mRNA_L-elsbetiae_contig64.15069.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig64.15069.1
Unique NamemRNA_L-elsbetiae_contig64.15069.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: A0A8D1A7H5_PIG (40S ribosomal protein S7 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1A7H5_PIG)

HSP 1 Score: 362 bits (928), Expect = 1.900e-123
Identity = 186/191 (97.38%), Postives = 189/191 (98.95%), Query Frame = 1 
Query:    7 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPV 579
            MFTGA KIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQG RPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCK+DGSK+LKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFP+
Sbjct:    1 MFTGAIKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGTRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKVDGSKILKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPL 191
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: D7G463_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G463_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 2.340e-120
Identity = 192/195 (98.46%), Postives = 194/195 (99.49%), Query Frame = 1 
Query:    4 TMFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP 588
            TMFTGATKIVKPEGQEADEFEQ VAQELFNLEMSAADIK++IRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP
Sbjct:  518 TMFTGATKIVKPEGQEADEFEQQVAQELFNLEMSAADIKADIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP 712
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: A0A836C8B1_9STRA (40S ribosomal protein S7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8B1_9STRA)

HSP 1 Score: 308 bits (788), Expect = 3.480e-102
Identity = 153/186 (82.26%), Postives = 177/186 (95.16%), Query Frame = 1 
Query:   28 IVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            IVKPEGQ ADEFEQTVAQEL+NL+MSAA+IK++++DLYIT AKQV++ GGKKAII+FVPYRLLR++HKIQ RLV ELEKKFSGRHVVIIA RTILGK++AR++KT+G RPRSRTLTAVQDA+LEDLV+PTEIVGKRTRC++DG+KLLKV LDPKDQVNVETKLDTFS VYKK+TNK+VVFEFPVQE
Sbjct:    6 IVKPEGQAADEFEQTVAQELYNLQMSAAEIKADLKDLYITSAKQVELAGGKKAIILFVPYRLLRAFHKIQARLVPELEKKFSGRHVVIIAQRTILGKNFARNSKTKGPRPRSRTLTAVQDAILEDLVYPTEIVGKRTRCRVDGTKLLKVHLDPKDQVNVETKLDTFSYVYKKLTNKEVVFEFPVQE 191
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: A0A7S2XZE0_9STRA (40S ribosomal protein S7 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE0_9STRA)

HSP 1 Score: 308 bits (790), Expect = 4.260e-102
Identity = 154/192 (80.21%), Postives = 177/192 (92.19%), Query Frame = 1 
Query:   10 FTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            FTGA KIVKP GQE D+FE++VAQEL+NLEMSAA++K+E+RDLYIT AK+V+VGGGKKAIII VPY  LR++HKIQ RLVRELEKKFSGRHVV+IA RTILGKSY RSTKT+G RPRSRTLT VQ+ +LEDLV+PTEIVGKRT+CK+DGSK+LKV LDPKDQVNVETKLDTFS VYKK+TNKDVVF+FP+QE
