mRNA_L-elsbetiae_contig6368.15028.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6368.15028.1
Unique NamemRNA_L-elsbetiae_contig6368.15028.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A6H5KLT5_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLT5_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 2.590e-101
Identity = 184/363 (50.69%), Postives = 210/363 (57.85%), Query Frame = 1
Query:    1 GQEPRARFIKKAACAAASITGLVVAAPRLMGGNSEVVAPVLAEETAGGMASVAPALAEEGITSKFDYIKFDVQLSEGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK---GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTSTVPRPADGDF 1080
            G +PR RFI KAACAAAS+TGL VAAP ++G +S      +A ETA  +A VAPALAEE + SK  Y+KFDVQLS+ ESGSF+VEVRPDWAPLGA RF  LSKAGFF  CRFFRVL+GF+AQFGINGDP VQAKY GA ++DDPVTQSNKRGTVVFATSGK+SRTTQ                                                                                                                 LF+N+ DN FLDKSGFSPIG+   GM+VAD LY+GYGEGAPQGNGPNQGKIQ  GNAYL+ SF KLSYIKS ++VPRPA+GD+
Sbjct:   34 GTQPRGRFIAKAACAAASLTGLAVAAPFIVGSDSADGVAAVAAETARNVA-VAPALAEEALGSKPSYVKFDVQLSDEESGSFVVEVRPDWAPLGAARFTLLSKAGFFEDCRFFRVLKGFVAQFGINGDPAVQAKYRGAVMQDDPVTQSNKRGTVVFATSGKNSRTTQ-----------------------------------------------------------------------------------------------------------------LFINFGDNTFLDKSGFSPIGRVVVGMDVADRLYKGYGEGAPQGNGPNQGKIQSQGNAYLKGSFPKLSYIKSATSVPRPAEGDY 282          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A7S3YYD7_9EUKA (Peptidylprolyl isomerase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYD7_9EUKA)

HSP 1 Score: 181 bits (459), Expect = 1.020e-50
Identity = 121/331 (36.56%), Postives = 157/331 (47.43%), Query Frame = 1
Query:   88 MGGNSEVVAP---VLAEETAGGMASVA-PALAEEGITSKFDYIKFDVQLSEGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK----GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTSTV 1056
            +GG+S VV+     +      G+A+VA  A AEEG    F+ ++F+VQL+  ++  F++EV P+WAPLGA++F  L   GF+  CRFFRV++GF+ Q+GINGDP V  KY    I+DDPV  SNKRGT+ FATSGK+SRTTQ                                                                                                                 LF+N+ DN FLD+ GFSPIGK    GM V DS+Y  YGEGAP G+GP+QG+IQR GNAYLEK++ KLSYIK+    
Sbjct:  110 LGGDSPVVSRRDVAVGVPVGAGLAAVAGKAKAEEGSGGVFN-VEFEVQLTADKTDKFVIEVHPEWAPLGAEQFKKLVTDGFYNDCRFFRVVEGFVVQWGINGDPDVNKKYKKP-IQDDPVKTSNKRGTLTFATSGKNSRTTQ-----------------------------------------------------------------------------------------------------------------LFINFGDNTFLDRLGFSPIGKVAGDGMKVVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTAKVA 325          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A7S2CBJ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBJ7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.530e-49
Identity = 113/308 (36.69%), Postives = 139/308 (45.13%), Query Frame = 1
Query:  136 AGGMASVAPALAEEGITSKFDYIKFDVQLSEGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIG---KGMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTS 1050
