mRNA_L-elsbetiae_contig6387.15052.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6387.15052.1
Unique NamemRNA_L-elsbetiae_contig6387.15052.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6387.15052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6387contigL-elsbetiae_contig6387:2438..5876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1060
Cds size1059
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6387.15052.1prot_L-elsbetiae_contig6387.15052.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6387 2438..5876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816704.7141914-CDS-L-elsbetiae_contig6387:2437..25171622816704.7141914-CDS-L-elsbetiae_contig6387:2437..2517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 2438..2517 -
1691683753.131369-CDS-L-elsbetiae_contig6387:2437..25171691683753.131369-CDS-L-elsbetiae_contig6387:2437..2517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 2438..2517 -
1622816704.7246785-CDS-L-elsbetiae_contig6387:3006..32581622816704.7246785-CDS-L-elsbetiae_contig6387:3006..3258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 3007..3258 -
1691683753.1416028-CDS-L-elsbetiae_contig6387:3006..32581691683753.1416028-CDS-L-elsbetiae_contig6387:3006..3258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 3007..3258 -
1622816704.7360084-CDS-L-elsbetiae_contig6387:3680..39381622816704.7360084-CDS-L-elsbetiae_contig6387:3680..3938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 3681..3938 -
1691683753.151012-CDS-L-elsbetiae_contig6387:3680..39381691683753.151012-CDS-L-elsbetiae_contig6387:3680..3938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 3681..3938 -
1622816704.746797-CDS-L-elsbetiae_contig6387:5066..53121622816704.746797-CDS-L-elsbetiae_contig6387:5066..5312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 5067..5312 -
1691683753.1625683-CDS-L-elsbetiae_contig6387:5066..53121691683753.1625683-CDS-L-elsbetiae_contig6387:5066..5312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 5067..5312 -
1622816704.758316-CDS-L-elsbetiae_contig6387:5493..56161622816704.758316-CDS-L-elsbetiae_contig6387:5493..5616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 5494..5616 -
1691683753.1772084-CDS-L-elsbetiae_contig6387:5493..56161691683753.1772084-CDS-L-elsbetiae_contig6387:5493..5616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 5494..5616 -