Sbjct:   25 FTGAKKIVKPAGQEIDDFEKSVAQELYNLEMSAAELKAELRDLYITAAKEVEVGGGKKAIIIVVPYVKLRAFHKIQLRLVRELEKKFSGRHVVVIAQRTILGKSYTRSTKTKGPRPRSRTLTHVQEQILEDLVYPTEIVGKRTKCKLDGSKILKVLLDPKDQVNVETKLDTFSFVYKKLTNKDVVFQFPIQE 216
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: A0A6T5NXM7_HETAK (40S ribosomal protein S7 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NXM7_HETAK)

HSP 1 Score: 303 bits (776), Expect = 6.060e-100
Identity = 153/193 (79.27%), Postives = 173/193 (89.64%), Query Frame = 1 
Query:    7 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            M  G+ KIVKP GQE DEFE  VAQELFNLEMSA +IK+++RDLYIT AK+VDVG GKKAII+ VPY+LLR +++IQ RLVRELEKKFSGRHVVIIA RTILGKSYARSTKT+G+RPRSRTLTAVQD++LEDLV+PTEIVGKRTRC + G KLLKV LDPKDQVNVETKLDTF+ VYKK+TNKDV F+FPVQE
Sbjct:   26 MSLGSKKIVKPPGQEPDEFEAQVAQELFNLEMSAVEIKADLRDLYITAAKEVDVGPGKKAIIVVVPYKLLRKFNRIQIRLVRELEKKFSGRHVVIIAQRTILGKSYARSTKTKGLRPRSRTLTAVQDSILEDLVYPTEIVGKRTRCAVSGEKLLKVYLDPKDQVNVETKLDTFAYVYKKLTNKDVSFQFPVQE 218
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: A0A2D4C6D5_PYTIN (40S ribosomal protein S7 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6D5_PYTIN)

HSP 1 Score: 295 bits (756), Expect = 2.760e-97
Identity = 147/193 (76.17%), Postives = 171/193 (88.60%), Query Frame = 1 
Query:    7 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            MFTGA KI KPEGQ ADEFEQ VAQELFNLE SAA++K+E++DLYIT AKQVDV  G+KAI+IFVPYRL ++++KIQ RL RELEKKFSGRHVV I  RTILGK +AR+ K  G RPRSRTLTAVQ+A+L+D+V+PTEIVGKRTR ++DGSKLLKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPV +
Sbjct:    1 MFTGAAKIKKPEGQTADEFEQQVAQELFNLEASAAELKNELKDLYITAAKQVDVASGRKAIVIFVPYRLHKAFNKIQARLTRELEKKFSGRHVVFITQRTILGKGFARANKATGPRPRSRTLTAVQEAILDDIVYPTEIVGKRTRVRLDGSKLLKVYLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVHQ 193
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: A0A662XBL9_9STRA (40S ribosomal protein S7 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBL9_9STRA)

HSP 1 Score: 295 bits (756), Expect = 2.760e-97
Identity = 147/193 (76.17%), Postives = 173/193 (89.64%), Query Frame = 1 
Query:    7 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            MFTG +KIVKPEGQ  DEFEQ VAQEL+NLE+SAA+IK++++DLYIT AKQVD+  G+KAI+IFVP+RL  S+ KIQ RLVRELEKKFSGRHV+IIA RTILGK +AR+ KT G RPRSRTLTAVQ+A+L+DLV+PTEIVGKRTR ++D SKLLKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPV +
Sbjct:    1 MFTGRSKIVKPEGQTPDEFEQQVAQELYNLELSAAEIKNDLKDLYITAAKQVDISSGRKAIVIFVPFRLHASFKKIQARLVRELEKKFSGRHVIIIAQRTILGKGFARANKTSGPRPRSRTLTAVQEAILDDLVYPTEIVGKRTRVRLDSSKLLKVFLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVHQ 193
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: A0A7S2C777_9STRA (40S ribosomal protein S7 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C777_9STRA)

