mRNA_L-elsbetiae_contig1173.1506.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1173.1506.1 vs. uniprot
Match: D8LKG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG5_ECTSI) HSP 1 Score: 340 bits (871), Expect = 1.870e-96 Identity = 199/360 (55.28%), Postives = 234/360 (65.00%), Query Frame = 1
Query: 1 LHAKVSALANQVKLAKAWQDRHPACFLPVAWAFCAAVIAKW----SCRGGEGEASTEGGAAGAAGRGRVGG----RIYEGTSDDSMRPRQPSTFSLLALLAAFLDKDSTARGVSKGTFGGGANPTFAKQNPNIGEVFLRFSAFVQQLGVASSRETVA--PTVLSLLDNGEVEEIWAATTC----PSGKTLPTGCEKAAARP------------ILVQVGGERLEDLAEASTVSQLRRTCATIERSMIPDAARGLPVWEQDIRWSLLGFALERVGSDGKEEAGGEQGMQL---PSYLDWMEVELQMCINDYIDAMPGVYGFNVTGRSPLTPTMTTELDSKLASDVMQARTANVVFAAALRV 993
L KV+AL +VK AK W DRHPACFLPVAWA CAAV AKW GG G GGA R R GG R+ E + + RQPS FS+LALLAAFLDKDS ARGVSK TFG G +PT AK NPNIGE+FLRF ++V+QLGV R A P ++LLD+GE+E W+A P GK A P I VQVGG+ LEDL +A+ VS LRR CA IE+S+ PD ARGLPVW QDIRWSLLGFALE+ + EE+ G G + PSYLDWME+ LQMC+ND ID MPG+YGFNVTGR+PL P LD + A+DV+QARTA+VVF+AAL+V
Sbjct: 217 LDDKVAALVTKVKRAKCWHDRHPACFLPVAWAVCAAVAAKWPTDGDLGGGAGVMWENGGA-----RNRRGGVSAARVLERAR--ARKARQPSPFSILALLAAFLDKDSKARGVSKATFGAGPSPTCAKHNPNIGEIFLRFCSYVRQLGVKPGRRKSAGPPATMNLLDSGELEMWWSAAAAVAATPKGKKPQRSDRGAETEPEEIAMGQDQADLIRVQVGGKVLEDLVDAALVSGLRRACAAIEQSLTPDGARGLPVWGQDIRWSLLGFALEQSQGENDEESEGRVGKKKEGQPSYLDWMEIRLQMCMNDGIDEMPGMYGFNVTGRAPLAPEAIANLDRQHAADVLQARTADVVFSAALQV 569
BLAST of mRNA_L-elsbetiae_contig1173.1506.1 vs. uniprot
Match: A0A6H5KUD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD4_9PHAE) HSP 1 Score: 285 bits (730), Expect = 5.320e-78 Identity = 220/519 (42.39%), Postives = 269/519 (51.83%), Query Frame = 1
Query: 1 LHAKVSALANQVKLAKAWQDRHPACFLPVAWAFCAAVIAKWSCRGGEGEASTEGGAAGAAGRGRVGGRIYEGTSDDSMRPRQPSTFSLLALLAAFLDKDSTARGVSKGTFGGGANPTFAKQNPNIGEVFLRFSAFVQQLGVASSRETVA--PTVLSLLDNGEVEEIWAATTC----PSGKTLPTGCEKAAARP---ILVQVGGERLEDLAEASTVSQLRRTCATIERSMIPDAARGLPVWEQDIRWSLLGFALERVGSDGKEEAGGEQGMQL---PSYLDWMEVELQMCINDYIDAMPGVYGFNVTGRSPLTPTMTTELDSKLASDVMQARTANVVFAAALRVGNGERGVNSGGGSSSGANSGSSGSLFG-SDGEDEEGIDGVPMSM-SGSVSLKVRPGRSSAGVGASAEPAAGPAPVPERVVARETTTRTGPQGQGLADTPSSGSLLLPLEGLSATRTTKAMATSTQTTASTRHVTESDYRPPPGGKGKVVQAGAVLALGDRLMKEAAIVIASAKITT 1515
L +V+AL +VK AK W DRHPACFLPVAWA CAAV AKW G G GG + G G R+ + + R+PS FS+LALLAAFLDK LGV R A P L+LLD+GE+E W+A P GK +A A QVGG+ LEDL +A+ S LRR CA IE+S+ PD ARGLPVW QDIRWSLLGFA E+ + EE+ G G + PSYLDWME+ LQMC+N+ ID MPG+YGFNVTGR+PL P LD + A+DV+QARTA+VVF+AAL+VG G +G + GG AN SS SLFG S E++E +DG PM + + S+ L+V GPA E + PQ QG +T G L +G+ +GKV GAVLALGDRLMKEAA V+ASAK TT
Sbjct: 86 LDDEVAALVTKVKRAKCWHDRHPACFLPVAWAVCAAVAAKWPSDGDLG-----GGPGASCEHGAPGCRLARARA---RKARRPSPFSILALLAAFLDK----------------------------------------LGVKPGRRKSAGPPATLNLLDSGELEMWWSAAAAVAAAPKGKKPQRSDREAEAETGELATGQVGGKVLEDLVDAALASDLRRACAAIEQSLTPDGARGLPVWGQDIRWSLLGFAFEQSEGENDEESEGGVGEKREGRPSYLDWMEIRLQMCMNEGIDEMPGMYGFNVTGRAPLAPEAIANLDRQHAADVLQARTADVVFSAALQVGGGSQGQHGSGG----ANGDSSDSLFGGSASEEDEELDGEPMVVVTASLPLQVN----------------GPAAAEAE---HEPSVDVAPQ-QGTGETVEVGEGALKDDGV---------------------------------RGKV---GAVLALGDRLMKEAAGVLASAKATT 496 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1173.1506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1173.1506.1 >prot_L-elsbetiae_contig1173.1506.1 ID=prot_L-elsbetiae_contig1173.1506.1|Name=mRNA_L-elsbetiae_contig1173.1506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=773bp LHAKVSALANQVKLAKAWQDRHPACFLPVAWAFCAAVIAKWSCRGGEGEAback to top mRNA from alignment at L-elsbetiae_contig1173:9642..23922+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1173.1506.1 ID=mRNA_L-elsbetiae_contig1173.1506.1|Name=mRNA_L-elsbetiae_contig1173.1506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=14281bp|location=Sequence derived from alignment at L-elsbetiae_contig1173:9642..23922+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1173:9642..23922+ >mRNA_L-elsbetiae_contig1173.1506.1 ID=mRNA_L-elsbetiae_contig1173.1506.1|Name=mRNA_L-elsbetiae_contig1173.1506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4638bp|location=Sequence derived from alignment at L-elsbetiae_contig1173:9642..23922+ (Laminarionema elsbetiae ELsaHSoW15)back to top |