mRNA_L-elsbetiae_contig6398.15067.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6398.15067.1
Unique NamemRNA_L-elsbetiae_contig6398.15067.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6398.15067.1 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.820e-31
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 AKPEPRRRPPGATSAFDANSDDEE-GSKGEVSGVAAVNRRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKE 231
            +KP PRRRP G+TS FDANSDDEE  SKG++SGV AVN+RLAAISAKQEKQAKKEYEDAL+ADPSVFDYDRVYDGMKE
Sbjct:   36 SKPAPRRRPAGSTSVFDANSDDEEEDSKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKE 113
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BLAST of mRNA_L-elsbetiae_contig6398.15067.1 vs. uniprot
Match: I1LFA9_SOYBN (DUF2040 domain-containing protein n=6 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1LFA9_SOYBN)

HSP 1 Score: 52.4 bits (124), Expect = 4.620e-6
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    7 PEPRRRPPGATSA--FDANSDDEEGSKGEVSGVAAVNRRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKER 234
            P+P+++PP  + A  F  N DDE   + E++  A+ N+RL  +  +Q+K        ALE DPSVFDYD VYD MKE+
Sbjct:   11 PKPKKQPPRPSLANPFGFNEDDENDVEREIALQASKNKRLKEVEEQQKK--------ALEEDPSVFDYDGVYDQMKEK 80
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BLAST of mRNA_L-elsbetiae_contig6398.15067.1 vs. uniprot
Match: UPI0018ADF71E (nuclear speckle splicing regulatory protein 1-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADF71E)

HSP 1 Score: 50.4 bits (119), Expect = 2.190e-5
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:    4 KPEPRRRPPGATSAFDANSDDEEGSKGEVSGVAAVNRRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKER 234
            KP    RPP   SAF A  DD++G + E+S  A+ N+ L  I    E+Q KK    A+E DPSVFDYD VYD MKE+
Sbjct:   13 KPPAPARPPLRPSAFAA--DDDDGVEQEISRQASKNKALQKI----EEQHKK----AMEEDPSVFDYDGVYDEMKEK 79
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BLAST of mRNA_L-elsbetiae_contig6398.15067.1 vs. uniprot
Match: A0A6P5GWH8_ANACO (nuclear speckle splicing regulatory protein 1-like n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GWH8_ANACO)

HSP 1 Score: 50.1 bits (118), Expect = 3.030e-5
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:   22 RPPGATSAFDANSDDEEGSKGEVSGVAAVNRRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMKER 234
            RPP    AF    DDE+  + E+S  A+ N+ L  +    E+Q KK    ALE DPSVFDYD VYD MKE+
Sbjct:   22 RPPAPPPAFAFGGDDEDDVEREISRQASKNKALQKV----EEQHKK----ALEEDPSVFDYDGVYDEMKEK 84
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BLAST of mRNA_L-elsbetiae_contig6398.15067.1 vs. uniprot
Match: A0A1Y1YCI8_9FUNG (DUF2040 domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YCI8_9FUNG)

HSP 1 Score: 48.9 bits (115), Expect = 8.050e-5
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   37 TSAFDANSDDEEGSKGEVSGVAAVNRRLAAISAKQEKQAKKEYEDALEADPSVFDYDRVYDGMK 228
            TS F+ + DDEE      S V+  N+ LA   + + K+ KK+ E+ALE D SVFDYD VYD MK
Sbjct:   29 TSIFNNDEDDEEVP---ASSVSVTNKELARNFSFESKKTKKQQEEALEIDSSVFDYDGVYDEMK 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6398.15067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2R5_ECTSI2.820e-3184.62DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
I1LFA9_SOYBN4.620e-643.59DUF2040 domain-containing protein n=6 Tax=Glycine ... [more]
UPI0018ADF71E2.190e-549.35nuclear speckle splicing regulatory protein 1-like... [more]
A0A6P5GWH8_ANACO3.030e-547.89nuclear speckle splicing regulatory protein 1-like... [more]
A0A1Y1YCI8_9FUNG8.050e-548.44DUF2040 domain-containing protein n=1 Tax=Basidiob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6398contigL-elsbetiae_contig6398:10669..10902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue4.7e-27
Seed eggNOG ortholog2880.D7G2R5
Preferred nameNSRP1
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2117@1,KOG2117@2759
EC3.4.17.22,3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.9140453-CDS-L-elsbetiae_contig6398:10668..109021622816705.9140453-CDS-L-elsbetiae_contig6398:10668..10902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6398 10669..10902 +
1691683753.99532-CDS-L-elsbetiae_contig6398:10668..109021691683753.99532-CDS-L-elsbetiae_contig6398:10668..10902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6398 10669..10902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6398.15067.1prot_L-elsbetiae_contig6398.15067.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6398 10669..10902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6398.15067.1

>prot_L-elsbetiae_contig6398.15067.1 ID=prot_L-elsbetiae_contig6398.15067.1|Name=mRNA_L-elsbetiae_contig6398.15067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
AKPEPRRRPPGATSAFDANSDDEEGSKGEVSGVAAVNRRLAAISAKQEKQ
AKKEYEDALEADPSVFDYDRVYDGMKER
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mRNA from alignment at L-elsbetiae_contig6398:10669..10902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6398.15067.1 ID=mRNA_L-elsbetiae_contig6398.15067.1|Name=mRNA_L-elsbetiae_contig6398.15067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig6398:10669..10902+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAAGCCCGAGCCTCGGCGCAGACCGCCCGGAGCAACGTCGGCATTTGA
CGCCAACTCGGACGACGAAGAGGGTTCCAAGGGCGAAGTCAGCGGGGTGG
CGGCGGTCAACAGGAGGTTGGCGGCGATCTCGGCCAAGCAGGAGAAGCAG
GCGAAGAAGGAGTACGAGGACGCCCTAGAGGCCGACCCGTCGGTGTTCGA
CTACGACCGGGTCTACGACGGCATGAAGGAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6398:10669..10902+

>mRNA_L-elsbetiae_contig6398.15067.1 ID=mRNA_L-elsbetiae_contig6398.15067.1|Name=mRNA_L-elsbetiae_contig6398.15067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig6398:10669..10902+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAAGCCCGAGCCTCGGCGCAGACCGCCCGGAGCAACGTCGGCATTTGA
CGCCAACTCGGACGACGAAGAGGGTTCCAAGGGCGAAGTCAGCGGGGTGG
CGGCGGTCAACAGGAGGTTGGCGGCGATCTCGGCCAAGCAGGAGAAGCAG
GCGAAGAAGGAGTACGAGGACGCCCTAGAGGCCGACCCGTCGGTGTTCGA
CTACGACCGGGTCTACGACGGCATGAAGGAGAGGGCCAAGCCCGAGCCTC
GGCGCAGACCGCCCGGAGCAACGTCGGCATTTGACGCCAACTCGGACGAC
GAAGAGGGTTCCAAGGGCGAAGTCAGCGGGGTGGCGGCGGTCAACAGGAG
GTTGGCGGCGATCTCGGCCAAGCAGGAGAAGCAGGCGAAGAAGGAGTACG
AGGACGCCCTAGAGGCCGACCCGTCGGTGTTCGACTACGACCGGGTCTAC
GACGGCATGAAGGAGAGG
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