HSP 1 Score: 291 bits (744), Expect = 2.090e-95
Identity = 149/196 (76.02%), Postives = 172/196 (87.76%), Query Frame = 1 
Query:    7 MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVG---GGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            MFTG  KIVKPEGQE+ EFE TVAQELFNLEMSAA+IKSE+RDLYIT AK+V+VG    GK+AIIIFVP++LL+ +HKIQ RLVRELEKKFSG+HV I+A RTILGKSY+RSTKT+G RPRSRTLTAVQDA+LEDLVFPTEIVGKRTRCK+DG+K L V LD KD VNVETKL+TF+ VYK +TNK+V F FP ++
Sbjct:    1 MFTGFKKIVKPEGQESTEFENTVAQELFNLEMSAAEIKSELRDLYITAAKEVNVGPASAGKQAIIIFVPFKLLKQFHKIQARLVRELEKKFSGKHVTIVAQRTILGKSYSRSTKTKGPRPRSRTLTAVQDAILEDLVFPTEIVGKRTRCKLDGTKQLNVFLDAKDIVNVETKLETFADVYKHLTNKEVEFAFPTEQ 196
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: H3G9W8_PHYRM (40S ribosomal protein S7 n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3G9W8_PHYRM)

HSP 1 Score: 290 bits (743), Expect = 2.250e-95
Identity = 147/189 (77.78%), Postives = 168/189 (88.89%), Query Frame = 1 
Query:   19 ATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            A+KIVKPEGQ ADEFE  VAQELFNLE SAA+IK++++DLYIT AKQVD+  G+KAI+IFVP+RL  S+ KIQ RLVRELEKKFSGRHVVIIA RTILGK Y+R+    G RPRSRTLT VQ+ +L+DLVFPTEIVGKRTRC++DGSKLLKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPVQE
Sbjct:    2 ASKIVKPEGQTADEFELQVAQELFNLEQSAAEIKTDLKDLYITAAKQVDISSGRKAIVIFVPFRLHASFKKIQARLVRELEKKFSGRHVVIIAQRTILGKGYSRANHGAGPRPRSRTLTHVQEQILDDLVFPTEIVGKRTRCRLDGSKLLKVHLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVQE 190
[Close]
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Match: K3XAM7_GLOUD (40S ribosomal protein S7 n=3 Tax=Pythiaceae TaxID=4782 RepID=K3XAM7_GLOUD)

HSP 1 Score: 287 bits (734), Expect = 5.380e-94
Identity = 146/189 (77.25%), Postives = 168/189 (88.89%), Query Frame = 1 
Query:   19 ATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAKQVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRTILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDGSKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQE 585
            + KIVKPEGQ ADEFE  VAQEL NL+ SAA+IK++++DLYIT AKQVDV  G+KAI+IFVPYRL  ++ KIQ RLVRELEKKFSGRHVVIIA RTILGK Y+RS KT G RPRSRTL AVQ+A+L+DLV+PTEIVGKRTR ++DGSKLLKV LDPKDQVNVETKLDTF++VYKK+TNKDVVFEFPVQ+
Sbjct:    2 SAKIVKPEGQTADEFELQVAQELANLQQSAAEIKNDLKDLYITAAKQVDVASGRKAIVIFVPYRLHSAFKKIQARLVRELEKKFSGRHVVIIAQRTILGKGYSRSNKTNGPRPRSRTLVAVQEAILDDLVYPTEIVGKRTRVRLDGSKLLKVFLDPKDQVNVETKLDTFATVYKKLTNKDVVFEFPVQQ 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig64.15069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D1A7H5_PIG1.900e-12397.3840S ribosomal protein S7 n=1 Tax=Sus scrofa TaxID=... [more]
D7G463_ECTSI2.340e-12098.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8B1_9STRA3.480e-10282.2640S ribosomal protein S7 n=1 Tax=Tribonema minus T... [more]
