mRNA_L-elsbetiae_contig6395.15063.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6395.15063.1
Unique NamemRNA_L-elsbetiae_contig6395.15063.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6395.15063.1 vs. uniprot
Match: D7G3L5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.460e-42
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 2 
Query:    2 RLVFTVKDQSTEIVPAGRKAVAGGGDVRELGWGMIHINKATMSSQEVSMEMYRAPVDLSQKALAPIDLFLSGYVTLTTAQVDMDAAARR 268
            RLVFTVKDQSTE+V  GR+ VAG GDVRELGWGMIH+NK+TMSSQEVSMEMY+APVDLSQKAL PIDLFLSGYVTLTTAQVDMDAAA R
Sbjct: 1757 RLVFTVKDQSTEVVSTGRRGVAGSGDVRELGWGMIHVNKSTMSSQEVSMEMYQAPVDLSQKALVPIDLFLSGYVTLTTAQVDMDAAAAR 1845
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6395.15063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3L5_ECTSI1.460e-4287.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6395contigL-elsbetiae_contig6395:4275..5940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6395.15063.1prot_L-elsbetiae_contig6395.15063.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6395 4275..5938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816705.6219625-CDS-L-elsbetiae_contig6395:4274..44101622816705.6219625-CDS-L-elsbetiae_contig6395:4274..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6395 4275..4410 +
1691683753.7567558-CDS-L-elsbetiae_contig6395:4274..44101691683753.7567558-CDS-L-elsbetiae_contig6395:4274..4410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6395 4275..4410 +
1622816705.632032-CDS-L-elsbetiae_contig6395:5031..51101622816705.632032-CDS-L-elsbetiae_contig6395:5031..5110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6395 5032..5110 +
1691683753.7661142-CDS-L-elsbetiae_contig6395:5031..51101691683753.7661142-CDS-L-elsbetiae_contig6395:5031..5110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6395 5032..5110 +
1622816705.6446307-CDS-L-elsbetiae_contig6395:5856..59381622816705.6446307-CDS-L-elsbetiae_contig6395:5856..5938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6395 5857..5938 +
1691683753.7763479-CDS-L-elsbetiae_contig6395:5856..59381691683753.7763479-CDS-L-elsbetiae_contig6395:5856..5938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6395 5857..5938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6395.15063.1

>prot_L-elsbetiae_contig6395.15063.1 ID=prot_L-elsbetiae_contig6395.15063.1|Name=mRNA_L-elsbetiae_contig6395.15063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
AARLHRQGPVYGDRARRAEGGCGGRGRAGAGVGDDPHQQGHHELSGSEHG
DVQSPGGPVAEGPGAHRPLLVWLRHAHDGTGGHGRCGAPVTALTCPPPP
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mRNA from alignment at L-elsbetiae_contig6395:4275..5940+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6395.15063.1 ID=mRNA_L-elsbetiae_contig6395.15063.1|Name=mRNA_L-elsbetiae_contig6395.15063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1666bp|location=Sequence derived from alignment at L-elsbetiae_contig6395:4275..5940+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTCGTCTTCACCGTCAAGGACCAGTCTACGGAGATCGTGCCCGCCG
