATC
CAGCGCGGAACTCTTCCCCGAGTCCCGAGAACGATCGAGAGAGGGCCGGC
AGCGTTGAAGATGCTGAGGACAGGCAGGGTGAAAATGGCGTACCTGCAAG
CAAGGGTGGCGACAACAGCCAGGGTGCTAGGGGCGTGTCTGCTGCGGGTG
CTGGCGGTGACCAGCGTGGCGACGCGTCGGCCAGGATTGGCGGGAAGGAG
GACCAAAAGAGAGACGAAGCACGTGCCGGGGGCAGTCCAAACAGGGATCA
AAACGGCTCCGCGTTGAGCAGAGAACCGTCGTTGTCGTCGTCAGGAAGCA
GCAGCACCGAAGAGCTCCTCGCAGAGGCCGACAGCCTTATTGCGGACTCC
GAGAAAGCCAGCGCTCGACGAACTCCCGGCAGATCGCGCCGCGCTCGCGC
TACGGCCGGCAGGAGCCGGGCGAGGTTTGACTCTACTGGCGAGCCAGATC
TGACCACCACTAGCGGAAAGAAGACCCCCAGCCCAAGCAGACCGAGCGAC
AATCACAGGCGGAAGCGGGCGCGCGTTTATCGGGAGGTGTCGGGCGCAGA
GGTAGACGCGCTCGTGAGGCTGACGAACAGGGCGCTCCAGAGGGACCCCG
CGGCTCTGATCGAGATCGCGGAGGATCCATCCATTCAAAAGAGCGGCGAG
GATGAGCTGTCTCCGTTGAAGTACTAAATGTAGCGGGGGGAGAGCCCTCG
GTCGTTTTGGGGTGATGTGGGAGAGCGGCAACAAAAATTGCCGGCTTTTT
GGCGAGCTCTATATGTATCTACTATTTGATCGAATGGGCCTGATTCCGGG
CAGTAGCGGTACAAACAGGTCTTGTTGTATGAAACATGTAACCTGCGAAA
TGGTCCCAACAACAGTTCAGATATGGTCTCATACTTTCGAACATTTTTGG
TTCAGGGGTTGGTTGTTGGTGATCTCCAAAAGTGCTTGTTGTTCCGGCAC
GAATCTATGCACTGCTGTCTGTCTTTATGTATATAGCGCTTGGTTTCGGT
GGGCGCAGGTGGAGCCACGAACGTCGTGGGGCAGCGGTTTCCCCGTCGCG
TTGTCGGAACATTGAAAACTTTAATAAATTTGGCGTTTTACACGTGGCAT
GCATGGTTTGTTTGTTTGTGTGCGACAGATCACTTCGGACCATCGAAAAC
CTTGTTCGTTCGTGTACATAAGGTACATGTGGATGGGGGCGTGCCTCCGG
AGCGGCCGCAGTTGCCGTTGCGCGTGCGCCGCACAAGATGGCCGCAATCG
CCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6407:5593..9447+

>mRNA_L-elsbetiae_contig6407.15084.1 ID=mRNA_L-elsbetiae_contig6407.15084.1|Name=mRNA_L-elsbetiae_contig6407.15084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2766bp|location=Sequence derived from alignment at L-elsbetiae_contig6407:5593..9447+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATGCATGATGGGGCAAGAAGGAGCATTTGTGGAGAGGTCTTACTC
CCTACAGCAGTTCATCAGATGGGGCTTGGGGTCTTACCCCTCTTCCGCAG
CAGCTGCTACAACCAAAGCGAACACTGTGGAACAAGGAGGGTGGAACAAG
GCCGGCAGGATGCCATGCATGATGGGGCAAGAAGGAGCATTTGTGGAGAG
GTCTTACTCCCTACAGCAGTTCATCAGATGGGGCTTGGGGTCTTACCCCT
CTTCCGCAGCAGCTGCTACAACCAAAGCGAACACTGTGGAACAAGGAGGG
TGGAACAAGGCCGGCAGGTTCTGGGCAAACATGAGACGGGGAAGCTTGGG
CTGCATAACAACGACGTGGGAGGAGGAGCAGCTGCGGGTGGCTTCGGGCG
ACTGCGGCGCGGTTCAAGGCAGTTCTGGGCAAACATGAGACGGGGAAGCT
TGGGCTGCATAACAACGACGTGGGAGGAGGAGCAGCTGCGGGTGGCTTCG
GGCGACTGCGGCGCGGTTCAAGGCAGGTTAAAGGCGGGCCCAACCTCCTC
CTGCGACGAGGATCCCACGATGGGCGCCACGAACTCCGCGGCCACGTTGT
