mRNA_L-elsbetiae_contig6403.15080.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6403.15080.1
Unique NamemRNA_L-elsbetiae_contig6403.15080.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6403.15080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6403contigL-elsbetiae_contig6403:845..1188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size346
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816707.4939616-CDS-L-elsbetiae_contig6403:844..11861622816707.4939616-CDS-L-elsbetiae_contig6403:844..1186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6403 845..1186 +
1691683755.2010403-CDS-L-elsbetiae_contig6403:844..11861691683755.2010403-CDS-L-elsbetiae_contig6403:844..1186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6403 845..1186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6403.15080.1prot_L-elsbetiae_contig6403.15080.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6403 845..1186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6403.15080.1

>prot_L-elsbetiae_contig6403.15080.1 ID=prot_L-elsbetiae_contig6403.15080.1|Name=mRNA_L-elsbetiae_contig6403.15080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
PRRSPTRAARCVVLQRVIGEVRVGRGCSGGKRLWLKKVSQTTDGLGVWWP
LLVLRFMSRFVKSMRLLRGGTSLFARVSSTDTSDNEEAYMGLCVSLTVRS
TAGKVKAGSFGSTE
back to top

mRNA from alignment at L-elsbetiae_contig6403:845..1188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6403.15080.1 ID=mRNA_L-elsbetiae_contig6403.15080.1|Name=mRNA_L-elsbetiae_contig6403.15080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=344bp|location=Sequence derived from alignment at L-elsbetiae_contig6403:845..1188+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAGGCGCTCACCCACACGAGCCGCGCGTTGCGTGGTGCTGCAGCGGGT
CATTGGAGAAGTAAGAGTAGGAAGGGGGTGCAGCGGTGGTAAGAGACTGT
GGCTTAAGAAGGTGTCTCAAACTACTGATGGTCTGGGTGTATGGTGGCCT
CTGCTTGTCTTGCGCTTTATGTCGCGTTTCGTGAAAAGCATGCGCCTTCT
TCGTGGTGGCACATCGCTGTTTGCGCGCGTTTCAAGCACTGACACAAGTG
ACAACGAGGAAGCTTATATGGGATTGTGTGTTTCCTTAACTGTACGGTCC
ACCGCGGGAAAAGTAAAGGCAGGTTCATTTGGATCAACTGAAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6403:845..1188+

>mRNA_L-elsbetiae_contig6403.15080.1 ID=mRNA_L-elsbetiae_contig6403.15080.1|Name=mRNA_L-elsbetiae_contig6403.15080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig6403:845..1188+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAGGCGCTCACCCACACGAGCCGCGCGTTGCGTGGTGCTGCAGCGGGT
CATTGGAGAAGTAAGAGTAGGAAGGGGGTGCAGCGGTGGTAAGAGACTGT
GGCTTAAGAAGGTGTCTCAAACTACTGATGGTCTGGGTGTATGGTGGCCT
CTGCTTGTCTTGCGCTTTATGTCGCGTTTCGTGAAAAGCATGCGCCTTCT
TCGTGGTGGCACATCGCTGTTTGCGCGCGTTTCAAGCACTGACACAAGTG
ACAACGAGGAAGCTTATATGGGATTGTGTGTTTCCTTAACTGTACGGTCC
ACCGCGGGAAAAGTAAAGGCAGGTTCATTTGGATCAACTGAACCGAGGCG
CTCACCCACACGAGCCGCGCGTTGCGTGGTGCTGCAGCGGGTCATTGGAG
AAGTAAGAGTAGGAAGGGGGTGCAGCGGTGGTAAGAGACTGTGGCTTAAG
AAGGTGTCTCAAACTACTGATGGTCTGGGTGTATGGTGGCCTCTGCTTGT
CTTGCGCTTTATGTCGCGTTTCGTGAAAAGCATGCGCCTTCTTCGTGGTG
GCACATCGCTGTTTGCGCGCGTTTCAAGCACTGACACAAGTGACAACGAG
GAAGCTTATATGGGATTGTGTGTTTCCTTAACTGTACGGTCCACCGCGGG
AAAAGTAAAGGCAGGTTCATTTGGATCAACTGAA
back to top