GGCGGAAGGCGGTTGCGGGGGGCGGGGACGTGCGGGAGCTGGGGTGGGGG
ATGATCCACATCAACAAGGCCACCATGAGCTCTCAGGTCGGTGCCCTCTT
TCTGCCCCAGGCTGCCTGCGCACACCATCTGGGTAAAACATGCACCACGA
GTCAATCTCACCAGCGGTAGCTAGCTGGGCACCGCTCTGCAGAGACACAT
GTAGGGATATACATGCTCGAAGCACATGTGTACATATCAACTAAATATGG
TTTAAGAATGGTATGATGCTCTGGTCGAGGGAAGCCCTTGCTGCTGTTGT
TGAGCTGATATGATTGGGCGTCGTGGCCGTTTGTTTTTTGGGCGTCCATT
GTCTTTGCTTTTTGTCGTGTTTGGTGTGGTGTGCTTTTTTATTGTTGGTA
CGCACAATACGCAGATTCACGAAGTAAGTATCGCGGTGGACTAACCAAAT
GCACTTGTGATATCTACCACTGGCTTCCCTTGAGGCAACAGCAGCTTGGC
TTTTACACGAACCTGGCTTGTTATTTGCCGCCTCTGATAAACCCCGGCGG
AGGGCTCCCTGAGGCCATTGCCTTTTACCCACGTCTCATGCTCGTTCCAA
ACCTTGTTGTGCATGCTACTACATATAGTTTTTGATCCGATTGTTGATTT
TCGCAGAGATACTATTTAGCGATCATCGTGCGCTGTCGCTTTTTTTATTT
TTTTTAGGAAGTGAGCATGGAGATGTACAGAGCCCCGGTGGACCTGTCGC
AGAAGGCCCTGGCGCCCATCGACCTCTTCTTGTCTGGTGAGATTTGCTGT
TGTCGCCGTCGTTCTCTTTTTGGCGCTTCGTTGGACAGCGGCTGGCGAGG
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCACCCCCCCCACCCCCCACACCCACCCACCACCCACCACA
CTAACACNNNNNNNNNNTTTTTTTTTTTGTTTTTTTTTTTTTCTCGCTTT
TTTTTTGGGGTGGTTTTTTTGGGGGGGGGGGGGGGGGGGCCCCCCCCCCC
CCCCCCCCCCCCACGCACACGCACACACACACACACACACACACACACAC
ACACACACACACACTCTTTTCGAAACTGATTCTACGTTTGTCGTGTTTGT
TTGGGCATGTGGCCGCCTCGCCTGTTTTGTTTCTTGCGTAGGACGAACCC
ATGGACCATTCGTGTGGAACACGTGCTACAAGAGTTTGGTTTGGGGGGGG
GGGATCGGAGTATGACTTTGGGTTCGCTTGTTGAACGCGCGCACCCCTTT
TGACAACTCGTTCATGGAGGCATGGTGTTTCGGTCTCAGCCCCAGGTAGC
ACACACCATCACTATTGGGTGTTTTTTTGTCCCGGTTGTTGATGTGCATA
CTCGACCCACGCCTTTCTCTGGGGGCGCTCCTGAGCGGCTTGAGCGTGTC
GTGGTCTGGTCTCGTTGTCCTTGCGTTTCCTGATGTGTGCTGTTTGCCCC
CCACTCTGCGCACATGCACCGTCGCCGTGCAGGCTACGTCACGCTCACGA
CGGCACAGGTGGACATGGACGCTGCGGCGCGCCGGTCACAGCATTAACTT
GCCCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6395:4275..5940+

>mRNA_L-elsbetiae_contig6395.15063.1 ID=mRNA_L-elsbetiae_contig6395.15063.1|Name=mRNA_L-elsbetiae_contig6395.15063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig6395:4275..5940+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTCGTCTTCACCGTCAAGGACCAGTCTACGGAGATCGTGCCCGCCG
GGCGGAAGGCGGTTGCGGGGGGCGGGGACGTGCGGGAGCTGGGGTGGGGG
ATGATCCACATCAACAAGGCCACCATGAGCTCTCAGGCGGCTCGTCTTCA
CCGTCAAGGACCAGTCTACGGAGATCGTGCCCGCCGGGCGGAAGGCGGTT
GCGGGGGGCGGGGACGTGCGGGAGCTGGGGTGGGGGATGATCCACATCAA
CAAGGCCACCATGAGCTCTCAGGAAGTGAGCATGGAGATGTACAGAGCCC
CGGTGGACCTGTCGCAGAAGGCCCTGGCGCCCATCGACCTCTTCTTGTCT
GGAAGTGAGCATGGAGATGTACAGAGCCCCGGTGGACCTGTCGCAGAAGG
CCCTGGCGCCCATCGACCTCTTCTTGTCTGGCTACGTCACGCTCACGACG
GCACAGGTGGACATGGACGCTGCGGCGCGCCGGTCACAGCATTAACTTGC
CCCCCCCCCCCCGCTACGTCACGCTCACGACGGCACAGGTGGACATGGAC
GCTGCGGCGCGCCGGTCACAGCATTAACTTGCCCCCCCCCCCCC
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