mRNA_L-elsbetiae_contig6391.15059.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6391.15059.1 vs. uniprot
Match: D7FNL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL3_ECTSI) HSP 1 Score: 702 bits (1813), Expect = 1.140e-231 Identity = 433/695 (62.30%), Postives = 480/695 (69.06%), Query Frame = 1 Query: 214 LFRVGDPVMASTSGKPAR----EAAVIEVDPSDRSRFRVAFKDKRKKGGWRDKSELSGLPRRTGA-------AGSTAGQPRPLNDPLVAVDAAAAQAPTGRGEASSXXXXXXXXXXXXXXXXXXXXXXXXLARAFSHLLEKLDTQRSTAGAAAVIGTRAPAARESGVVSSPXXXXXXXXXXXXXXXXSSSVGAD-----------------QPKKKGAKPNRGSAAS-------LPTKASRKKGWQRPKIVTPGSAEGRPEAALRTSHPTEPIRPRRQFKVQQQARVTPKARKAAANTSSSSTAGGAAPRSSLSAGR----HAPRRMLCQPSHSLQDAQRGLYGGGXXXXXXXXXXXXXXXSADESDV-RRGRRTRRQVHPSLSEDTMAAAVGGAETGYGDCEDGSEEEEGGGSGAYGDAPFRFRTSEVAPWGEGDTPLIKVRLSLLEGGAPLSAERSALAVVTFAFDRHRYSGEQLANVLTAEGFLCYRDEGSRVFVLTESKEADQREALRRVREVALSRCGVQVEVAPWLEGRLALDTFLDNHRRVLDLVIRHRLACGMWSEVGGVYFNGLFCGRRTKRTYNGVRLGINLAVDHNRALESGVWELWVTAEPAVHHFSPVDWWALMQEKRDKGLPDFSGSKSDDLEERLQVVCLPKLSRGVVYDVQEDAFEMDRLQEANLRRGYLVGPRSEDDM 2178 LF VG+ V+ ST+GK A EA V+EVDPSD SRFRVAFK+KRK+GGWR +SELS L RRTGA A + G P + + + + A G AS A ++K+ +++ A A A RESG +S P XXXXXXXXXXXXXX +P KKG + + K RKKGWQRP +VTPGS EGRPE+ALRT+HPTE IRPR+QFKVQQ ARVTPKAR A +S+ S+ G AAPRSS SAGR APRRMLCQPSHS++DA+RG + GG DESDV RRGRR RRQVHPSLSEDTMAAA GG E+ Y EDG GDAPFRFRTSEVAPWGEGD PLIKVRLSLLEG APLSAERSALAVVTF FDRHRYS EQLANVLTAEGFLCYRDE RVFVLTESKEADQ+EALRRVRE+ALSRCGV+V+ PWLEGR ALD FLDNHR VLDL+IRHRLACGMWSEVGGVYFN LFCGRR+KRT+NGVRL INLAV HNRALE+GVWELW+T EP VH FSPVDWWALMQEK DKGL DFSGSKSDDLEERLQVVCLPKL+RGVV DV+EDAFEMD LQEANL+RGY VGPRSED+M Sbjct: 426 LFGVGEAVLVSTAGKTAATASFEATVVEVDPSDSSRFRVAFKNKRKQGGWRHRSELSALMRRTGARSTATRPASGSVGNAGPTSGSSASHEKSRAGMLGQGGRASEAPALGAASEARARAKGPPGQGLQRSASQGERPVDKVGNRKTAAPA-----MDTTAVRESGGISGPPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQAIKKKPVKKGGQAKXXXXXXXXXXXXXITKKTPRKKGWQRPTVVTPGSVEGRPESALRTTHPTEIIRPRKQFKVQQ-ARVTPKAR---AGSSNPSSRGAAAPRSSFSAGRGGSASAPRRMLCQPSHSVRDAKRGGFEGGDGGDRSSGVGGGAGAD-DESDVVRRGRRARRQVHPSLSEDTMAAANGGIESDYRSDEDGXXXXX---XXXXGDAPFRFRTSEVAPWGEGDRPLIKVRLSLLEGDAPLSAERSALAVVTFVFDRHRYSAEQLANVLTAEGFLCYRDEDKRVFVLTESKEADQKEALRRVRELALSRCGVEVKATPWLEGRPALDEFLDNHRGVLDLIIRHRLACGMWSEVGGVYFNALFCGRRSKRTFNGVRLQINLAVSHNRALETGVWELWMTVEPVVHRFSPVDWWALMQEKEDKGLADFSGSKSDDLEERLQVVCLPKLTRGVVDDVKEDAFEMDLLQEANLKRGYYVGPRSEDEM 1107
BLAST of mRNA_L-elsbetiae_contig6391.15059.1 vs. uniprot
Match: A0A6H5L2K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K3_9PHAE) HSP 1 Score: 657 bits (1696), Expect = 4.040e-214 Identity = 418/704 (59.38%), Postives = 469/704 (66.62%), Query Frame = 1 Query: 214 