prot_L-elsbetiae_contig6390.15057.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6390.15057.1
Unique Nameprot_L-elsbetiae_contig6390.15057.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length130
Homology
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.140e-47
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 0
Query:   14 MSNSISQGAIANIMAGSTGANGYNPVVQVVSLKKMTQAVGNERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGNIGNPVNFAE 130
            M+N IS+GAI  IM G+TGA GYNP VQVVSLKKMT A G +RWRLVLSDG+H+AQSMLATQQNEMI+SG+LKELCI+ L+DYIVNVVQNKRLIILLKL+V SGP   IG+P+NF+E
Sbjct:    1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNA-GTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPAPKIGDPINFSE 116          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: D7FUU2_ECTSI (Rep-A_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU2_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 4.480e-35
Identity = 65/83 (78.31%), Postives = 76/83 (91.57%), Query Frame = 0
Query:   48 MTQAVGNERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGNIGNPVNFAE 130
            MT A G +RWRLVLSDG+H+AQSMLATQQNEMI+SG+LKELCI+ L+DYIVNVVQNKRLIILLKL+V SGPT  IG+P+NF+E
Sbjct:    1 MTNA-GTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSE 82          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 105 bits (262), Expect = 7.480e-24
Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   18 ISQGAIANIMAGSTGANGYNPVVQVVSLKKMTQAVGNERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGNIGNPVN 127
            ++ G+I  I+ G     G  P +QV+++KK+ Q  G +R+RL++SDG++YAQ MLATQ N +++S EL+ELCIVKLT+Y+VN VQ +R++I L +EV SGP   +G+P N
Sbjct:    4 LTSGSIQQIVNGEV--TGLTPTLQVINVKKV-QGAGADRFRLIISDGQYYAQCMLATQLNHLVSSNELQELCIVKLTNYVVNNVQGRRIVIGLAVEVVSGPVPKVGDPQN 110          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.100e-23
Identity = 53/112 (47.32%), Postives = 81/112 (72.32%), Query Frame = 0
Query:   18 ISQGAIANIMAGSTGANGYNPVVQVVSLKKMTQAVGN-ERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGNIGNPVNF 128
            ++QGAI  I+  S G +G+ P+VQV+S+KKMT A G  ER+R+V+SDG+H+ QSML T QN++ITSG++ E C++ L ++I+N +  K ++I+L+  V SG    IG+P  F
Sbjct:    6 VTQGAIQRIITAS-GQDGFLPIVQVLSIKKMTAAAGQGERYRVVVSDGQHHQQSMLTTSQNDLITSGQMVEGCLICLDEFILNQIGAKSIVIILRASVLSGAMPKIGDPTAF 116          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: A0A317XXN4_9BASI (Replication protein A subunit n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XXN4_9BASI)

HSP 1 Score: 101 bits (251), Expect = 2.280e-22
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 0
Query:   18 ISQGAIANIMAGSTGAN-GYNPVVQVVSLKKM-----TQAVGNERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGN-IGNPVNFAE 130
            ++ GAIA ++  S  +N   NPV Q++S+KK+     T A   +R+R++LSDG HYAQ+MLA+Q+  M+ SGEL++ CIVK+  Y  N VQN+R++ILL L+V SGP  + +GNP+N  E
Sbjct:    6 LTHGAIAQMIQSSDTSNLVQNPVCQILSIKKIQATSTTAANVGDRYRIILSDGVHYAQAMLASQKRTMVESGELEKNCIVKVLQYAANSVQNRRILILLDLQVLSGPAPDRLGNPINVDE 125          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: I2FRR5_USTH4 (Replication protein A subunit n=1 Tax=Ustilago hordei (strain Uh4875-4) TaxID=1128400 RepID=I2FRR5_USTH4)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-21
Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 0
Query:   16 NSISQGAIANIMAGSTGANGY-NPVVQVVSLKKMTQAVGN-----ERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGN-IGNPVN 127
            N +SQGAIA ++  +  AN   NP+ Q++S+KK+  +  +     +R+R++LSDG HYAQSMLA+Q+  M+ SGEL++ C+V+++ Y  N VQN+R++ILL LEV   PT + +G+P N
Sbjct:    4 NDLSQGAIAQMIQTADPANSVQNPICQILSIKKIQASATSASNVGDRYRIILSDGVHYAQSMLASQKRSMVESGELEKHCLVRISQYASNSVQNRRILILLDLEVAHKPTADRLGSPTN 122          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: R9P362_PSEHS (Replication protein A subunit n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9P362_PSEHS)

HSP 1 Score: 97.1 bits (240), Expect = 7.290e-21
Identity = 53/123 (43.09%), Postives = 85/123 (69.11%), Query Frame = 0
Query:   16 NSISQGAIANIM--AGSTGANGYNPVVQVVSLKKMTQAVGN-----ERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGN-IGNPVNFAE 130
            N +SQG+IA ++  A    ++  NPV Q++S+KK+  +  +     +R+R++LSDG HYAQ+MLA+Q+  M+ SGEL++ C+V++T +  N VQN+R++ILL L+V   PT + +GNP N  E
Sbjct:  122 NDLSQGSIAQMIQTADPASSSVQNPVCQILSIKKIQASATSASNVGDRYRIILSDGVHYAQAMLASQKRSMVESGELEKHCLVRITQFASNSVQNRRILILLDLDVVHKPTADRLGNPTNVDE 244          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: A0A199VIT2_ANACO (Replication protein A 70 kDa DNA-binding subunit C n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VIT2_ANACO)

