mRNA_L-elsbetiae_contig6366.15026.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6366.15026.1
Unique NamemRNA_L-elsbetiae_contig6366.15026.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6366.15026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6366contigL-elsbetiae_contig6366:8645..10846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size626
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6366.15026.1prot_L-elsbetiae_contig6366.15026.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6366 8645..10841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.6174712-CDS-L-elsbetiae_contig6366:8644..88791622816702.6174712-CDS-L-elsbetiae_contig6366:8644..8879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6366 8645..8879 -
1691683751.570389-CDS-L-elsbetiae_contig6366:8644..88791691683751.570389-CDS-L-elsbetiae_contig6366:8644..8879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6366 8645..8879 -
1622816702.6300836-CDS-L-elsbetiae_contig6366:9733..100571622816702.6300836-CDS-L-elsbetiae_contig6366:9733..10057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6366 9734..10057 -
1691683751.585003-CDS-L-elsbetiae_contig6366:9733..100571691683751.585003-CDS-L-elsbetiae_contig6366:9733..10057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6366 9734..10057 -
1622816702.64087-CDS-L-elsbetiae_contig6366:10779..108411622816702.64087-CDS-L-elsbetiae_contig6366:10779..10841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6366 10780..10841 -
1691683751.5981266-CDS-L-elsbetiae_contig6366:10779..108411691683751.5981266-CDS-L-elsbetiae_contig6366:10779..10841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6366 10780..10841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816702.6518261-UTR-L-elsbetiae_contig6366:10841..108461622816702.6518261-UTR-L-elsbetiae_contig6366:10841..10846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6366 10842..10846 -
1691683751.6078014-UTR-L-elsbetiae_contig6366:10841..108461691683751.6078014-UTR-L-elsbetiae_contig6366:10841..10846Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6366 10842..10846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6366.15026.1

>prot_L-elsbetiae_contig6366.15026.1 ID=prot_L-elsbetiae_contig6366.15026.1|Name=mRNA_L-elsbetiae_contig6366.15026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MLAHVCSRRTTALANHAGATRLYINAAGAARTEPAAAPACWNSGRDRRFL
RRRLGANTHPLELERPQQRRLLAAKASAASSVGGAVERYRRQGQARQLHA
SRGSHGLGLLADAASSDRPRFDDPPSQRRTPHRCSSRNMVSKSGSDGGGS
GANNGRPAAGADGESTGLPSPENEQRQRQPQQQQQAPPLGGRGACRATAP
SIAPPVA
back to top

mRNA from alignment at L-elsbetiae_contig6366:8645..10846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6366.15026.1 ID=mRNA_L-elsbetiae_contig6366.15026.1|Name=mRNA_L-elsbetiae_contig6366.15026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2202bp|location=Sequence derived from alignment at L-elsbetiae_contig6366:8645..10846- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGATGCTCGCCCACGTGTGCTCTCGGAGAACAACTGCGCTAGCGAAC
CATGCCGGAGCTACTAGGTATGTCTTGCTTCCGCCTTCGAAAAACTGCCG
CAGCAGCAGCTCGGCAGGGTTTGTTGGTTCCAAAATCGAGACTAACAAAT
TTCCTTCAAATTTCCAGATACTTAGGCAGGTGACAGCTTTTTTTGTAGTA
TTGTTACATACCATAGTGTTTTCTCTCACAGGTTGTCTGCCCATGCAAGG
TTTGCCGTTTGAGCTTTGCCCCCCATGTGCGAGCAGAACTGATTTCATAA
AAAATTCTGCGACGATGTATCTGCACGTGTGCACCCATTGACCCACCCCA
CAAAAGAGGAAACACGATGCGCACGATGTAGCCTATCTGTGCGTGGAGAC
GCATGCAGAAGTTTACTGCCCTGTCTGTACGGCCGCATCCCCTCCTACAA
CAAGTATACCGAATGGTCTGAAGAAGAAACACGCAGCATTCGCAAGCAGC
GTCCCGCCCCCCAACGATCTGATTGCAAATACAGCAACGTCAAGCTTTGG
CCTCAACATCAAGTTGATTCTTCCCGGCTCCGGTGCTCGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCC
CCCCCCCCACGCCCCGGCACCCGCCGCCCNNNNNNNNNNACAACACACCT
GCCTTACACAGTTGTAGGCCTACTGCCTGTACTGCCTCCCTCGAGTAGTT
CCTCGCCCCCCCCCCCCCCCCCCCCGTCTTGTGCCTCAGACTTTATATCA
ACGCAGCAGGAGCAGCCAGGACGGAGCCCGCAGCTGCGCCAGCCTGTTGG
AATAGCGGGCGCGACCGTCGGTTCCTGCGGAGACGCCTGGGAGCCAACAC
CCACCCCTTGGAGCTAGAAAGGCCGCAGCAGCGGCGCTTGCTTGCTGCCA
AGGCGTCGGCAGCGTCGTCTGTCGGTGGGGCTGTCGAGCGATATCGGCGG
CAGGGGCAAGCGCGACAGCTGCACGCAAGCCGCGGCTCCCACGGCCTCGG
CCTCCTCGCGGATGCCGCCTCGAGCGACCGACCTCGTTTCGACGATCCGC
CGTCACAACGTCGGTGCGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCG
CCTGGCGGGCCCCCCCCGTTCCCTCCCGCCCCCGCGGCGGACCCCCGGCC
CCCCTCCGCTTCCNNNNNNNNNNCCCCCGCCCCCCCCCCCCCGCGGGGCG
CCCCCCGCGCGCCCCCCCCCGTTTCCCCCCCCCCCCCCCCCGGGGGGGGG
CCCCCCCCCCCCCCCCCCCCCGCGCTCGCGGATGTATTGTGTGCCATGTC
TTAACTACGGCAAGAACGTGTAATAGACCGCGCTACTGCTGTACTCTACT
TCTGATGCTGCACCTACTGTACGCTGTATCCGGCTAGCCAAGAACAGGAC
AGGTATCATTGGTAGTTGGGCACCCCCAAGTGCGTGCTTGCCGGCGGCAT
CCTGTGTGTTTGAGCGTTCATCATCATCATCAGCAGCAGCAGCAGCAGCA
GCCGCGGCAGAGCAACGTGTTTTTATAAACTCGACGTGCATGCTCTGTTT
CTAGACAGCTCGGTGCCTAGCGTTCTTGTGCCTCGAGTATGTTGTTTTTG
AAGAAAATAAGATATACGGCAAGTCATCCACGTGATGGTGATGCCATTCC
TCGTCCCGTCTGCAGAGGACACGCAGTTACAGCGGCGCGTTGGTGTGCGG
CATAGAACAAGAAGACCAACAGGCTCGCTGCTTGCCCCCCCCCTTCCCCC
CCCCAAGGGCATGCCACAGCAAGCAGTCTCTACTCGGAGGTTTCCGCGTG
TAAGCAGCAGTACCTCCCTCTGCCGCTGTTCGGGTGCTGTTTTCACAAGC
CAACATCCAGTGTACGATCCCTCTCTCTCCCCCCCCTTCCTTCTCTTCTC
TCATCCTTGTTCCTCAGCACGCCCCATAGATGTAGCAGCCGAAACATGGT
GTCCAAATCCGGCAGCGATGGCGGCGGCAGCGGCGCTAATAACGGTCGCC
CCGCAGCTGGAGCTGACGGGGAAAGCACGGGCCTCCCGTCCCCGGAGAAC
GAGCAGCGGCAGCGACAGCCGCAGCAGCAGCAGCAGGCGCCGCCGCTAGG
GGGGCGGGGAGCGTGTCGGGCGACGGCACCGTCGATCGCACCACCGGTGG
CC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6366:8645..10846-