A0A7S2XZE0_9STRA4.260e-10280.2140S ribosomal protein S7 n=1 Tax=Fibrocapsa japoni... [more]
A0A6T5NXM7_HETAK6.060e-10079.2740S ribosomal protein S7 n=1 Tax=Heterosigma akash... [more]
A0A2D4C6D5_PYTIN2.760e-9776.1740S ribosomal protein S7 n=1 Tax=Pythium insidiosu... [more]
A0A662XBL9_9STRA2.760e-9776.1740S ribosomal protein S7 n=2 Tax=Nothophytophthora... [more]
A0A7S2C777_9STRA2.090e-9576.0240S ribosomal protein S7 n=1 Tax=Dictyocha speculu... [more]
H3G9W8_PHYRM2.250e-9577.7840S ribosomal protein S7 n=21 Tax=Peronosporaceae ... [more]
K3XAM7_GLOUD5.380e-9477.2540S ribosomal protein S7 n=3 Tax=Pythiaceae TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig64contigL-elsbetiae_contig64:14284..17941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.3
Seed ortholog evalue2.7e-100
Seed eggNOG ortholog2880.D7G463
Preferred nameRPS7
KEGG koko:K02993,ko:K11592
KEGG Pathwayko03010,ko05206,map03010,map05206
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0002181,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0014020,GO:0015031,GO:0015833,GO:0015935,GO:0016070,GO:0016071,GO:0016072,GO:0016331,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021915,GO:0022613,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030097,GO:0030154,GO:0030162,GO:0030234,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035148,GO:0035239,GO:0035295,GO:0042176,GO:0042177,GO:0042254,GO:0042274,GO:0042886,GO:0042981,GO:0043009,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072175,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG3320@1,KOG3320@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03036
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_001435.1
Exons6
Model size1057
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig64.15069.1prot_L-elsbetiae_contig64.15069.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig64 14750..17935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.196575-UTR-L-elsbetiae_contig64:14283..147491622816706.196575-UTR-L-elsbetiae_contig64:14283..14749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig64 14284..14749 -
1691683754.268832-UTR-L-elsbetiae_contig64:14283..147491691683754.268832-UTR-L-elsbetiae_contig64:14283..14749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig64 14284..14749 -
1622816706.2832062-UTR-L-elsbetiae_contig64:17935..179411622816706.2832062-UTR-L-elsbetiae_contig64:17935..17941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig64 17936..17941 -
1691683754.3456564-UTR-L-elsbetiae_contig64:17935..179411691683754.3456564-UTR-L-elsbetiae_contig64:17935..17941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig64 17936..17941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816706.2121534-CDS-L-elsbetiae_contig64:14749..148451622816706.2121534-CDS-L-elsbetiae_contig64:14749..14845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 14750..14845 -