            AG +A  +PA AE      FD + FD+   +G  G+ ++EV P+WAPLGA+RF  L   G F   RFFRVL GFIAQFGI+GDP V AK+ G  ++DDPV  SNKRGT+ FAT G ++RT+Q                                                                                                                 +F NY DN FLD+ GFSP G    GM++ + LY GYGEGAP G GPNQGKIQ+DGNAYL++SF KLSYIK  S
Sbjct:   77 AGALALSSPARAE---AETFD-VTFDIVNEDGTGGAVVIEVHPEWAPLGAERFKELVSTGTFDENRFFRVLPGFIAQFGISGDPAVSAKWRGQNLRDDPVKVSNKRGTLTFATGGPNTRTSQ-----------------------------------------------------------------------------------------------------------------IFFNYGDNQFLDRQGFSPFGTVKSGMDIVEKLYSGYGEGAPSGKGPNQGKIQKDGNAYLKESFPKLSYIKKAS 267          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A7S2TLE1_9EUKA (Peptidylprolyl isomerase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TLE1_9EUKA)

HSP 1 Score: 176 bits (446), Expect = 6.750e-49
Identity = 113/306 (36.93%), Postives = 148/306 (48.37%), Query Frame = 1
Query:  142 GMASVAPAL-AEEGITSKFDYIKFDVQLSEGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK----GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKS 1044
            G+A+VA  + AEEG    F+ ++F+VQL+  ++  F++EV P+WAP GA++F  L   GF+  CRFFRV++GF+ Q+GINGDP V  KY  A I+DDPV  SN+RGT+ FATSGK+SRTTQ                                                                                                                 LF+N+ DN FLD+ GFSPIGK    GM + DS+Y  YGEGAP G+GP+QG+IQR GNAYLEK++ KLSYIK+
Sbjct:  122 GLAAVAGKVKAEEGSGGIFN-VEFEVQLTADKTDKFVIEVHPEWAPHGAEQFKKLVNDGFYDDCRFFRVVEGFVVQWGINGDPEVNKKYKKA-IQDDPVKTSNERGTLTFATSGKNSRTTQ-----------------------------------------------------------------------------------------------------------------LFINFGDNTFLDRLGFSPIGKVVGDGMKIVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKT 312          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A7S3YYN4_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYN4_9EUKA)

HSP 1 Score: 171 bits (432), Expect = 1.570e-48
Identity = 106/291 (36.43%), Postives = 133/291 (45.70%), Query Frame = 1
Query:  196 DYIKFDVQLSEGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK----GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTSTV 1056
            D  +  VQL+  ++  F++EV P+WAPLGA++F  L   GF+  CRFFRV++GF+ Q+GINGDP V  KY    I+DDPV  SNKRGT+ FATSGK+SRTTQ                                                                                                                 LF+N+ DN FLD+ GFSPIGK    GM V DS+Y  YGEGAP G+GP+QG+IQR GNAYLEK++ KLSYIK+    
Sbjct:    4 DVKQHQVQLTADKTDKFVIEVHPEWAPLGAEQFKKLVTDGFYNDCRFFRVVEGFVVQWGINGDPDVNKKYKKP-IQDDPVKTSNKRGTLTFATSGKNSRTTQ-----------------------------------------------------------------------------------------------------------------LFINFGDNTFLDRLGFSPIGKVAGDGMKVVDSIYDRYGEGAPNGSGPDQGRIQRSGNAYLEKNYPKLSYIKTAKVA 180          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A7S2RJE7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJE7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.890e-48
Identity = 111/303 (36.63%), Postives = 138/303 (45.54%), Query Frame = 1
Query:  157 APALAEEGITSKFDYIKFDVQLSEGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK---GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTSTV 1056