>mRNA_L-elsbetiae_contig6366.15026.1 ID=mRNA_L-elsbetiae_contig6366.15026.1|Name=mRNA_L-elsbetiae_contig6366.15026.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig6366:8645..10846- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGCCCACGTGTGCTCTCGGAGAACAACTGCGCTAGCGAACCATGC
CGGAGCTACTAGATGCTCGCCCACGTGTGCTCTCGGAGAACAACTGCGCT
AGCGAACCATGCCGGAGCTACTAGACTTTATATCAACGCAGCAGGAGCAG
CCAGGACGGAGCCCGCAGCTGCGCCAGCCTGTTGGAATAGCGGGCGCGAC
CGTCGGTTCCTGCGGAGACGCCTGGGAGCCAACACCCACCCCTTGGAGCT
AGAAAGGCCGCAGCAGCGGCGCTTGCTTGCTGCCAAGGCGTCGGCAGCGT
CGTCTGTCGGTGGGGCTGTCGAGCGATATCGGCGGCAGGGGCAAGCGCGA
CAGCTGCACGCAAGCCGCGGCTCCCACGGCCTCGGCCTCCTCGCGGATGC
CGCCTCGAGCGACCGACCTCGTTTCGACGATCCGCCGTCACAACGTCGAC
TTTATATCAACGCAGCAGGAGCAGCCAGGACGGAGCCCGCAGCTGCGCCA
GCCTGTTGGAATAGCGGGCGCGACCGTCGGTTCCTGCGGAGACGCCTGGG
AGCCAACACCCACCCCTTGGAGCTAGAAAGGCCGCAGCAGCGGCGCTTGC
TTGCTGCCAAGGCGTCGGCAGCGTCGTCTGTCGGTGGGGCTGTCGAGCGA
TATCGGCGGCAGGGGCAAGCGCGACAGCTGCACGCAAGCCGCGGCTCCCA
CGGCCTCGGCCTCCTCGCGGATGCCGCCTCGAGCGACCGACCTCGTTTCG
ACGATCCGCCGTCACAACGTCGCACGCCCCATAGATGTAGCAGCCGAAAC
ATGGTGTCCAAATCCGGCAGCGATGGCGGCGGCAGCGGCGCTAATAACGG
TCGCCCCGCAGCTGGAGCTGACGGGGAAAGCACGGGCCTCCCGTCCCCGG
AGAACGAGCAGCGGCAGCGACAGCCGCAGCAGCAGCAGCAGGCGCCGCCG
CTAGGGGGGCGGGGAGCGTGTCGGGCGACGGCACCGTCGATCGCACCACC
GGTGGCCCACGCCCCATAGATGTAGCAGCCGAAACATGGTGTCCAAATCC
GGCAGCGATGGCGGCGGCAGCGGCGCTAATAACGGTCGCCCCGCAGCTGG
AGCTGACGGGGAAAGCACGGGCCTCCCGTCCCCGGAGAACGAGCAGCGGC
AGCGACAGCCGCAGCAGCAGCAGCAGGCGCCGCCGCTAGGGGGGCGGGGA
GCGTGTCGGGCGACGGCACCGTCGATCGCACCACCGGTGGCC
back to top