mRNA_L-elsbetiae_contig6367.15027.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6367.15027.1
Unique NamemRNA_L-elsbetiae_contig6367.15027.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6367.15027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6367contigL-elsbetiae_contig6367:8387..11105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size442
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6367.15027.1prot_L-elsbetiae_contig6367.15027.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6367 8387..11044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.6857305-CDS-L-elsbetiae_contig6367:8386..86941622816702.6857305-CDS-L-elsbetiae_contig6367:8386..8694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6367 8387..8694 -
1691683751.6167307-CDS-L-elsbetiae_contig6367:8386..86941691683751.6167307-CDS-L-elsbetiae_contig6367:8386..8694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6367 8387..8694 -
1622816702.6964846-CDS-L-elsbetiae_contig6367:10971..110441622816702.6964846-CDS-L-elsbetiae_contig6367:10971..11044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6367 10972..11044 -
1691683751.6315668-CDS-L-elsbetiae_contig6367:10971..110441691683751.6315668-CDS-L-elsbetiae_contig6367:10971..11044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6367 10972..11044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.7096498-UTR-L-elsbetiae_contig6367:11044..111051622816702.7096498-UTR-L-elsbetiae_contig6367:11044..11105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6367 11045..11105 -
1691683751.643019-UTR-L-elsbetiae_contig6367:11044..111051691683751.643019-UTR-L-elsbetiae_contig6367:11044..11105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6367 11045..11105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6367.15027.1

>prot_L-elsbetiae_contig6367.15027.1 ID=prot_L-elsbetiae_contig6367.15027.1|Name=mRNA_L-elsbetiae_contig6367.15027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MISYALMALVLTIAWSPAAAFTSSASGRGRGDRAPRLLCSKDARCSRTGR
HPRIPPSADGSSSSSSSCRKRRAASPPAASSRPSSTSVQGLLENTGSGSG
TGTGTGTRRPPSNSAAAGSGDAENHNG
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mRNA from alignment at L-elsbetiae_contig6367:8387..11105-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6367.15027.1 ID=mRNA_L-elsbetiae_contig6367.15027.1|Name=mRNA_L-elsbetiae_contig6367.15027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2719bp|location=Sequence derived from alignment at L-elsbetiae_contig6367:8387..11105- (Laminarionema elsbetiae ELsaHSoW15)
GTAAAACGGGGCGCGGGCGCCACGAGAAACCAGCCAAGCCGGAGAAGAGC
AACCTATTGATATGATTTCCTACGCACTGATGGCGTTGGTACTCACGATA
GCATGGAGTCCTGCCGCAGCCTTCACTTCCTCAGGTGTGGGGTGTGGGAT
GTTTTCGAATACGCGCCTGGTTTCTGCGCAATCAACCCCTCTCGCTTCGC
TCGCTGCCCGGAAGCTCAAACTGCGGGATACCTTCGGCCACTCTCACAAC
AAGTCCCCGGTTGATGTTAGAGTCCCGTCGATGCATTGCGTCTTGCTTCT
CATCAGTGAGCAGTTCGTGACGTCGATGACGCAGGCGAATGACCCTGGTG
CCCCTCTGACCGAAACGCGCCAACGCCTTGTGTACCACGGGAAAGGTTTT
CCCGTACCCGCGCAGACTCTGATAGTACTCTTCTGCAAGACCCTTTGTCA
ACGAAAATGTCTATTGCATGGGGCTGTGTATGGGTAGCTGGGGTCTCAAT
TGGTGTTCCACGGGACATCGGTTGAACGCGCTGACTCTATTTTGATTGCG
GCGCATTTTTTTAACTACTATTGACACATGACACATGACACGACGCACAG
AGAGAGCGCCACGACTTCGTGGGTTTGCGTTGTGCGTTGTGCGTACACAG
