mRNA_L-elsbetiae_contig6376.15038.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6376.15038.1
Unique NamemRNA_L-elsbetiae_contig6376.15038.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6376.15038.1 vs. uniprot
Match: D7FTZ3_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTZ3_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 9.540e-10
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 SRLGALLRRGAPSLNNLRSYRAGSGGGKNLEPK-EALADLALPALGISPPPELEDPPEGHPGYGDSRAG 204
            SRLGA+LRRGAPSLN+LR  R+GS       P+ E + DLA+PALGISP  EL+DPPE H  +   R G
Sbjct:  121 SRLGAMLRRGAPSLNHLR--RSGSKASSLSSPQAEEVGDLAIPALGISPRGELDDPPERHASHDSDRRG 187
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6376.15038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTZ3_ECTSI9.540e-1057.97EDR2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6376contigL-elsbetiae_contig6376:2402..3999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D7FTZ3
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28UHR@1,2R18H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.6037328-CDS-L-elsbetiae_contig6376:2401..28971622816703.6037328-CDS-L-elsbetiae_contig6376:2401..2897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6376 2402..2897 -
1691683752.3240325-CDS-L-elsbetiae_contig6376:2401..28971691683752.3240325-CDS-L-elsbetiae_contig6376:2401..2897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6376 2402..2897 -
1622816703.6164103-CDS-L-elsbetiae_contig6376:3937..39991622816703.6164103-CDS-L-elsbetiae_contig6376:3937..3999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6376 3938..3999 -
1691683752.3375561-CDS-L-elsbetiae_contig6376:3937..39991691683752.3375561-CDS-L-elsbetiae_contig6376:3937..3999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6376 3938..3999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6376.15038.1prot_L-elsbetiae_contig6376.15038.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6376 2402..3999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6376.15038.1

>prot_L-elsbetiae_contig6376.15038.1 ID=prot_L-elsbetiae_contig6376.15038.1|Name=mRNA_L-elsbetiae_contig6376.15038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=186bp
SRLGALLRRGAPSLNNLRSYRAGSGGGKNLEPKEALADLALPALGISPPP
ELEDPPEGHPGYGDSRAGGGAGGAEAGGTGGSSTSSSSGRRRFYKSKSSV
GGSSSSSSSRNVSGRDGRSGGGGGGRGKGTSLEDPLDSSGGGGGGGGSME
GLRRASSGSKSARKESGKTLELDYDEQVAFWSGSEL
back to top

mRNA from alignment at L-elsbetiae_contig6376:2402..3999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6376.15038.1 ID=mRNA_L-elsbetiae_contig6376.15038.1|Name=mRNA_L-elsbetiae_contig6376.15038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1598bp|location=Sequence derived from alignment at L-elsbetiae_contig6376:2402..3999- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGCTGGGGGCGCTGCTCAGGAGGGGTGCGCCCAGCTTGAACAACCT
TCGCTCGTACAGGTACACAACTACTCTGCTGCTGTAGAGGTTATTCGAGC
CTGTGTCGTGTGGATGTACTGGGTATTACCGTCTAGACCTCTTATGTATT
ATGCGACCCTATTTACTTTGCATGCGTGTGTATGTACATACCGTAGGTGG
CACAAGATACCACACCCCCTGGGCAGATTTTCAAAGCTCGATTCTTCCCC
AGCAAGCATAATGCCTGTGCTGAAAGGGGTGGCTTTTGGAAAGATCTAGT
CGAGGGCTGTCCGAAAATGTGCCGTTTGGTGCTGGCATCCTCTTTTTTGT
GGAGTAATGGAGCTCTAAAAACCGGTCCAGGGGGTGTGGTATCTTGTGTC
ACTACGGTACATTTTTAGAGGACAGCAGGCAGTGCTTCGGTCTGTTTTGG
TTTTGTTTTGTTTTGAAAGATTAAGCAGATAATCAAAAATGGAACCTAAC
CCACATTGGAGACGGGACTCCCGTGGTGTTTTTGGTTTTTTTTTTGTTTT
GTTTTATTATAAGGGCGGACGAGGAGTTTTTTTTTTTTTTTTTGGCAAGA
ACCGGAGAGAGAGGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAAGGGGACGACTGTAAACGCGACCGCCGTTGCTTTCTTCACTACACA
TGTACCTGTGGCCTTCTTCCTGCGCTCACGCACCCCAGCCGCTGGGGCCG
GCCGACTTTTTACTTGTTTGTGGCCGTCCCTTTTTTGATAAGGGCCGCGT
GGCCGCGTGGCGGCGATGGCGATGGTGGTGGCCAGCAGGTGTTTTGGAAA
AAAGAAAAAAGAGACTTCCGTGCCCCGATGCTGTGCTTGTTGTTCAATGA
ATGTTACACAAATGTCAGCAGTCTACATACGTCCATCTGCGAAGAAGTCG
TTCCGGAGGGACTATTGTTGTTAGGCATACTAACCCCCCTGTTTCCCCAT
CCAAGATAAACTCGCACACAAATATCCGTACATAGTTCAATTAAAAACGA
GTATTGTTTTTGTGTTTTTTCGTCGCGGTGTCTGGTTTTTGTCTCCCTAA
AGGGCCGGGTCGGGAGGAGGCAAGAATCTCGAGCCCAAGGAGGCTTTAGC
CGACCTCGCCCTGCCCGCTCTCGGGATCTCGCCCCCCCCCGAGCTGGAGG
ATCCCCCCGAGGGCCACCCCGGCTACGGCGACAGCAGGGCGGGAGGGGGA
GCAGGTGGTGCCGAGGCCGGCGGTACTGGCGGCAGCAGCACGTCTAGCTC
GTCCGGCCGGCGGCGGTTCTACAAGAGCAAGAGCTCGGTGGGTGGTAGCA
GCAGCAGCAGCAGCAGCCGAAACGTCTCCGGCCGCGATGGTCGTAGCGGG
GGTGGCGGTGGTGGCCGAGGAAAAGGTACTTCTCTCGAAGACCCGCTGGA
CAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCTCCATGGAAGGGCTCAGGA
GGGCTTCTTCTGGTTCCAAGTCCGCCCGAAAGGAAAGCGGTAAGACGTTG
GAGCTCGACTACGACGAACAGGTGGCCTTCTGGTCCGGTTCGGAGCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6376:2402..3999-