            AP LAE+   + FD + F VQLS  E G   ++V PDW+P GAQRF  L +AGF+  CRFFRVL GF+AQFGINGDP V +++ G  ++DDPVT +N RGT+ FAT G +SRTTQ                                                                                                                 +F+N+ DN FLD+SGFSP  +   GM++ + LY GYGEGAP GNGPNQG IQ  GNAYL  S+ KLS+IKS   V
Sbjct:   97 APGLAEDA-AAPFDVL-FTVQLSPEEEGQVGLKVHPDWSPRGAQRFRELVEAGFYNDCRFFRVLPGFVAQFGINGDPAVMSQWRGRNLRDDPVTVTNSRGTLSFATGGPNSRTTQ-----------------------------------------------------------------------------------------------------------------VFINFKDNKFLDRSGFSPFAEVTSGMDIVEKLYSGYGEGAPNGNGPNQGLIQSKGNAYLSASYPKLSFIKSAKVV 284          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A835YRY8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 3.580e-48
Identity = 111/310 (35.81%), Postives = 143/310 (46.13%), Query Frame = 1
Query:  139 GGMASVAPALAEEGITSKFD-YIKFDVQLSEGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK---GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTSTV 1056
            G  A V  A A +G  ++ D  ++F V+L+ G+ G+F+++V PDWAP GA RF  L  + FF   RFFRVL+GF+AQFGI+GDP V AK+  + I+DDPVTQSNKRGTVVFAT+G ++RT+Q                                                                                                                 LF+N+ DNAFLDK GFSPIG+   GM+  DSLY  YGEGAP+G GP+Q  IQ  GNAYL+  F  LSYI +   +
Sbjct:   57 GAAAGVGVAAAPKGAFAEGDPKVQFQVELAPGKQGTFVMQVHPDWAPKGAARFLELVDSDFFTDVRFFRVLKGFVAQFGISGDPQVSAKWRASAIRDDPVTQSNKRGTVVFATAGANTRTSQ-----------------------------------------------------------------------------------------------------------------LFINFGDNAFLDKMGFSPIGEIVEGMDTVDSLYADYGEGAPRGKGPDQNAIQSRGNAYLKDKFPNLSYITNAKRI 253          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A7S1GJ23_CYCTE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJ23_CYCTE)

HSP 1 Score: 158 bits (399), Expect = 1.510e-43
Identity = 100/280 (35.71%), Postives = 123/280 (43.93%), Query Frame = 1
Query:  226 EGESGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYAD--NAFLDKSGFSPIGK---GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTS 1050
            EG SG   +E++PDWAP G +RF  L+   F+ GCRFFRVL GFIAQFGINGDP +Q+++ GA I DDPVT SN RGTVVFAT+G+++RT+Q                                                                                                                 +F+N  +  N FLD+ GFSPIGK   GM++ D LY GYGEGAP G GPNQ  IQ  GN YL  S+ KLSYI   +
Sbjct:   17 EGNSGVIQIELKPDWAPRGVERFEDLTSQSFWDGCRFFRVLPGFIAQFGINGDPNIQSRWRGANIPDDPVTVSNTRGTVVFATAGRNTRTSQ-----------------------------------------------------------------------------------------------------------------IFINTREQGNGFLDRQGFSPIGKVIQGMDIVDRLYAGYGEGAPSGKGPNQALIQLKGNDYLTSSYPKLSYISKAT 183          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A6U4F362_9STRA (Peptidylprolyl isomerase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4F362_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.240e-42
Identity = 110/289 (38.06%), Postives = 128/289 (44.29%), Query Frame = 1
Query:  202 IKFDVQLSEGE-SGSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK---GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTSTV 1056