GAATGCACATGGTTGTCTCTTTTTGCACGGTATCATGGGGCGAAGTAACA
AACAATAGTTCGAGGCATGTGTGGCTACCCAGGGCTCGGGTCGTACAAGC
CCTGGGTGTTACATAGCTTTACACCAGCGAATAATAAACCTAGGTGGCAG
ATTGAGGTAGACGCAAAAGCAAGGCCTCCGCTGGGTTTCCTGCCCTCTCG
CTACACCACGGCTCTGGAGCCTAACACACACCCAACCATCACCCTGTACC
CTAACCCTATCCTAACCCACACCCCAGGCTAGGTTGGTGTGCCGGGGGTT
TAGGCCTACTGTAGGTCGCTGTACGATCTTCTGGCGCATATAAATTTTAC
CCCAGGGCTGGTGTATATATCGACGCCGCGCACTACTACTGTTGTGCCCA
TTTTTCTCCACAACTACAACATTTTTCTCCACAACCGAGAGGGTACGACG
AACGGAAGTATCATGTTCGGATATTAAATATATCGGCGAAGTATTTCCAA
TGGCGCATCTCCCGGCACGAGAACCCTCTCCATTTCAGAGAAAATCGAGC
AACCGAATCGTTTTTCTGTTTTCGGCCCCCCCGGGAGGTACTCAGAAGAG
GTTACGGTATGTACTCCCCACCTTTCGTCTGTGGCGTATTTAGACAGCAA
GACCGGCTGCTGTCGCTGATATGTAGAGAGCCACCAGCAGCATCGGTGGT
CTCTCTTTGTAGAAGCGGCGACTGACTGCAGACTAAAAACCATGGTGTTG
CCGCTACTGCTGTGACCCGAAATCACTATTGTAGTGTACAGCCTCATGCA
AATGATGATCTGACAGCACCTACCTACACCATGTACAAACATTGCACCAT
GCCAACGCTTGATGCGCTCACGTTTACACTGCAACCGACTTCTGAAGAGT
ATTTTCACCAACGAACTTGTATGTATGTATGTATGACATATTATATGGAT
TACGGATTTTGTGTGAGTATATCTTGGGATGGAAAAAGGGGGTTAGTATG
CCTGCAACAGATCTCTCTGGAACGATATTTTCACAGACCGGACGTAGACT
GCTGACATTTGTATAAATTAAGTAAAAACCATCACCATTTTTTCTCCTGT
AATGAAGCAATGTCAGCGGTCGACGTCCAGGCTTTTTTTTTTTTTTTTCA
CATTTATTTCCATTGCTCGATGGGCTCCCTCCCTGTCACAGATCTTGCCA
TAGTACTGAACCGTGGTCACACGGCGTGGTCACGCGAAAGGATTCCTTTC
CCCAAGGCCCCCACTCCCACCGTCTGCGGGGCTTGCCTAAGATTTTTGTT
GCGAGAAGGGTTTAGCCGTCCCTTTACATACCTCGTCGACGGTGAGGTCG
AAGTTTGTGTACACACGCTATGTAAGCGCTATCCACTGACAGGGACAGAA
GCGAGAGAAAAAACTCACTTCGCAAGAAAAAATCGCTCCCGCCAAGTTTT
GAACTCATAACTTGCCTACTAGAAGGTGTTCGGGGGTACCACCTAGACCA
CCGGGGCGACCACTACATCTATATGTAGTACGCTGTAAGCTATGTCTGGA
CGCCGTTCGTTGCCGTTCGCCTCCGAGAGATGATGCCGGCGACGACAGGT
GCACAGTACATAGTATCGCTCTGCGCCGGCCCCAGGAATGTGTCAACCGC
AGGCTCGCAAACAAGCTCAACCAAGCCTTCTTGCTCTGTGTGTTCACCTC
CCCGCTTCCTCTTCTTTCTGCCACGCTCCAAAAACCGGGGGGGGGGGGGG
GGGGGAAGCAGCGTCGGGACGTGGACGGGGAGACCGTGCGCCGCGCCTGC
TTTGCAGCAAGGACGCGCGCTGCAGCAGAACTGGGCGACACCCGCGAATT
CCGCCGTCGGCCGACGGCAGCAGCAGCAGCAGCAGCAGTTGTCGCAAACG
CCGGGCAGCGAGCCCTCCAGCTGCGTCGTCGCGGCCGTCGTCGACGTCCG
TGCAGGGGCTGTTGGAGAACACCGGCAGCGGCAGCGGCACCGGCACCGGC
ACCGGCACTCGCCGCCCGCCCTCCAACAGCGCCGCGGCAGGGAGCGGTGA
TGCAGAAAACCACAACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6367:8387..11105-

>mRNA_L-elsbetiae_contig6367.15027.1 ID=mRNA_L-elsbetiae_contig6367.15027.1|Name=mRNA_L-elsbetiae_contig6367.15027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig6367:8387..11105- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTCCTACGCACTGATGGCGTTGGTACTCACGATAGCATGGAGTCC
TGCCGCAGCCTTCACTTCCTCAGATGATTTCCTACGCACTGATGGCGTTG
GTACTCACGATAGCATGGAGTCCTGCCGCAGCCTTCACTTCCTCAGCGTC
GGGACGTGGACGGGGAGACCGTGCGCCGCGCCTGCTTTGCAGCAAGGACG
CGCGCTGCAGCAGAACTGGGCGACACCCGCGAATTCCGCCGTCGGCCGAC
GGCAGCAGCAGCAGCAGCAGCAGTTGTCGCAAACGCCGGGCAGCGAGCCC
TCCAGCTGCGTCGTCGCGGCCGTCGTCGACGTCCGTGCAGGGGCTGTTGG
AGAACACCGGCAGCGGCAGCGGCACCGGCACCGGCACCGGCACTCGCCGC
CCGCCCTCCAACAGCGCCGCGGCAGGGAGCGGTGATGCAGAAAACCACAA
CGGCCGTCGGGACGTGGACGGGGAGACCGTGCGCCGCGCCTGCTTTGCAG
CAAGGACGCGCGCTGCAGCAGAACTGGGCGACACCCGCGAATTCCGCCGT
CGGCCGACGGCAGCAGCAGCAGCAGCAGCAGTTGTCGCAAACGCCGGGCA
GCGAGCCCTCCAGCTGCGTCGTCGCGGCCGTCGTCGACGTCCGTGCAGGG
GCTGTTGGAGAACACCGGCAGCGGCAGCGGCACCGGCACCGGCACCGGCA
CTCGCCGCCCGCCCTCCAACAGCGCCGCGGCAGGGAGCGGTGATGCAGAA
AACCACAACGGC
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