1622816704.7701373-CDS-L-elsbetiae_contig6387:5776..58761622816704.7701373-CDS-L-elsbetiae_contig6387:5776..5876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 5777..5876 -
1691683753.1858118-CDS-L-elsbetiae_contig6387:5776..58761691683753.1858118-CDS-L-elsbetiae_contig6387:5776..5876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6387 5777..5876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6387.15052.1

>prot_L-elsbetiae_contig6387.15052.1 ID=prot_L-elsbetiae_contig6387.15052.1|Name=mRNA_L-elsbetiae_contig6387.15052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=353bp
QQPIVSRAGVDVTMSATGPPISSPSSSFDWLDEGAPGMAVAFPPGTDEAA
FVAGFKLNVEGGADIEASAGFSASGVAPADGAQPAVVGPADSLSPTVEGP
VAPVIPSPERRTTSPSRPRPAVTGAAYVDPSGKTERPAHGTTPPPAGPLR
VHSEEEGTGVHLAKRDSIGVCCAVPSCAVCGAGYLSGRDEENCGCVSVPA
PTPSPDGDIDTASGDAASCGGERDALGFLGNATSAPWTISSDGVESVASD
RGVCCAVPSCVLCDAAYLFGRDGDICRCVYGSTPTPASSREIDTYTSPEG
SALCGVGREVPGVSETPSMALSTGGDGGELAPPSPVATIAEPPSPVATVA
EPP
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mRNA from alignment at L-elsbetiae_contig6387:2438..5876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6387.15052.1 ID=mRNA_L-elsbetiae_contig6387.15052.1|Name=mRNA_L-elsbetiae_contig6387.15052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3439bp|location=Sequence derived from alignment at L-elsbetiae_contig6387:2438..5876- (Laminarionema elsbetiae ELsaHSoW15)
CAGCAACCGATCGTCTCCCGCGCGGGTGTGGACGTGACCATGAGCGCGAC
TGGTCCGCCGATCAGTTCACCATCATCGAGCTTCGACTGGCTGGACGAAG
GTAAAATGCAAATATCAAGTTACACTTTGACCACAAGCGTACAACAGTAC
ACCGGGATACAAGGCCTCCCTCCGGCTATTCATGTTGCCAGTATCTGTAT
GCTGCATATTTTACGTAGGCGTTGACACCCCCTTCCCTCACCCCCGCACA
TTAACGAAAGGCGCGCCTGGCATGGCTGTGGCCTTTCCTCCGGGAACCGA
CGAAGCTGCTTTCGTCGCGGGCTTCAAGCTCAACGTCGAGGGTGGCGCGG
ACATCGAGGCGAGCGCCGGCTTCAGTGCCTCCGGTAAGCTCTCCTTCGCT
GGTATCGATTCCGCTCCGCATGCATAGCCAAGCATTTTATTTTTGTGCTG
GTCGCGATGCACTCCGTAGCGCAACCCTCTTTCACTGTCTGCTCTCTTCC
CTCTCCGCCTCCGGCTTTGTATCTTGTCACCCCCGTTACATGCCTCGCCG
GTCGAATATTTCAGGTGTCGCCCCCGCCGATGGTGCTCAGCCTGCCGTGG
TTGGACCAGCAGACTCCCTTTCCCCTACGGTGGAGGGGCCGGTAGCACCG
GTTATCCCCTCGCCCGAGAGGCGCACCACCTCACCCTCGCGTCCGCGCCC
TGCCGTCACCGGGGCCGCGTACGTCGACCCTTCGGGGAAAACGGAGCGCC
CGGCACACGGCACCACGCCGCCTCCCGCTGGTCCGCTCCGCGTACACTCC
GAGGAAGAGGGTGAGCGTTGGGAGGGATTCAAGTTGCCTTTTCTTACGTA
CACGCTGTTTTTTTCTAGAAGGGAGGAGGGCTGCGGACGCCTGCCCGCCT
CTGCTGCTCGAGGAGTGTGTGTACGCGCATGACAGCAAAGCAGTGCGGCG
CTTTTTTTCCGTTTGCAGTTGCGGTTGAAAAAATCACGAGTGAATACGCA
AGACACCCCCCGCGAGACAGCAGTACGTATACGCCGTGCTCTGCCCAGCA
ACTTGGAGGTGAAAATGCGCTCATCCGCTCCTGTGATGCTGTTGAGGTGT
TTGTCCTCTCCATCTTTTCGCAGAAATTTCTCGTCGGGGTGTCTCGCAAG