            IKF+V+  +G  SGSF +  RPDWAP G QRF TL++  F+ GCR FRVL GFIAQFGINGDP VQ+K+  + I DDPV  +N RGTVVFAT+G ++RTTQ                                                      +F  T                                                         N   N FLDK GFSPI +   GM+V D LY GYGEGAPQG GPNQG IQ  GN YLE S+ KLSY  S   V
Sbjct:   93 IKFEVENLDGTGSGSFTLRTRPDWAPNGVQRFETLTENKFWDGCRVFRVLPGFIAQFGINGDPQVQSKW-RSNIPDDPVKVTNSRGTVVFATAGPNTRTTQ------------------------------------------------------IFINT---------------------------------------------------------NPKGNGFLDKQGFSPIAEVVEGMDVVDKLYAGYGEGAPQGRGPNQGLIQAKGNEYLEPSYPKLSYFSSAKFV 269          
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Match: A0A1F9Z9Q9_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusimicrobia bacterium RIFOXYB2_FULL_62_6 TaxID=1797970 RepID=A0A1F9Z9Q9_9BACT)

HSP 1 Score: 155 bits (393), Expect = 1.370e-42
Identity = 98/276 (35.51%), Postives = 120/276 (43.48%), Query Frame = 1
Query:  238 GSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDPTVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*YLCFMCAHACWRFFFNLAMGFSSRR*TYGVPTFVCTYIDAYVWPLNLIPPLFCRTTYLLPTSTRFRARRFFAYLP*ERLLRERAEQFGAPLTPPIRSATPTPNLPLAPQLFVNYADNAFLDKSGFSPIGK---GMNVADSLYRGYGEGAPQGNGPNQGKIQRDGNAYLEKSFSKLSYIKSTSTV 1056
            G F VEV  DWAPLGA RF  L KAG+F    FFRV+ GF+ QFGI+GDP V AK+  ARI+DDPV QSN +G + +A +G D+RTTQ                                                                                                                 LF+N+ +NAFLD  GF P GK   GM+V DSLY GYGEGAP+G GP+QG+IQ +GNAYL+K F K+ YI S   +
Sbjct:   27 GDFTVEVYKDWAPLGADRFYNLVKAGYFTDIAFFRVVSGFMVQFGIHGDPAVSAKWREARIQDDPVKQSNAKGNLTYAMAGPDTRTTQ-----------------------------------------------------------------------------------------------------------------LFINFGNNAFLDSQGFPPFGKVTEGMSVVDSLYSGYGEGAPRGMGPDQGRIQMEGNAYLKKDFPKMDYILSAEVL 189          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6368.15028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLT5_9PHAE2.590e-10150.69Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S3YYD7_9EUKA1.020e-5036.56Peptidylprolyl isomerase n=1 Tax=Lotharella globos... [more]
A0A7S2CBJ7_9STRA2.530e-4936.69Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A7S2TLE1_9EUKA6.750e-4936.93Peptidylprolyl isomerase n=1 Tax=Lotharella oceani... [more]
A0A7S3YYN4_9EUKA1.570e-4836.43Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lothar... [more]
A0A7S2RJE7_9STRA2.890e-4836.63Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizoc... [more]
A0A835YRY8_9STRA3.580e-4835.81Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S1GJ23_CYCTE1.510e-4335.71Peptidyl-prolyl cis-trans isomerase n=1 Tax=Cyclop... [more]
A0A6U4F362_9STRA1.240e-4238.06Peptidylprolyl isomerase n=1 Tax=Minutocellus poly... [more]
A0A1F9Z9Q9_9BACT1.370e-4235.51Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6368contigL-elsbetiae_contig6368:989..3236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.8e-46
Seed eggNOG ortholog2880.D8LSI0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
EggNOG OGs2S3DM@2759,COG0652@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase, cyclophilin type
Ec32 orthologEc-09_001710.1
Exons3
Model size1080
