mRNA_L-elsbetiae_contig6370.15032.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6370.15032.1
Unique NamemRNA_L-elsbetiae_contig6370.15032.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6370.15032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6370contigL-elsbetiae_contig6370:3012..3683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.1773005-CDS-L-elsbetiae_contig6370:3012..30931622816703.1773005-CDS-L-elsbetiae_contig6370:3012..3093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6370 3013..3093 -
1691683752.0201342-CDS-L-elsbetiae_contig6370:3012..30931691683752.0201342-CDS-L-elsbetiae_contig6370:3012..3093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6370 3013..3093 -
1622816703.18954-CDS-L-elsbetiae_contig6370:3422..36831622816703.18954-CDS-L-elsbetiae_contig6370:3422..3683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6370 3423..3683 -
1691683752.0318959-CDS-L-elsbetiae_contig6370:3422..36831691683752.0318959-CDS-L-elsbetiae_contig6370:3422..3683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6370 3423..3683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6370.15032.1prot_L-elsbetiae_contig6370.15032.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6370 3013..3683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6370.15032.1

>prot_L-elsbetiae_contig6370.15032.1 ID=prot_L-elsbetiae_contig6370.15032.1|Name=mRNA_L-elsbetiae_contig6370.15032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
APRIDGADAHHGGGDQPFEGIGDVAVADVAVSNIADVDVGNPVAAGRPAA
DALDHGDIFFKAGVRGLGCNEKVGWDTFFETDERQHEDGLSRRYPVFAVF
VDTALRWGGAGVLL
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mRNA from alignment at L-elsbetiae_contig6370:3012..3683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6370.15032.1 ID=mRNA_L-elsbetiae_contig6370.15032.1|Name=mRNA_L-elsbetiae_contig6370.15032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig6370:3012..3683- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCTAGGATCGACGGAGCTGATGCCCATCACGGCGGCGGAGACCAACC
CTTCGAGGGCATCGGCGATGTCGCTGTCGCTGATGTTGCTGTGAGTAATA
TCGCTGATGTCGACGTCGGCAATCCAGTCGCGGCCGGGAGGCCAGCTGCT
GATGCCCTGGATCATGGGGACATTTTCTTCAAAGCTGGCGTCAGGGGGCT
GGGGTGCAACGAGAAGGTCGGCTGGGACACCTTCTTCGAGACCGACGAGC
GGCAGCACGAGGTATGCGGTCTTCCCATTGGATGGTTGGTTGGCTGGAGG
AGGAATGCCAAATTTTAGTTTTTGATGTATTCAGTCGTATTTCCCGGCTG
TTTCCTGGCCCTCTTACCCCCGCCACATCCTGCCCCGTCCCGTCTAGAGT
TTGAAGGCTCTCAAACGCCGCGTCAAACCCGCCTGCTCCGCTGTGCACCG
GCGATCCGTACCGGCGTTGTGATTCACGCTGGCATTCGAGGTCTCGAGTT
TTTTTTTTGTCTCTAAACCTTCCCGATGTCGATCCTCCTGTTCTGTTTTG
GCTCGTTCGTGTCCCTGCGATCGCTGTGCTGTATTTCCAGGATGGCCTTT
CACGGCGGTATCCTGTCTTCGCTGTTTTCGTGGATACTGCTCTCCGCTGG
GGTGGGGCGGGCGTTTTGCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6370:3012..3683-

>mRNA_L-elsbetiae_contig6370.15032.1 ID=mRNA_L-elsbetiae_contig6370.15032.1|Name=mRNA_L-elsbetiae_contig6370.15032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig6370:3012..3683- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCTAGGATCGACGGAGCTGATGCCCATCACGGCGGCGGAGACCAACC
CTTCGAGGGCATCGGCGATGTCGCTGTCGCTGATGTTGCTGTGAGTAATA
TCGCTGATGTCGACGTCGGCAATCCAGTCGCGGCCGGGAGGCCAGCTGCT
GATGCCCTGGATCATGGGGACATTTTCTTCAAAGCTGGCGTCAGGGGGCT
GGGGTGCAACGAGAAGGTCGGCTGGGACACCTTCTTCGAGACCGACGAGC
GGCAGCACGAGGCGCCTAGGATCGACGGAGCTGATGCCCATCACGGCGGC
GGAGACCAACCCTTCGAGGGCATCGGCGATGTCGCTGTCGCTGATGTTGC
TGTGAGTAATATCGCTGATGTCGACGTCGGCAATCCAGTCGCGGCCGGGA
GGCCAGCTGCTGATGCCCTGGATCATGGGGACATTTTCTTCAAAGCTGGC
GTCAGGGGGCTGGGGTGCAACGAGAAGGTCGGCTGGGACACCTTCTTCGA
GACCGACGAGCGGCAGCACGAGGATGGCCTTTCACGGCGGTATCCTGTCT
TCGCTGTTTTCGTGGATACTGCTCTCCGCTGGGGTGGGGCGGGCGTTTTG
CTGGATGGCCTTTCACGGCGGTATCCTGTCTTCGCTGTTTTCGTGGATAC
TGCTCTCCGCTGGGGTGGGGCGGGCGTTTTGCTG
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