TCCAAACCCAAGCAAGTCCGCACCGGTCTTTTTCTACGGTCTTTGAGGCA
AAATCTGCTCTGTGAAGTCCGAAAGATGTAAAGATCCTACGGACTTGGCA
GCTCGGGGTAAAAAAAAGACCGAAACCAAACCGAAATTCGCACTTCGCAA
ACACCCTATTTTCAGGCCTGTGGTAAAGGGGGCCCCGAAGCTGCTGTGCT
AGGGGTACAGGGGGGGAGATCCCCGTCACATCTAAGCTGTGCTGGTGTTG
GGGTTTGATGGAACACATGTTCCGGTCTGCATTCTTCCAGATTTGTATAT
AGCTATCGGGAAGGCAGGATGTTTTTAAACATTGACTTGGTTGTAGGGTC
AAAATACCCGATCGGATTCCACCCCGCCACAAAGCTCTCGCCAGACGCAA
CGCCCATCCACCGCCCGACTGACACGCCCAGAGGTATCACAACGGAGCAC
ACGCTCGAAGTGCTCAGATGGCGAATGGTGCCCCAGGGGCCGAGAACTGG
GTGGTGCTGATCTCTTGGACTGCTGACTGCTGAGTAATCACGTAATTGGT
GCCCAGTGTGGTTCTGGGGCCAATGCGCACCGTTTGACAAAATCCGATTT
GAATAATCCGATCGTACAATAAATGGCCTGAGAAACGGCCTAAAAAGCGA
AAAACAATCTTGCGCAAACTCTCAACATTTAACATCTACTGTAGCTACCA
TAGACATCAGCGTGACGCCTCCCTTCTCCGTTCTCTACAATACTCCCCGC
TGCTTGCCTGTGCGTGACTTACCGTTTGTATTGCGAAGGCACCGGTGTGC
ACTTGGCGAAAAGGGACAGCATAGGGGTCTGCTGCGCTGTTCCTTCGTGC
GCAGTTTGTGGCGCGGGCTACCTCTCCGGTAGAGACGAGGAGAACTGCGG
TTGCGTGTCTGTCCCTGCGCCGACTCCCTCCCCCGACGGCGACATCGACA
CGGCCTCCGGCGATGCTGCATCCTGCGGTGGTGAGCGTGACGCGCTGGGC
TTTCTGGGCAACGCGACCTCGGCGCCCTGGACCATCAGCAGTGACGGTGA
GACTAAACGAGGACGGAGACCAAAATAGCAAAATAGGGTACCACCTACGA
TGTCACGAAAGAAGAGTCGAACCCATGCACAGCGACGTAAGAGTCGGCAG
GGGTATTGAAGATGTCCCACCTTGACGATGCACGGCTCGAATGTCTTCTC
TTTGATTGTGTGACGTTGCAATTGGGTTGGCCTGTTGGTATGAGGGCAAG
GCATTTGGTTCGGGGAAACACCCGCACGAAACCCGATGGTGAACAGGGGG
AGAACATTTTTTTCGCGCGCGCGGCGTTTCAAATTGTGGCGCTTCTCCCG
GGCAAAGAGGCACGGTAGTTTCAAGATTCAAGATTGATATCTCACTTCCC
ACTCGCCATTTCCCCATCTTGCTTTGTGCGTACGCCACTCACCTTTTTTT
TTTGTCGCCAACGGACAGGTGTCGAGTCCGTTGCGAGCGACAGGGGCGTC
TGCTGCGCTGTTCCTTCGTGCGTGTTGTGCGATGCAGCGTACCTGTTCGG
CAGAGACGGTGATATATGCCGCTGCGTGTACGGGTCCACCCCTACGCCGG
CTTCCTCCCGCGAGATCGACACCTATACGTCACCTGAAGGTTCTGCGCTT
TGTGGTGTTGGGCGTGAGGTGCCGGGCGTCTCTGAGACACCTTCCATGGC
GCTCAGCACCGGTGGCGACGGTAAGATGTAGTCCGTGTTTGTCGTGCGTT
GCCCGTGTCCGACCTATCTACCCGCAGCCATTGTATTGACCGCGTCGTAT
TGCAAATGGGCAACTCTGCGTTTCGTGTCCTGCGAGTTCGAGACAGATCG
TCGTCCCTTGTGACTGACGTACTATTTTGGCTCAGCGGTGTATTTTAATG
ATGTAGGTACCACGTTTCCCGGCGTTGAAATCCCGGGTAGGGGGTGGATT
TTTCTCTCCAACTATCCTCTCTCACCGCCAAATCGATTTCTTTTTGCGCT
TTTACACAAGAACCGGCACCAAAATGGTTTCAAAGAAGCGGAATTCAGAA
CCGGTAATCTATTCCCAGAACTTCAAGTCAGCTGCTTCAAGTACGTTCGT
GTCCGTCTTGAAGTGCTGTGAAGGTGCTCGCCGAAACGGAACTCGACCAG
TTCAGTAACACGCGGTCGTGTTTTTTTTTTTTTTCATGTTGTCCGACATG
CTTGAGCAGGTGGCGAACTGGCGCCCCCCTCCCCCGTCGCTACCATTGCA
GAGCCCCCCTCCCCCGTCGCTACCGTTGCGGAGCCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6387:2438..5876-

