mRNA_L-elsbetiae_contig636.15019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig636.15019.1
Unique NamemRNA_L-elsbetiae_contig636.15019.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig636.15019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig636contigL-elsbetiae_contig636:6779..7458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size680
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig636.15019.1prot_L-elsbetiae_contig636.15019.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig636 6970..7368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.8879495-UTR-L-elsbetiae_contig636:6778..69691622816701.8879495-UTR-L-elsbetiae_contig636:6778..6969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig636 6779..6969 +
1691683750.9686913-UTR-L-elsbetiae_contig636:6778..69691691683750.9686913-UTR-L-elsbetiae_contig636:6778..6969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig636 6779..6969 +
1622816701.9094229-UTR-L-elsbetiae_contig636:7368..74581622816701.9094229-UTR-L-elsbetiae_contig636:7368..7458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig636 7369..7458 +
1691683750.9917612-UTR-L-elsbetiae_contig636:7368..74581691683750.9917612-UTR-L-elsbetiae_contig636:7368..7458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig636 7369..7458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.8980188-CDS-L-elsbetiae_contig636:6969..73681622816701.8980188-CDS-L-elsbetiae_contig636:6969..7368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 6970..7368 +
1691683750.9814682-CDS-L-elsbetiae_contig636:6969..73681691683750.9814682-CDS-L-elsbetiae_contig636:6969..7368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig636 6970..7368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig636.15019.1

>prot_L-elsbetiae_contig636.15019.1 ID=prot_L-elsbetiae_contig636.15019.1|Name=mRNA_L-elsbetiae_contig636.15019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MISSLAGLLSRHVLRPLGLSLSCFVLDEKKAETGFPRSNFFFFSFHHVND
TSARGHFARALIRVHRRVLLLRPPHPLEGFDARTNPLLTAARGAAHLHSL
SCLDQILRCMRRAPLPREPQQQHMPSRFRAPA*
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mRNA from alignment at L-elsbetiae_contig636:6779..7458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig636.15019.1 ID=mRNA_L-elsbetiae_contig636.15019.1|Name=mRNA_L-elsbetiae_contig636.15019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=680bp|location=Sequence derived from alignment at L-elsbetiae_contig636:6779..7458+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGGGCTGTGCTCGTGGGAGGAGTGGAGGGTTGCGTACCGCACCTCACG
CGCGGAGCCATCACACATGCCGCTGTGTTTAGCACCCTTTACAGTAGTGT
ACACTGCTGTGCGTCTGTAGGCATGCAACAGGCACGAGGGACGTTCGTTG
CAGTCGGGGCCGGCCGACAAGAAGCATGGGCAGGTTGATGAATGATCTCA
TCACTCGCAGGACTGCTGTCTAGACACGTTCTTCGCCCCCTCGGTCTCTC
CCTCTCTTGCTTTGTCTTGGATGAAAAAAAAGCAGAAACTGGCTTTCCTC
GCTCCAACTTTTTTTTCTTTTCTTTCCATCACGTGAATGACACCAGCGCT
CGAGGGCATTTTGCCAGAGCTCTGATCCGTGTTCACAGAAGGGTTCTTCT
CCTGAGGCCTCCACACCCATTAGAGGGCTTTGACGCGCGGACAAATCCCT
TACTAACCGCGGCGCGGGGTGCTGCCCATCTTCACTCTCTATCTTGCCTT
GATCAGATCCTTCGATGTATGCGGAGAGCACCTCTACCAAGGGAACCCCA
ACAACAACATATGCCGAGCAGATTTAGAGCGCCAGCATAGTAGCACGTTT
GCATCCGATGGTAACACAGGTACACATTTGCTTGATCACCGCACGGTAGT
CCGAGAGGAATCAAGAGTGAGAGCTTTTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig636:6779..7458+

>mRNA_L-elsbetiae_contig636.15019.1 ID=mRNA_L-elsbetiae_contig636.15019.1|Name=mRNA_L-elsbetiae_contig636.15019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig636:6779..7458+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCTCATCACTCGCAGGACTGCTGTCTAGACACGTTCTTCGCCCCCT
CGGTCTCTCCCTCTCTTGCTTTGTCTTGGATGAAAAAAAAGCAGAAACTG
GCTTTCCTCGCTCCAACTTTTTTTTCTTTTCTTTCCATCACGTGAATGAC
ACCAGCGCTCGAGGGCATTTTGCCAGAGCTCTGATCCGTGTTCACAGAAG
GGTTCTTCTCCTGAGGCCTCCACACCCATTAGAGGGCTTTGACGCGCGGA
CAAATCCCTTACTAACCGCGGCGCGGGGTGCTGCCCATCTTCACTCTCTA
TCTTGCCTTGATCAGATCCTTCGATGTATGCGGAGAGCACCTCTACCAAG
GGAACCCCAACAACAACATATGCCGAGCAGATTTAGAGCGCCAGCATAGA
TGATCTCATCACTCGCAGGACTGCTGTCTAGACACGTTCTTCGCCCCCTC
GGTCTCTCCCTCTCTTGCTTTGTCTTGGATGAAAAAAAAGCAGAAACTGG
CTTTCCTCGCTCCAACTTTTTTTTCTTTTCTTTCCATCACGTGAATGACA
CCAGCGCTCGAGGGCATTTTGCCAGAGCTCTGATCCGTGTTCACAGAAGG
GTTCTTCTCCTGAGGCCTCCACACCCATTAGAGGGCTTTGACGCGCGGAC
AAATCCCTTACTAACCGCGGCGCGGGGTGCTGCCCATCTTCACTCTCTAT
CTTGCCTTGATCAGATCCTTCGATGTATGCGGAGAGCACCTCTACCAAGG
GAACCCCAACAACAACATATGCCGAGCAGATTTAGAGCGCCAGCATAG
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