TTTTGTTTCGGGGGCGAACCGCAGCGACTCTGCTTGTTGGAGCCCTAGTT
GCCGCGGCGATATACTCTGTCTACAGCAGTCGCTGCAAGCCGAGCCGTCC
TCGCCCTCGGCCGCAGCGGGATGACGATAACGACGGCGGTCGGGTCGAGA
ACGGCGAGGAAACCGGCGTTGGGGACAAGGCGGGTGCAGACGAGGACAAG
ACTCCTGAACGCACTGGAGCTAGAGGTGGCGGCGGCGGCGGCGGCGGCGG
CGATGGTGATGTCGGCGGTGGTGGTAATGGTGGAGAAGAATACAGCGGAC
ACGAAGCAGGTGATCGAGCGGAAGGCGGCGAAGGCGAGTGCCCTCCAACG
TCCTCAGGGTCTGTTGATCCAGCGCGGAACTCTTCCCCGAGTCCCGAGAA
CGATCGAGAGAGGGCCGGCAGCGTTGAAGATGCTGAGGACAGGCAGGGTG
AAAATGGCGTACCTGCAAGCAAGGGTGGCGACAACAGCCAGGGTGCTAGG
GGCGTGTCTGCTGCGGGTGCTGGCGGTGACCAGCGTGGCGACGCGTCGGC
CAGGATTGGCGGGAAGGAGGACCAAAAGAGAGACGAAGCACGTGCCGGGG
GCAGTCCAAACAGGGATCAAAACGGCTCCGCGTTGAGCAGAGAACCGTCG
TTGTCGTCGTCAGGAAGCAGCAGCACCGAAGAGCTCCTCGCAGAGGCCGA
CAGCCTTATTGCGGACTCCGAGAAAGCCAGCGCTCGACGAACTCCCGGCA
GATCGCGCCGCGCTCGCGCTACGGCCGGCAGGAGCCGGGCGAGGTTTGAC
TCTACTGGCGAGCCAGATCTGACCACCACTAGCGGAAAGAAGACCCCCAG
CCCAAGCAGACCGAGCGACAATCACAGGCGGAAGCGGGCGCGCGTTTATC
GGGAGGTGTCGGGCGCAGAGGTAGACGCGCTCGTGAGGCTGACGAACAGG
GCGCTCCAGAGGGACCCCGCGGCTCTGATCGAGATCGCGGAGGATCCATC
CATTCAAAAGAGCGGCGAGGATGAGCTGTCTCCGTTGAAGTACTAAGTTA
AAGGCGGGCCCAACCTCCTCCTGCGACGAGGATCCCACGATGGGCGCCAC
GAACTCCGCGGCCACGTTGTTTTTGTTTCGGGGGCGAACCGCAGCGACTC
TGCTTGTTGGAGCCCTAGTTGCCGCGGCGATATACTCTGTCTACAGCAGT
CGCTGCAAGCCGAGCCGTCCTCGCCCTCGGCCGCAGCGGGATGACGATAA
CGACGGCGGTCGGGTCGAGAACGGCGAGGAAACCGGCGTTGGGGACAAGG
CGGGTGCAGACGAGGACAAGACTCCTGAACGCACTGGAGCTAGAGGTGGC
GGCGGCGGCGGCGGCGGCGGCGATGGTGATGTCGGCGGTGGTGGTAATGG
TGGAGAAGAATACAGCGGACACGAAGCAGGTGATCGAGCGGAAGGCGGCG
AAGGCGAGTGCCCTCCAACGTCCTCAGGGTCTGTTGATCCAGCGCGGAAC
TCTTCCCCGAGTCCCGAGAACGATCGAGAGAGGGCCGGCAGCGTTGAAGA
TGCTGAGGACAGGCAGGGTGAAAATGGCGTACCTGCAAGCAAGGGTGGCG
ACAACAGCCAGGGTGCTAGGGGCGTGTCTGCTGCGGGTGCTGGCGGTGAC
CAGCGTGGCGACGCGTCGGCCAGGATTGGCGGGAAGGAGGACCAAAAGAG
AGACGAAGCACGTGCCGGGGGCAGTCCAAACAGGGATCAAAACGGCTCCG
CGTTGAGCAGAGAACCGTCGTTGTCGTCGTCAGGAAGCAGCAGCACCGAA
GAGCTCCTCGCAGAGGCCGACAGCCTTATTGCGGACTCCGAGAAAGCCAG
CGCTCGACGAACTCCCGGCAGATCGCGCCGCGCTCGCGCTACGGCCGGCA
GGAGCCGGGCGAGGTTTGACTCTACTGGCGAGCCAGATCTGACCACCACT
AGCGGAAAGAAGACCCCCAGCCCAAGCAGACCGAGCGACAATCACAGGCG
GAAGCGGGCGCGCGTTTATCGGGAGGTGTCGGGCGCAGAGGTAGACGCGC
TCGTGAGGCTGACGAACAGGGCGCTCCAGAGGGACCCCGCGGCTCTGATC
GAGATCGCGGAGGATCCATCCATTCAAAAGAGCGGCGAGGATGAGCTGTC
TCCGTTGAAGTACTAA
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