mRNA_L-elsbetiae_contig6384.15050.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6384.15050.1
Unique NamemRNA_L-elsbetiae_contig6384.15050.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6384.15050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6384contigL-elsbetiae_contig6384:9290..9758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size469
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816704.622438-CDS-L-elsbetiae_contig6384:9289..97481622816704.622438-CDS-L-elsbetiae_contig6384:9289..9748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6384 9290..9748 +
1691683753.0833588-CDS-L-elsbetiae_contig6384:9289..97481691683753.0833588-CDS-L-elsbetiae_contig6384:9289..9748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6384 9290..9748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816704.6375031-UTR-L-elsbetiae_contig6384:9748..97581622816704.6375031-UTR-L-elsbetiae_contig6384:9748..9758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6384 9749..9758 +
1691683753.0943887-UTR-L-elsbetiae_contig6384:9748..97581691683753.0943887-UTR-L-elsbetiae_contig6384:9748..9758Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6384 9749..9758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6384.15050.1prot_L-elsbetiae_contig6384.15050.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6384 9290..9748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6384.15050.1

>prot_L-elsbetiae_contig6384.15050.1 ID=prot_L-elsbetiae_contig6384.15050.1|Name=mRNA_L-elsbetiae_contig6384.15050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
LRHPTLARISKVKSVLAGGSSPLFATLSPSPPFPQAHERLCGAHLSHGRC
CRCHPNPSLYGFFFEKAGSLLFSVYRGVDGALLPETKHILSLRHVHHPVL
GMGTAELHLAANLAARWPLGATLVDASLPPHVHHPILGMITAVLHLAATL
AE*
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mRNA from alignment at L-elsbetiae_contig6384:9290..9758+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6384.15050.1 ID=mRNA_L-elsbetiae_contig6384.15050.1|Name=mRNA_L-elsbetiae_contig6384.15050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=469bp|location=Sequence derived from alignment at L-elsbetiae_contig6384:9290..9758+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGACATCCGACACTAGCGCGCATTTCGAAAGTCAAAAGCGTGTTGGC
CGGGGGAAGCTCACCTTTATTTGCCACTCTGTCTCCCTCTCCGCCCTTTC
CCCAAGCCCATGAACGGTTGTGCGGCGCCCACCTCAGCCATGGTCGTTGT
TGCCGCTGCCACCCCAATCCTTCCCTCTACGGCTTCTTCTTTGAAAAAGC
GGGGTCGCTTCTGTTTTCCGTCTACCGTGGCGTCGACGGAGCGCTTCTTC
CTGAGACTAAGCATATCTTGTCTCTTCGTCACGTTCACCATCCCGTCCTC
GGCATGGGCACTGCAGAACTCCACCTTGCCGCCAATCTTGCCGCGCGATG
GCCACTTGGGGCAACCTTGGTGGATGCATCCCTTCCTCCTCACGTTCACC
ATCCCATCCTCGGCATGATCACGGCAGTACTCCACCTTGCCGCCACCCTT
GCCGAATGACGGAAGTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6384:9290..9758+

>mRNA_L-elsbetiae_contig6384.15050.1 ID=mRNA_L-elsbetiae_contig6384.15050.1|Name=mRNA_L-elsbetiae_contig6384.15050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig6384:9290..9758+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGACATCCGACACTAGCGCGCATTTCGAAAGTCAAAAGCGTGTTGGC
CGGGGGAAGCTCACCTTTATTTGCCACTCTGTCTCCCTCTCCGCCCTTTC
CCCAAGCCCATGAACGGTTGTGCGGCGCCCACCTCAGCCATGGTCGTTGT
TGCCGCTGCCACCCCAATCCTTCCCTCTACGGCTTCTTCTTTGAAAAAGC
GGGGTCGCTTCTGTTTTCCGTCTACCGTGGCGTCGACGGAGCGCTTCTTC
CTGAGACTAAGCATATCTTGTCTCTTCGTCACGTTCACCATCCCGTCCTC
GGCATGGGCACTGCAGAACTCCACCTTGCCGCCAATCTTGCCGCGCGATG
GCCACTTGGGGCAACCTTGGTGGATGCATCCCTTCCTCCTCACGTTCACC
ATCCCATCCTCGGCATGATCACGGCAGTACTCCACCTTGCCGCCACCCTT
GCCGAATGACTCAGACATCCGACACTAGCGCGCATTTCGAAAGTCAAAAG
CGTGTTGGCCGGGGGAAGCTCACCTTTATTTGCCACTCTGTCTCCCTCTC
CGCCCTTTCCCCAAGCCCATGAACGGTTGTGCGGCGCCCACCTCAGCCAT
GGTCGTTGTTGCCGCTGCCACCCCAATCCTTCCCTCTACGGCTTCTTCTT
TGAAAAAGCGGGGTCGCTTCTGTTTTCCGTCTACCGTGGCGTCGACGGAG
CGCTTCTTCCTGAGACTAAGCATATCTTGTCTCTTCGTCACGTTCACCAT
CCCGTCCTCGGCATGGGCACTGCAGAACTCCACCTTGCCGCCAATCTTGC
CGCGCGATGGCCACTTGGGGCAACCTTGGTGGATGCATCCCTTCCTCCTC
ACGTTCACCATCCCATCCTCGGCATGATCACGGCAGTACTCCACCTTGCC
GCCACCCTTGCCGAATGA
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