mRNA_L-elsbetiae_contig6377.15039.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI) HSP 1 Score: 166 bits (420), Expect = 3.850e-45 Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 1 Query: 121 KKRTDWACSKCTTLNFARRDQCFGCGAAAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETAAKSGGGG 447 +KR DW CSKC+TLNFARRD+CFGCGAA G G + +++PTNVLRVS LRR TT EQVV ALK FAPVKDAHLAVHP T SLRAC+VEFQSVEHAQHTL+TA+ G GG Sbjct: 73 RKRADWECSKCSTLNFARRDRCFGCGAAMGKG-YRTTIPTNVLRVSGLRRSTTSEQVVLALKPFAPVKDAHLAVHPTTNASLRACHVEFQSVEHAQHTLDTASVEGDGG 180
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A7S2FQV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQV4_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 7.170e-7 Identity = 38/118 (32.20%), Postives = 54/118 (45.76%), Query Frame = 1 Query: 127 RTDWACSKCTTLNFARRDQCFGCGA----------------AAGGGGF--GSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETA 426 R+DW C C NFARR QCF CGA GGGG S++P+ +L + ++ + +A+A VK+ + +H +EF SVE+A H L TA Sbjct: 1 RSDWICIACKGQNFARRTQCFKCGAEKTADCELVGPNGFLGGPGGGGEEPASAVPSPILVAKHISPRSSDLSIADGCRAYAQVKEVRV-MHSYA-------LIEFYSVEYATHVLNTA 110
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A2R6XQU6_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XQU6_MARPO) HSP 1 Score: 57.0 bits (136), Expect = 1.340e-6 Identity = 35/116 (30.17%), Postives = 48/116 (41.38%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCGAA-----------------AGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETA 426 TDW C+ C +NFARR CF C +GG + PT+VL V L E + + +AP+KD L T S ++ + SVE A LE + Sbjct: 372 TDWMCTVCACVNFARRTLCFQCNEGRAEDAPAADLPASTAPVSGGRRASEAGPTHVLVVRGLDENVNEESLHYEFSKYAPIKDLRLVRDKFTHVSRGFAFIHYNSVEEATKALEAS 487
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A1U7ZUJ9_NELNU (SUPPRESSOR OF ABI3-5 isoform X1 n=4 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZUJ9_NELNU) HSP 1 Score: 56.6 bits (135), Expect = 1.810e-6 Identity = 40/115 (34.78%), Postives = 48/115 (41.74%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCGAA----AGGGGFGSSMP------------TNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETA 426 +DW C+ C +NFARR CF C A A GSS P T+VL V L E + + AP+KD L T S +V F SVE A LE A Sbjct: 405 SDWMCTMCGCVNFARRTSCFQCNEARADDAPAADVGSSNPATLGKKGPEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEAA 519
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: SUA_ARATH (SUPPRESSOR OF ABI3-5 n=10 Tax=Arabidopsis TaxID=3701 RepID=SUA_ARATH) HSP 1 Score: 56.2 bits (134), Expect = 2.450e-6 Identity = 37/117 (31.62%), Postives = 48/117 (41.03%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCGA---------------AAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLETAAKS 435 TDW C+ C +NFARR CF C +A G + PT+VL V L E + + AP+KD L T S +V F SVE A LE ++ Sbjct: 380 TDWICTICGCINFARRTSCFQCNEPKTKDSPSADVGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRT 496
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: R0FNE0_9BRAS (Uncharacterized protein n=9 Tax=Camelineae TaxID=980083 RepID=R0FNE0_9BRAS) HSP 1 Score: 55.8 bits (133), Expect = 3.210e-6 Identity = 37/112 (33.04%), Postives = 46/112 (41.07%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCGA---------------AAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 420 TDW C+ C +NFARR CF C +A G + PT+VL V L E + + AP+KD L T S +V F SVE A LE Sbjct: 101 TDWMCTICGCINFARRTSCFQCNEPKTKDSPAADVGLANSASGKRISETGPTHVLVVRGLDEDADEEMIRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFCSVEDATKALE 212
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A1D1YN58_9ARAE (RNA-binding protein 5 n=4 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YN58_9ARAE) HSP 1 Score: 55.1 bits (131), Expect = 6.180e-6 Identity = 36/112 (32.14%), Postives = 46/112 (41.07%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCGAAAGG---------------GGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 420 +DW C+ C +NFARR CF C A G G + PT+VL V L E + + AP+KD L T S +V F S+E A LE Sbjct: 386 SDWMCTICGCINFARRTSCFQCNEARTDDAPPADVSTSNPTPVGKKGEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSIEEATKALE 497
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A5B7AKD4_DAVIN (Putative RNA-binding protein 5-B isoform X1 (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AKD4_DAVIN) HSP 1 Score: 54.3 bits (129), Expect = 6.570e-6 Identity = 36/112 (32.14%), Postives = 46/112 (41.07%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCGAAAGG---------------GGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 420 +DW C+ C +NFARR CF C G G + PT+VL V L E + + AP+KD L T S +V F SVE A +LE Sbjct: 54 SDWMCTICGCVNFARRTSCFQCNEGRADDAPPADMTSSNPTPLGKKGEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKSLE 165
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: UPI001CC45291 (SUPPRESSOR OF ABI3-5 isoform X3 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC45291) HSP 1 Score: 54.3 bits (129), Expect = 1.140e-5 Identity = 38/114 (33.33%), Postives = 48/114 (42.11%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCG-----------------AAAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 420 +DW C+ C +NFARR CF C A+ G GF + PT+VL V L E + + AP+KD L T S +V F SVE A LE Sbjct: 394 SDWMCTICGCVNFARRTSCFQCNEPRTEDAPAADIALSNPASLGRKGFEAG-PTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALE 506
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Match: A0A3Q7HRI7_SOLLC (Uncharacterized protein n=40 Tax=Solanaceae TaxID=4070 RepID=A0A3Q7HRI7_SOLLC) HSP 1 Score: 54.3 bits (129), Expect = 1.140e-5 Identity = 36/112 (32.14%), Postives = 47/112 (41.96%), Query Frame = 1 Query: 130 TDWACSKCTTLNFARRDQCFGCGA---------------AAGGGGFGSSMPTNVLRVSRLRRGTTVEQVVHALKAFAPVKDAHLAVHPITGGSLRACYVEFQSVEHAQHTLE 420 +DW C+ C +NFARR CF C ++ G G + PT+VL V L E + + AP+KD L T S +V F SVE A LE Sbjct: 353 SDWMCTICGCVNFARRTSCFQCNEPRTDDAPPADMASSNSSSLGRRGEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEEASKALE 464 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6377.15039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6377.15039.1 >prot_L-elsbetiae_contig6377.15039.1 ID=prot_L-elsbetiae_contig6377.15039.1|Name=mRNA_L-elsbetiae_contig6377.15039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp GSGRGSFAAAAAAAAGSSSSRGPRSSRGPREPSPPPPGRQKKRTDWACSKback to top mRNA from alignment at L-elsbetiae_contig6377:1105..4040- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6377.15039.1 ID=mRNA_L-elsbetiae_contig6377.15039.1|Name=mRNA_L-elsbetiae_contig6377.15039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2936bp|location=Sequence derived from alignment at L-elsbetiae_contig6377:1105..4040- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6377:1105..4040- >mRNA_L-elsbetiae_contig6377.15039.1 ID=mRNA_L-elsbetiae_contig6377.15039.1|Name=mRNA_L-elsbetiae_contig6377.15039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig6377:1105..4040- (Laminarionema elsbetiae ELsaHSoW15)back to top |