1691683754.284697-CDS-L-elsbetiae_contig64:14749..148451691683754.284697-CDS-L-elsbetiae_contig64:14749..14845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 14750..14845 -
1622816706.222238-CDS-L-elsbetiae_contig64:15195..152911622816706.222238-CDS-L-elsbetiae_contig64:15195..15291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 15196..15291 -
1691683754.2935348-CDS-L-elsbetiae_contig64:15195..152911691683754.2935348-CDS-L-elsbetiae_contig64:15195..15291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 15196..15291 -
1622816706.2356882-CDS-L-elsbetiae_contig64:16041..161681622816706.2356882-CDS-L-elsbetiae_contig64:16041..16168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 16042..16168 -
1691683754.3026192-CDS-L-elsbetiae_contig64:16041..161681691683754.3026192-CDS-L-elsbetiae_contig64:16041..16168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 16042..16168 -
1622816706.250141-CDS-L-elsbetiae_contig64:16495..166081622816706.250141-CDS-L-elsbetiae_contig64:16495..16608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 16496..16608 -
1691683754.3120816-CDS-L-elsbetiae_contig64:16495..166081691683754.3120816-CDS-L-elsbetiae_contig64:16495..16608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 16496..16608 -
1622816706.262823-CDS-L-elsbetiae_contig64:16906..169661622816706.262823-CDS-L-elsbetiae_contig64:16906..16966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 16907..16966 -
1691683754.3218691-CDS-L-elsbetiae_contig64:16906..169661691683754.3218691-CDS-L-elsbetiae_contig64:16906..16966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 16907..16966 -
1622816706.2731142-CDS-L-elsbetiae_contig64:17842..179351622816706.2731142-CDS-L-elsbetiae_contig64:17842..17935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 17843..17935 -
1691683754.332129-CDS-L-elsbetiae_contig64:17842..179351691683754.332129-CDS-L-elsbetiae_contig64:17842..17935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig64 17843..17935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig64.15069.1

>prot_L-elsbetiae_contig64.15069.1 ID=prot_L-elsbetiae_contig64.15069.1|Name=mRNA_L-elsbetiae_contig64.15069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MFTGATKIVKPEGQEADEFEQTVAQELFNLEMSAADIKSEIRDLYITGAK
QVDVGGGKKAIIIFVPYRLLRSYHKIQTRLVRELEKKFSGRHVVIIATRT
ILGKSYARSTKTQGIRPRSRTLTAVQDAMLEDLVFPTEIVGKRTRCKIDG
SKLLKVQLDPKDQVNVETKLDTFSSVYKKITNKDVVFEFPVQEP*
back to top