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6368.15028.1prot_L-elsbetiae_contig6368.15028.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6368 1076..2266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.7404563-UTR-L-elsbetiae_contig6368:988..10751622816702.7404563-UTR-L-elsbetiae_contig6368:988..1075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6368 989..1075 +
1691683751.654647-UTR-L-elsbetiae_contig6368:988..10751691683751.654647-UTR-L-elsbetiae_contig6368:988..1075Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6368 989..1075 +
1622816702.7762463-UTR-L-elsbetiae_contig6368:2266..26561622816702.7762463-UTR-L-elsbetiae_contig6368:2266..2656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6368 2267..2656 +
1691683751.7012885-UTR-L-elsbetiae_contig6368:2266..26561691683751.7012885-UTR-L-elsbetiae_contig6368:2266..2656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6368 2267..2656 +
1622816702.7871907-UTR-L-elsbetiae_contig6368:3059..32361622816702.7871907-UTR-L-elsbetiae_contig6368:3059..3236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6368 3060..3236 +
1691683751.7140255-UTR-L-elsbetiae_contig6368:3059..32361691683751.7140255-UTR-L-elsbetiae_contig6368:3059..3236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6368 3060..3236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.752044-CDS-L-elsbetiae_contig6368:1075..13541622816702.752044-CDS-L-elsbetiae_contig6368:1075..1354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6368 1076..1354 +
1691683751.6675243-CDS-L-elsbetiae_contig6368:1075..13541691683751.6675243-CDS-L-elsbetiae_contig6368:1075..1354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6368 1076..1354 +
1622816702.7636046-CDS-L-elsbetiae_contig6368:2119..22661622816702.7636046-CDS-L-elsbetiae_contig6368:2119..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6368 2120..2266 +
1691683751.6807754-CDS-L-elsbetiae_contig6368:2119..22661691683751.6807754-CDS-L-elsbetiae_contig6368:2119..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6368 2120..2266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6368.15028.1

>prot_L-elsbetiae_contig6368.15028.1 ID=prot_L-elsbetiae_contig6368.15028.1|Name=mRNA_L-elsbetiae_contig6368.15028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MGGNSEVVAPVLAEETAGGMASVAPALAEEGITSKFDYIKFDVQLSEGES
GSFIVEVRPDWAPLGAQRFNTLSKAGFFAGCRFFRVLQGFIAQFGINGDP
TVQAKYVGARIKDDPVTQSNKRGTVVFATSGKDSRTTQASW*
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mRNA from alignment at L-elsbetiae_contig6368:989..3236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6368.15028.1 ID=mRNA_L-elsbetiae_contig6368.15028.1|Name=mRNA_L-elsbetiae_contig6368.15028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2248bp|location=Sequence derived from alignment at L-elsbetiae_contig6368:989..3236+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAAGAGCCGAGGGCGCGATTTATCAAGAAGGCGGCGTGTGCGGCAGC CTCGATTACGGGCCTGGTGGTAGCGGCCCCGCGTCTCATGGGAGGCAACA GCGAGGTAGTAGCCCCCGTTCTCGCAGAGGAAACAGCCGGAGGCATGGCT TCTGTTGCCCCCGCTCTCGCCGAGGAGGGGATAACGAGCAAGTTCGACTA CATCAAGTTTGACGTCCAGCTTTCGGAGGGGGAGTCCGGCTCGTTCATCG TGGAGGTCAGGCCGGATTGGGCGCCCCTTGGCGCCCAGCGTTTCAATACC CTGTCAAAGGCGGGGTTCTTCGCGGGCTGTCGCTTCTTTCGCGTGCTCCA