HSP 1 Score: 90.5 bits (223), Expect = 7.980e-20
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 0
Query:   18 ISQGAIANIMAGSTGANGYNPVVQVVSLKKMTQAVGN-ERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGNIGNPVNF 128
            +++GA+A I  G  GA G  PV+QV  L+ +  A    ER+R++LSDG H  Q+MLATQ N ++ SG L++  IV+L +YI NV+Q +R+II++ LEV  G +  IGNP  +
Sbjct:    7 LTRGAVAAISEG--GAEGMRPVLQVWDLRLVNTAQSTTERYRMLLSDGVHMQQAMLATQMNGIVKSGSLQKGSIVQLNEYICNVIQGRRIIIIINLEVLRGESEMIGNPKTY 116          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: A0A0D1CUI6_USTMA (Replication protein A subunit n=10 Tax=Ustilaginaceae TaxID=5268 RepID=A0A0D1CUI6_USTMA)

HSP 1 Score: 93.2 bits (230), Expect = 1.570e-19
Identity = 53/123 (43.09%), Postives = 85/123 (69.11%), Query Frame = 0
Query:   16 NSISQGAIANIMAGSTGANG--YNPVVQVVSLKKMTQAVGN-----ERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGN-IGNPVNFAE 130
            N +SQGAIA ++  S  A+    NPV Q++S+KK+  +  +     +R+R++LSDG +YAQ+MLA+Q+  M+ SGEL++ C+V++T +  N VQN+R++ILL L+V   PT + +G+P N  E
Sbjct:    4 NDLSQGAIAQMIQTSDPASSSVQNPVCQILSIKKIQASATSAANVGDRYRIILSDGINYAQAMLASQKRSMVESGELEKNCLVRVTQFASNSVQNRRILILLDLDVVHKPTEDRLGHPTNVEE 126          
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Match: A0A1D1XHA3_9ARAE (Replication protein A subunit n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XHA3_9ARAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.640e-19
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 0
Query:   17 SISQGAIANIMAGSTGANGYNPVVQVVSLKKMTQAVGN--ERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNVVQNKRLIILLKLEVCSGPTGNIGNP 125
            S+++GAIA+I  G  GA G  PV+QVV LK + Q V N  ER+R+VLSDG H  Q+MLATQ N M+ SG+L++  +V+L ++I N++QN+++II+L LEV       IG P
Sbjct:    5 SLTRGAIADITNG--GAEGMKPVLQVVDLK-LVQTVQNTTERFRMVLSDGVHAQQAMLATQMNTMVKSGQLQKGSVVQLNEFICNLIQNRKIIIVLSLEVILEQCNTIGEP 112          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6390.15057.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE1.140e-4776.07Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU2_ECTSI4.480e-3578.31Rep-A_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XQ94_HETAK7.480e-2449.09Replication protein A subunit n=1 Tax=Heterosigma ... [more]
A0A835Z8X4_9STRA9.100e-2347.32Replication protein A subunit n=1 Tax=Tribonema mi... [more]
A0A317XXN4_9BASI2.280e-2247.50Replication protein A subunit n=1 Tax=Testicularia... [more]
I2FRR5_USTH41.080e-2145.38Replication protein A subunit n=1 Tax=Ustilago hor... [more]
R9P362_PSEHS7.290e-2143.09Replication protein A subunit n=1 Tax=Pseudozyma h... [more]
A0A199VIT2_ANACO7.980e-2045.54Replication protein A 70 kDa DNA-binding subunit C... [more]
A0A0D1CUI6_USTMA1.570e-1943.09Replication protein A subunit n=10 Tax=Ustilaginac... [more]
A0A1D1XHA3_9ARAE1.640e-1949.55Replication protein A subunit n=1 Tax=Anthurium am... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007199Replication factor-A protein 1, N-terminalPFAMPF04057Rep-A_Ncoord: 18..115
e-value: 5.4E-29
score: 100.2
NoneNo IPR availableGENE3D2.40.50.140coord: 16..130
e-value: 1.5E-36
score: 126.7
NoneNo IPR availablePANTHERPTHR23273:SF33coord: 16..127
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 16..127
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 14..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6390contigL-elsbetiae_contig6390:4409..7344 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6390.15057.1mRNA_L-elsbetiae_contig6390.15057.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6390 4408..7344 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6390.15057.1 ID=prot_L-elsbetiae_contig6390.15057.1|Name=mRNA_L-elsbetiae_contig6390.15057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
RSNKAISQVQFSTMSNSISQGAIANIMAGSTGANGYNPVVQVVSLKKMTQ
AVGNERWRLVLSDGKHYAQSMLATQQNEMITSGELKELCIVKLTDYIVNV
VQNKRLIILLKLEVCSGPTGNIGNPVNFAE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007199Rep_factor-A_N
IPR012340NA-bd_OB-fold