mRNA from alignment at L-elsbetiae_contig64:14284..17941-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig64.15069.1 ID=mRNA_L-elsbetiae_contig64.15069.1|Name=mRNA_L-elsbetiae_contig64.15069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3658bp|location=Sequence derived from alignment at L-elsbetiae_contig64:14284..17941- (Laminarionema elsbetiae ELsaHSoW15)
GGCACCATGTTCACCGGCGCTACCAAGATCGTAAAGCCTGAGGGCCAGGA
GGCCGATGAGTTTGAGCAGACGGTAGCCCAGGAGCTCTTCAACCTCGAGG
TGAGCGTTGTTTTCTCAGTGAGAGAGGTTGCAATATGGGACTGTGGTCGC
TACGCAGGGGGGCGCGATGAAAACCTCCGGGTGGGTCTCGGAGCGGCGCA
TGAGAAATCCAACGTATCATTTTCTATCGGCGACATCCTCTTCTATAAGC
CAAGCCGTCTGTTTTTCTATTTCCAGTTTTTGTAGCCTCCAATCATGCAT
GTGCTACGATACCATCACTGGTAATTCCGTAAGTCCACAAACTCATCATG
TAGGGTTACACTATGTAGCTATGTAGGGTTACACACGGCGCTCTTCGCCT
TTTTTTATATAGCCAACATATCCGACAACGATCAGAGATTGTGCGCTCCA
CGCTTCAAAGAAAATAGAGATGAAGTTCTCCACAAAATGCAAGCGTCAGT
CAAGGTTCGACTAGTAGCGAGGCGCGCAACTGCTGCAGATGGGAAATTCA
TTTGACAGGCAGATTTCTTCTTTCGTTGTCTTGCTTGCGGTGGGCAAGTC
TTGAGCGTCTCTCAGGTAGATTAGTAACGCTTCAGCTTCATACACATGTG
TGTGCGAGCCCCTGACCTGCGATACTCTCTCCCCTCACGATTTCTATATT
AACCCCGAGTTAGTTCGCACCAAGGTTTCAACCCCGACAGGAGAGCATCC
CCGGCATGTGTGATGCCATCAACCAGTAGCGCTTGTATCACAGAGAATCG
GACAACACGCCTCCTCTTGTGTCTGTCCGCCAACAGGCTGCCGCAGTATT
AGGTAGAACCCGCACTTTGGTCGTGACGGCAGAGATTAGATGTATTCTCA
CGTAGGTTTTGCGACCTGCAGATGAACCAGGGCTTGGCATTCCTCTTGTC
GCTTCTGCCGTGTGTTGCGCTCCAGATGTCCGCCGCGGACATCAAGTCGG
AAATCCGCGACCTCTACATCACCGGCGCAAAGCAGGTGAGTTGGTGGCGG
AGGTTGCCAAGGCCCCGATAGACCAGAGAGCAGGTTACATTGTAGCGCGG
AGAGAGCATTCCGCCACGGTCAATGTGGCTGCCGCAAAACCTGCTTAAAT
GTATGCTTGCGTTAATGGGAGTTGCATGCCTTGCTAGTTTTGTTTGGCTC
CGCGCGCTGCAGCTGCTTGCGTTAACTTATTTGTGCCTCGCACACCGGAC
CCGCCTGGTAGTTGCCGTGCTGCGATGTTGCTATCGGAGCGCCACTTGTG
TGTTGACTTCCAAAACTGTCAACGTCGCGGCAGGTGGACGTTGGGGGCGG
CAAGAAGGCCATTATCATCTTCGTACCGTACCGTCTGCTGAGGTCTTACC
ACAAGATCCAGACGCGTTTGGTGCGAGAGCTGGAGAAGAAGTTCAGGTGA
GAAAAACAAAGCTAACGGGGCAGAGGAAACTTGTGCAACAAAACACGTCG
TCGTCGTGGACGTTTTGTGGAAGACCCTGCGGTGTTGTCGGTTGGTTTCC
GGCACATGGCTGTTGTGCAGGCCGAAGCATATTTTTTTGGCTGATGCTGC
TCCACCATCAAGAGTAACAAGGATGCGACGACACTACAACGAATGGAAGA
GAAGCTGTGTCTCGACCGCTGTTACTTTTATGTCTCCTAACTCTTCCATC
GCCACCCGGTACACCCCAGCACCCCGTTCTGACCTTTGTACCCCCTTGCT
TTCGTTCGATTCACGCTCCACAGCGGACGCCACGTCGTGATCATCGCCAC
CCGCACCATCCTCGGCAAGAGCTACGCTCGCTCGACCAAGACCCAGGGAA
TCCGCCCACGCTCGCGCACCCTCACGGCCGTCCAGGACGCCATGCTCGAG
GTAAGGTTATTCCGGTGTTTTGCTACCCCCCGCCCTCATGTTTTGCCGTA
TTCTCCCCACGCGATGCAATCAGTGCTCTTCTTTAACGGCATACTTCGTA
TGGTATGGGTATTTAGTCGCTTTTCTTGGTACACACATACACACACGCTG
TGAGGGAATAGAGCCGTCGGTATTTGGTGTAGAGAGCTGGGTATTTCGCG
ATTTTAGGCGATCCAATCAGTGCTCTTCTTTAACCGCATACTTCATATGG
TATGGGTGTTTAGTCGCTTTTCTTGGTACACACATACACACACGCTGTGA
GGGAATAGAGCCGTCGGTATCTGGCGTGAGAGCTGGGTATTTCGCGATTG
CTTTTCGTATCCGCGACCTTTAGCCCGGCCGTTGGAGAATAAGCGTCCCA
TACGCGACAACCCGTGATAATGACTATTTGCGGCGATGGGAGAGTGCTCG
AACCACGGAGTTCACACCTGAAAGTGTCGTGAGGCAACGGAAAGACGAGG
CATCTTGGAACCACTTCTAGTGGCACTGATTCAAAGCGCACTGGCACTTG