>mRNA_L-elsbetiae_contig6387.15052.1 ID=mRNA_L-elsbetiae_contig6387.15052.1|Name=mRNA_L-elsbetiae_contig6387.15052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2118bp|location=Sequence derived from alignment at L-elsbetiae_contig6387:2438..5876- (Laminarionema elsbetiae ELsaHSoW15)
CAGCAACCGATCGTCTCCCGCGCGGGTGTGGACGTGACCATGAGCGCGAC
TGGTCCGCCGATCAGTTCACCATCATCGAGCTTCGACTGGCTGGACGAAG
CAGCAACCGATCGTCTCCCGCGCGGGTGTGGACGTGACCATGAGCGCGAC
TGGTCCGCCGATCAGTTCACCATCATCGAGCTTCGACTGGCTGGACGAAG
GCGCGCCTGGCATGGCTGTGGCCTTTCCTCCGGGAACCGACGAAGCTGCT
TTCGTCGCGGGCTTCAAGCTCAACGTCGAGGGTGGCGCGGACATCGAGGC
GAGCGCCGGCTTCAGTGCCTCCGGCGCGCCTGGCATGGCTGTGGCCTTTC
CTCCGGGAACCGACGAAGCTGCTTTCGTCGCGGGCTTCAAGCTCAACGTC
GAGGGTGGCGCGGACATCGAGGCGAGCGCCGGCTTCAGTGCCTCCGGTGT
CGCCCCCGCCGATGGTGCTCAGCCTGCCGTGGTTGGACCAGCAGACTCCC
TTTCCCCTACGGTGGAGGGGCCGGTAGCACCGGTTATCCCCTCGCCCGAG
AGGCGCACCACCTCACCCTCGCGTCCGCGCCCTGCCGTCACCGGGGCCGC
GTACGTCGACCCTTCGGGGAAAACGGAGCGCCCGGCACACGGCACCACGC
CGCCTCCCGCTGGTCCGCTCCGCGTACACTCCGAGGAAGAGGGTGTCGCC
CCCGCCGATGGTGCTCAGCCTGCCGTGGTTGGACCAGCAGACTCCCTTTC
CCCTACGGTGGAGGGGCCGGTAGCACCGGTTATCCCCTCGCCCGAGAGGC
GCACCACCTCACCCTCGCGTCCGCGCCCTGCCGTCACCGGGGCCGCGTAC
GTCGACCCTTCGGGGAAAACGGAGCGCCCGGCACACGGCACCACGCCGCC
TCCCGCTGGTCCGCTCCGCGTACACTCCGAGGAAGAGGGCACCGGTGTGC
ACTTGGCGAAAAGGGACAGCATAGGGGTCTGCTGCGCTGTTCCTTCGTGC
GCAGTTTGTGGCGCGGGCTACCTCTCCGGTAGAGACGAGGAGAACTGCGG
TTGCGTGTCTGTCCCTGCGCCGACTCCCTCCCCCGACGGCGACATCGACA
CGGCCTCCGGCGATGCTGCATCCTGCGGTGGTGAGCGTGACGCGCTGGGC
TTTCTGGGCAACGCGACCTCGGCGCCCTGGACCATCAGCAGTGACGGCAC
CGGTGTGCACTTGGCGAAAAGGGACAGCATAGGGGTCTGCTGCGCTGTTC
CTTCGTGCGCAGTTTGTGGCGCGGGCTACCTCTCCGGTAGAGACGAGGAG
AACTGCGGTTGCGTGTCTGTCCCTGCGCCGACTCCCTCCCCCGACGGCGA
CATCGACACGGCCTCCGGCGATGCTGCATCCTGCGGTGGTGAGCGTGACG
CGCTGGGCTTTCTGGGCAACGCGACCTCGGCGCCCTGGACCATCAGCAGT
GACGGTGTCGAGTCCGTTGCGAGCGACAGGGGCGTCTGCTGCGCTGTTCC
TTCGTGCGTGTTGTGCGATGCAGCGTACCTGTTCGGCAGAGACGGTGATA
TATGCCGCTGCGTGTACGGGTCCACCCCTACGCCGGCTTCCTCCCGCGAG
ATCGACACCTATACGTCACCTGAAGGTTCTGCGCTTTGTGGTGTTGGGCG
TGAGGTGCCGGGCGTCTCTGAGACACCTTCCATGGCGCTCAGCACCGGTG
GCGACGGTGTCGAGTCCGTTGCGAGCGACAGGGGCGTCTGCTGCGCTGTT
CCTTCGTGCGTGTTGTGCGATGCAGCGTACCTGTTCGGCAGAGACGGTGA
TATATGCCGCTGCGTGTACGGGTCCACCCCTACGCCGGCTTCCTCCCGCG
AGATCGACACCTATACGTCACCTGAAGGTTCTGCGCTTTGTGGTGTTGGG
CGTGAGGTGCCGGGCGTCTCTGAGACACCTTCCATGGCGCTCAGCACCGG
TGGCGACGGTGGCGAACTGGCGCCCCCCTCCCCCGTCGCTACCATTGCAG
AGCCCCCCTCCCCCGTCGCTACCGTTGCGGAGCCCCCCGTGGCGAACTGG
CGCCCCCCTCCCCCGTCGCTACCATTGCAGAGCCCCCCTCCCCCGTCGCT
ACCGTTGCGGAGCCCCCC
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