prot_L-elsbetiae_contig6396.15064.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6396.15064.1
Unique Nameprot_L-elsbetiae_contig6396.15064.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length37
Homology
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BLAST of mRNA_L-elsbetiae_contig6396.15064.1 vs. uniprot
Match: D7G487_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G487_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 9.070e-15
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0 
Query:    1 VPKGKIENKKASYAVGPCLLFFFLFVVVGSSIFQILK 37
            VPKGKIENKK  YAVGPCLLFFFLFVV+GSS+FQ+LK
Sbjct:   23 VPKGKIENKKTGYAVGPCLLFFFLFVVLGSSLFQVLK 59
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6396.15064.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G487_ECTSI9.070e-1586.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 2..36
e-value: 1.4E-12
score: 47.4
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..37
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6396contigL-elsbetiae_contig6396:27..137 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6396.15064.1mRNA_L-elsbetiae_contig6396.15064.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6396 27..137 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6396.15064.1 ID=prot_L-elsbetiae_contig6396.15064.1|Name=mRNA_L-elsbetiae_contig6396.15064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
VPKGKIENKKASYAVGPCLLFFFLFVVVGSSIFQILK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010580ER_stress-assoc