AAAGCCTGGCACGTGCGGATTTGTACGCCGCTTGCTTGGCCCAATGTACT
TGCCGACAACACCTCAAATGGTTGCTTACCCTTCATTGAATCCCTTCCGG
ATCTGGCTTCACTGCTGTTGGTCACGTCAGGATCTATCGTTGCATAACTC
AACTTTATTTTCAACTCACGCGTGCTGCTGTTTCCCCCCTCGTTGTACAG
GACCTCGTGTTCCCCACCGAGATCGTCGGCAAGCGCACACGGTGCAAGAT
TGACGGCTCCAAGCTCCTCAAGGTCCAGCTCGACCCCAAGGACCAGGTGA
AGAGAGCGGGTTGGGGTATATGTATCGTAATCTCGTCGACATGTAGAATC
TACCAGGCTGGAGTGTTTCCGGTAATGCCGTCTCTTGGAATCGGTTTTAA
GATGCCTTGACGAACACACCGGACCTTCGAGATGTATAGAGGCTGTTTTT
GCGTGATTTCCATGTGGAAGTACATACAAAAATCCAACCCCGTGTTGGTG
CTCCGTATATGTTCTCGCTTTTGGTGCAGATGGTATGTTGAGAGCGAAGT
TGAGAGTTTATTATCAACACCTGTGAAATCGTTTCTGGCTGCACTTGGTT
GACGAAGTTGCCTCGCGTGTTCCGACCTGCGATATTGTCCCCGTAGGTCA
ACGTGGAGACCAAGCTCGACACCTTCTCGTCGGTGTACAAGAAGATCACC
AACAAGGACGTTGTGTTCGAGTTCCCGGTGCAGGAGCCGTAAACGTGAAG
CATTTTAGCATGCCGTTGCTAACGCCCAGCCAGCGTGTGGCATTGGTGTC
GCACTTCTAACAAGTTTTTGAGCGTGATTTTTTGCGCCACCTGCATGGCC
TTTGGCCGTGTAGCGCGACCATCTTTCGCGACCCGAACCCACCGCATGTT
GATGGGCATGACCTACGACGTGTACCTAGGGTTCGTGGGTATGCAGTGCG
ACTTCAGCGGCGTGGCCTGTGATGCGATTGTACCCTTCGGGGGTTACATG
AAAGACAGGGCCCGTTGAAGCGGTTTGTGTGCATATCTCATGTGCCCTCA
CTCGTGCCATAGGCAAATGCACCCTCCACGAGCATCAAACGACCAGCCGT
AACACGGTGCAACACAACAGTTCAGTGCGAATGTCTTCTATTCGACCCTT
CACCCAAACAATTGAGCTCATGAGAAGGATGTGCTTACTAATTTACTGTA
CGAACCCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig64:14284..17941-

>mRNA_L-elsbetiae_contig64.15069.1 ID=mRNA_L-elsbetiae_contig64.15069.1|Name=mRNA_L-elsbetiae_contig64.15069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig64:14284..17941- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCACCGGCGCTACCAAGATCGTAAAGCCTGAGGGCCAGGAGGCCGA
TGAGTTTGAGCAGACGGTAGCCCAGGAGCTCTTCAACCTCGAGATGTTCA
CCGGCGCTACCAAGATCGTAAAGCCTGAGGGCCAGGAGGCCGATGAGTTT
GAGCAGACGGTAGCCCAGGAGCTCTTCAACCTCGAGATGTCCGCCGCGGA
CATCAAGTCGGAAATCCGCGACCTCTACATCACCGGCGCAAAGCAGATGT
CCGCCGCGGACATCAAGTCGGAAATCCGCGACCTCTACATCACCGGCGCA
AAGCAGGTGGACGTTGGGGGCGGCAAGAAGGCCATTATCATCTTCGTACC
GTACCGTCTGCTGAGGTCTTACCACAAGATCCAGACGCGTTTGGTGCGAG
AGCTGGAGAAGAAGTTCAGGTGGACGTTGGGGGCGGCAAGAAGGCCATTA
TCATCTTCGTACCGTACCGTCTGCTGAGGTCTTACCACAAGATCCAGACG
CGTTTGGTGCGAGAGCTGGAGAAGAAGTTCAGCGGACGCCACGTCGTGAT
CATCGCCACCCGCACCATCCTCGGCAAGAGCTACGCTCGCTCGACCAAGA
CCCAGGGAATCCGCCCACGCTCGCGCACCCTCACGGCCGTCCAGGACGCC
ATGCTCGAGCGGACGCCACGTCGTGATCATCGCCACCCGCACCATCCTCG
GCAAGAGCTACGCTCGCTCGACCAAGACCCAGGGAATCCGCCCACGCTCG
CGCACCCTCACGGCCGTCCAGGACGCCATGCTCGAGGACCTCGTGTTCCC
CACCGAGATCGTCGGCAAGCGCACACGGTGCAAGATTGACGGCTCCAAGC
TCCTCAAGGTCCAGCTCGACCCCAAGGACCAGGACCTCGTGTTCCCCACC
GAGATCGTCGGCAAGCGCACACGGTGCAAGATTGACGGCTCCAAGCTCCT
CAAGGTCCAGCTCGACCCCAAGGACCAGGTCAACGTGGAGACCAAGCTCG
ACACCTTCTCGTCGGTGTACAAGAAGATCACCAACAAGGACGTTGTGTTC
GAGTTCCCGGTGCAGGAGCCGTAAGTCAACGTGGAGACCAAGCTCGACAC
CTTCTCGTCGGTGTACAAGAAGATCACCAACAAGGACGTTGTGTTCGAGT
TCCCGGTGCAGGAGCCGTAA
back to top