LFRVGDPVMASTSGKPAR----EAAVIEVDPSDRSRFRVAFKDKRKKGGWRDKSELSGLPRRTGAAGSTAGQPRPLN-DPLVAVDAAAAQAPTGR----GEASSXXXXXXXXXXXXXXXXXXXXXXXXLARAFSHLLEKLDTQRSTAGAAAVIGTRAPAARESGVVSSPXXXXXXXXXXXXXXXXSSSV-------------GADQPKKKGAKPNRGSAASLPTKASRKK-------------GWQRPKIVTPGSAEGRPEAALRTSHPTEPIRPRRQFKVQQQARVTPKARKAAANTSSSSTAGGAAPRSSLSAGR--HAPRRMLCQPSHSLQDAQRGLYGGGXXXXXXXXXXXXXXXSADESDV-RRGRRTRRQVHPSLSEDTMAAAVGGAETGYGDCEDGSEEEEGGGSGAYG--DAPFRFRTSEVAPWGEGDTPLIKV---------RLSLLEGGAPLSAERSALAVVTFAFDRHRYSGEQLANVLTAEGFLCYRDEGSRVFVLTESKEADQREALRRVREVALSRCGVQVEVAPWLEGRLALDTFLDNHRRVLDLVIRHRLACGMWSEVGGVYFNGLFCGRRTKRTYNGVRLGINLAVDHNRALESGVWELWVTAEPAVHHFSPVDWWALMQEKRDKGLPDFSGSKSDDLEERLQVVCLPKLSRGVVYDVQEDAFEMDRLQEANLRRGYLVGPRSEDDM 2178 LF VG+ V+ ST+GK A EA V+EVDPSD SRFRVAFK+KRK+GGWR +SELS L RRTGA STA +P + A ++A+ R G+ L R+ S +D S A+V+ A A E G VS P XXXXXXXXX G + KK K +G A GWQRP +VTPGSAEGRPE+ALRT+HPT IRPR+QFKVQQ AR TPK R +S ++ G PRSS SAGR APRRMLCQPSHS++DA+RG + GG DESDV RRGRR RRQVHPSLSEDTMAAA GG E+ YG +GS E DAPFRFRTSE APWGEGD PLIKV RLSLLEG APLSAERSALAVVTF FDRHRYS EQLANVLTAEGFLCYR+EG+RVFVLTESKEA+Q+EAL RVRE+ALSRCGV+V+ PWL+GR AL+ FLDNHR VLDL+IRHRLACGMWSEVGGVYFN LFCGRR+KRT+NGVRL INLAV HNRALE+GVWELW+T EP VH FSPVDWWALMQEK DKGL DFSGSKSD+LEERLQVVCLPKL+RGVV DV+EDAFEMD LQEANL+RGY VGPRSED+M Sbjct: 434 LFGVGEAVLVSTAGKTAATASFEATVVEVDPSDSSRFRVAFKNKRKQGGWRHRSELSALIRRTGAR-STATRPASGSVGNAGATSGSSARHERSRAGVLGQGGRASGAPALDAASEARAGAKRPPGQCLQRSASEGERPVDKVGSRKATASVMD--ATAVGEGGAVSRPPKRKRSAXXXXXXXXXXXXXXXXXXXXXXXXXXGVEAINKKPVK--KGGHAKXXXXXXXXXXXXXXXXXXXXXXGWQRPTVVTPGSAEGRPESALRTTHPTGIIRPRKQFKVQQ-ARETPKNR---TGSSDPTSRGATTPRSSFSAGRGGSAPRRMLCQPSHSVRDAKRGGFEGGDGGDRSSGVGGGAGAD-DESDVVRRGRRARRQVHPSLSEDTMAAANGGIESDYGSGAEGSGEXXXXXXXXXXXXDAPFRFRTSEFAPWGEGDRPLIKVETALMEAKVRLSLLEGDAPLSAERSALAVVTFVFDRHRYSAEQLANVLTAEGFLCYREEGTRVFVLTESKEANQKEALMRVRELALSRCGVEVKATPWLKGRPALNEFLDNHRGVLDLIIRHRLACGMWSEVGGVYFNALFCGRRSKRTFNGVRLQINLAVSHNRALETGVWELWMTVEPVVHRFSPVDWWALMQEKEDKGLADFSGSKSDELEERLQVVCLPKLTRGVVDDVKEDAFEMDLLQEANLKRGYYVGPRSEDEM 1127 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6391.15059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6391.15059.1 >prot_L-elsbetiae_contig6391.15059.1 ID=prot_L-elsbetiae_contig6391.15059.1|Name=mRNA_L-elsbetiae_contig6391.15059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=726bp PAAPLPRLGAAGAEAEISSSSAPPSDPVEPQPSSSAATAARDPSGSTSAPback to top mRNA from alignment at L-elsbetiae_contig6391:404..5857- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6391.15059.1 ID=mRNA_L-elsbetiae_contig6391.15059.1|Name=mRNA_L-elsbetiae_contig6391.15059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5454bp|location=Sequence derived from alignment at L-elsbetiae_contig6391:404..5857- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6391:404..5857- >mRNA_L-elsbetiae_contig6391.15059.1 ID=mRNA_L-elsbetiae_contig6391.15059.1|Name=mRNA_L-elsbetiae_contig6391.15059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4356bp|location=Sequence derived from alignment at L-elsbetiae_contig6391:404..5857- (Laminarionema elsbetiae ELsaHSoW15)back to top |