>mRNA_L-elsbetiae_contig6376.15038.1 ID=mRNA_L-elsbetiae_contig6376.15038.1|Name=mRNA_L-elsbetiae_contig6376.15038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig6376:2402..3999- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGCTGGGGGCGCTGCTCAGGAGGGGTGCGCCCAGCTTGAACAACCT
TCGCTCGTACAGAGCAGGCTGGGGGCGCTGCTCAGGAGGGGTGCGCCCAG
CTTGAACAACCTTCGCTCGTACAGGGCCGGGTCGGGAGGAGGCAAGAATC
TCGAGCCCAAGGAGGCTTTAGCCGACCTCGCCCTGCCCGCTCTCGGGATC
TCGCCCCCCCCCGAGCTGGAGGATCCCCCCGAGGGCCACCCCGGCTACGG
CGACAGCAGGGCGGGAGGGGGAGCAGGTGGTGCCGAGGCCGGCGGTACTG
GCGGCAGCAGCACGTCTAGCTCGTCCGGCCGGCGGCGGTTCTACAAGAGC
AAGAGCTCGGTGGGTGGTAGCAGCAGCAGCAGCAGCAGCCGAAACGTCTC
CGGCCGCGATGGTCGTAGCGGGGGTGGCGGTGGTGGCCGAGGAAAAGGTA
CTTCTCTCGAAGACCCGCTGGACAGCAGCGGCGGCGGCGGCGGCGGCGGC
GGCTCCATGGAAGGGCTCAGGAGGGCTTCTTCTGGTTCCAAGTCCGCCCG
AAAGGAAAGCGGTAAGACGTTGGAGCTCGACTACGACGAACAGGTGGCCT
TCTGGTCCGGTTCGGAGCTCGGCCGGGTCGGGAGGAGGCAAGAATCTCGA
GCCCAAGGAGGCTTTAGCCGACCTCGCCCTGCCCGCTCTCGGGATCTCGC
CCCCCCCCGAGCTGGAGGATCCCCCCGAGGGCCACCCCGGCTACGGCGAC
AGCAGGGCGGGAGGGGGAGCAGGTGGTGCCGAGGCCGGCGGTACTGGCGG
CAGCAGCACGTCTAGCTCGTCCGGCCGGCGGCGGTTCTACAAGAGCAAGA
GCTCGGTGGGTGGTAGCAGCAGCAGCAGCAGCAGCCGAAACGTCTCCGGC
CGCGATGGTCGTAGCGGGGGTGGCGGTGGTGGCCGAGGAAAAGGTACTTC
TCTCGAAGACCCGCTGGACAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCT
CCATGGAAGGGCTCAGGAGGGCTTCTTCTGGTTCCAAGTCCGCCCGAAAG
GAAAGCGGTAAGACGTTGGAGCTCGACTACGACGAACAGGTGGCCTTCTG
GTCCGGTTCGGAGCTC
back to top