GGGCTTCATCGCGCAGGTGAGAAAAAATACAAATCAGTATGTAATGGTCG GCTGAACCCTTCTCGCGACGAAAATCTTAGGCAAGCACCGCAGACGGGGG AAGTGGGGGCCTTGGGGAAAGAAACCCTTCTGTGCGACCACGGTTCAGTA CTCTAGCAAGATGTCCTCATGACAAGGAGTCCATCGAGCACTGAAAATAA ATGTGATGAAGGAGAAAAAAAAAAAGGCATGTAGCGTGGATCGGGAATTT TTGCCTCGATCTCCGTTCTTCGAGACACCCGAAAACCAGGAGCACAATTG GGTCCGTTCTTGTTTTGTTTTATTTTGTTTTCGGCGCGGGACACTCTTAA GGTGGACCGCTCTTTTCTGCAAGTTAAATGTTTGCAATGAGAGTCAATTG GTCGATTTGGAACTTGGTGTGGCCTACAGATGACTTGATCTCTGGAAGGA GCATGCTGGTTAACTCGGCTGGCGATGCACTCGTCTTCCGTTTATGTGTC GGTAAACTTCCAACTACGAGCAGGACTGTGAAAACGCCCGGTGTTGTGCT GCGCTCGCGAATGTTCAAGCTTTGCCTTATGACGCTCTCTCGTTCTTTCT CTCTCTCTGTCTCTCTCTCTCCCCCTCTTGTGTTGGGAAACAAAGATGGT CAACTGGCAAACGGCCGGTTTGTACGTTGCGGAGCCTCGAAACTGCCATC TGAGAAGAACAGACCCGGGCTTTCCCTATTTTTTGAACTTTTTTCCTTCC TGGTCGTTTTGACGTTTCGCAATGCCAACAGTTCGGGATAAACGGAGACC CGACCGTGCAGGCCAAGTACGTCGGCGCGAGGATTAAAGACGATCCGGTC ACGCAGTCCAACAAGCGCGGCACCGTGGTTTTCGCCACTTCGGGCAAGGA CTCGCGGACAACCCAGGCGAGTTGGTAGTATTTGTGTTTTATGTGTGCGC ACGCTTGCTGGCGTTTCTTTTTCAATCTAGCGATGGGATTTTCAAGCAGG CGATGAACGTACGGGGTGCCGACGTTCGTTTGTACATACATCGATGCATA CGTATGGCCGTTGAATCTAATCCCGCCGCTGTTTTGTAGGACTACATACC TATTGCCAACGTCAACGCGATTCCGCGCGCGCCGTTTTTTCGCCTATCTA CCCTAAGAACGCCTCCTTCGCGAGCGCGCCGAGCAATTCGGGGCGCCTTT GACCCCACCGATCCGTTCCGCAACGCCAACGCCGAACCTCCCCCTTGCCC CGCAGCTCTTCGTCAACTACGCCGACAACGCCTTCCTCGACAAGTCCGGC TTTTCGCCAATCGGCAAGGTGAGCAAGCAAGCGCGCCCCGTCGATTGCGA TTGCTCGAACGAGTATTTACTCCATGGTGGGGGGAAGAATTCGATGCGTC GGTTGGTCGGTCTCTCAGACTTCCGGCGTCCGACTTAACACGAGTACGAC CGACTCGAGCGTGTCTCGCCTCTCTCCTTTGGCCCGAATGGAACCAATTC GCACAGAGGGGAACCCGGCCCGCAGGGTTTCGCCCGCAGGGCACACTCGT CAGCTTATTACACGGGTAAATACCAGTGAGACTAAACGGTCGCCCGTCGA CGTGTGTATTTGGGATACACGCGCGCACACCCATCGGCTGCCCCACAATC CTGCAGCCATCTTTTTTGTGCCCTCCAACTCCCCCCGATCGCACTGCATC CCTTCCCCCAAGGTTGTCAAGGGAATGAACGTTGCCGACAGTTTGTACCG CGGCTACGGAGAGGGGGCTCCCCAGGGCAACGGGCCGAACCAGGGCAAGA TCCAGAGAGACGGAAACGCTTACCTCGAAAAGTCCTTCTCGAAGCTGAGC TACATCAAGTCTACGAGTACGGTGCCGCGCCCTGCGGATGGAGACTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6368:989..3236+

>mRNA_L-elsbetiae_contig6368.15028.1 ID=mRNA_L-elsbetiae_contig6368.15028.1|Name=mRNA_L-elsbetiae_contig6368.15028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig6368:989..3236+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGGCAACAGCGAGGTAGTAGCCCCCGTTCTCGCAGAGGAAACAGC
CGGAGGCATGGCTTCTGTTGCCCCCGCTCTCGCCGAGGAGGGGATAACGA
GCAAGTTCGACTACATCAAGTTTGACGTCCAGCTTTCGGAGGGGGAGTCC
GGCTCGTTCATCGTGGAGGTCAGGCCGGATTGGGCGCCCCTTGGCGCCCA
GCGTTTCAATACCCTGTCAAAGGCGGGGTTCTTCGCGGGCTGTCGCTTCT
TTCGCGTGCTCCAGGGCTTCATCGCGCAGATGGGAGGCAACAGCGAGGTA
GTAGCCCCCGTTCTCGCAGAGGAAACAGCCGGAGGCATGGCTTCTGTTGC
CCCCGCTCTCGCCGAGGAGGGGATAACGAGCAAGTTCGACTACATCAAGT
TTGACGTCCAGCTTTCGGAGGGGGAGTCCGGCTCGTTCATCGTGGAGGTC
AGGCCGGATTGGGCGCCCCTTGGCGCCCAGCGTTTCAATACCCTGTCAAA
GGCGGGGTTCTTCGCGGGCTGTCGCTTCTTTCGCGTGCTCCAGGGCTTCA
TCGCGCAGTTCGGGATAAACGGAGACCCGACCGTGCAGGCCAAGTACGTC
GGCGCGAGGATTAAAGACGATCCGGTCACGCAGTCCAACAAGCGCGGCAC
CGTGGTTTTCGCCACTTCGGGCAAGGACTCGCGGACAACCCAGGCGAGTT
GGTAGTTCGGGATAAACGGAGACCCGACCGTGCAGGCCAAGTACGTCGGC
GCGAGGATTAAAGACGATCCGGTCACGCAGTCCAACAAGCGCGGCACCGT
GGTTTTCGCCACTTCGGGCAAGGACTCGCGGACAACCCAGGCGAGTTGGT
AG
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