mRNA_L-elsbetiae_contig6359.15018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6359.15018.1
Unique NamemRNA_L-elsbetiae_contig6359.15018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6359.15018.1 vs. uniprot
Match: D8LQF7_ECTSI (Calmodulin-dependent protein kinase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF7_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.250e-27
Identity = 81/192 (42.19%), Postives = 102/192 (53.12%), Query Frame = -2 
Query:    3 YGSEVNAAFPTALALDAAAAGPNQGFSRKSSRRVIEIIRRNTGGLLRSSTRVLQPDGNDTLGGRENTKLGSAGTAERAATEATS-KDDGQRIAVPPASP----------RPSAAFSLRRKLSSMLGLGAHTPNGEMALD-----------WKPHEKISNMLGYRPRDHGRHFTESYTMSGVLGMGGFGVVRE 512
            YGSE N AFP ALALDAA A     ++R++SRR++        GL+R S     P G  +L  RE+T+            +ATS K D +R+AV P+ P          RP    S+ RKL+  LG      +G  + D           WKPHEKI  MLGYRPR +G+ FT  YT+  VLGMGGFGVVRE
Sbjct:   35 YGSEANDAFPNALALDAATAPSRGNYAREASRRIV--------GLIRGSKSSPSPAGGASLP-REDTQQ---------VKDATSGKQDAERVAVIPSRPTPPRSSVNGSRPQERVSIARKLTKFLGFDGARTSGAKSSDVPEDAAAPLVYWKPHEKILKMLGYRPRGYGQPFTNRYTLGEVLGMGGFGVVRE 208
[Close]
BLAST of mRNA_L-elsbetiae_contig6359.15018.1 vs. uniprot
Match: A0A6H5K1J2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.150e-26
Identity = 77/191 (40.31%), Postives = 98/191 (51.31%), Query Frame = -2 
Query:    3 YGSEVNAAFPTALALDAAAAGPNQGFSRKSSRRVIEIIRRNTGGLLRSSTRVLQPDGNDTLGGRENTKLGSAGTAERAATEATSKDDGQRIAVPPASP----------RPSAAFSLRRKLSSMLGLG-AHTPNGEMA----------LDWKPHEKISNMLGYRPRDHGRHFTESYTMSGVLGMGGFGVVRE 512
            YGSE N AFP ALALDAA A     + RK+SR+++        GL+  S     P    +L   +   +  A          + K D +RIAV P+ P          RP    S+ RKLS ++G   A TP  + +          +DWKPHEKIS MLGYRPR +G+ FT  YT+  VLG GGFGVVRE
Sbjct:   35 YGSEANDAFPNALALDAATAPTRGNYVRKASRQIM--------GLILGSKSSPSPADRASLPREDKQHVEDA---------TSGKQDAERIAVIPSRPTSPPSSVNRSRPQERVSVARKLSKLMGFDRARTPGAKSSNVPEDAAASLVDWKPHEKISKMLGYRPRGYGQPFTNRYTLGEVLGKGGFGVVRE 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6359.15018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQF7_ECTSI6.250e-2742.19Calmodulin-dependent protein kinase I n=1 Tax=Ecto... [more]
A0A6H5K1J2_9PHAE4.150e-2640.31Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6359contigL-elsbetiae_contig6359:9999..10511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size414
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.7241988-UTR-L-elsbetiae_contig6359:9998..100971622816701.7241988-UTR-L-elsbetiae_contig6359:9998..10097Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6359 9999..10097 +
1691683750.8661463-UTR-L-elsbetiae_contig6359:9998..100971691683750.8661463-UTR-L-elsbetiae_contig6359:9998..10097Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6359 9999..10097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.7371147-CDS-L-elsbetiae_contig6359:10097..105111622816701.7371147-CDS-L-elsbetiae_contig6359:10097..10511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6359 10098..10511 +
1691683750.8777356-CDS-L-elsbetiae_contig6359:10097..105111691683750.8777356-CDS-L-elsbetiae_contig6359:10097..10511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6359 10098..10511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6359.15018.1prot_L-elsbetiae_contig6359.15018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6359 10098..10511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6359.15018.1

>prot_L-elsbetiae_contig6359.15018.1 ID=prot_L-elsbetiae_contig6359.15018.1|Name=mRNA_L-elsbetiae_contig6359.15018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MFDIFSCGFQSRAISPLGVWAPRPSMLLSFLLRLKAADGRGDAGGTAIRW
PSSLLVASVAALSAVPAEPSFVFSLPPSVSLPSGCKTLVLLRSRPPVLRR
IISITRLEDFLEKPWLGPAAAASRASAVGNAALTSEP*
back to top

mRNA from alignment at L-elsbetiae_contig6359:9999..10511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6359.15018.1 ID=mRNA_L-elsbetiae_contig6359.15018.1|Name=mRNA_L-elsbetiae_contig6359.15018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=513bp|location=Sequence derived from alignment at L-elsbetiae_contig6359:9999..10511+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTCTCGTACCACGCCAAAGCCTCCCATGCCTAGTACTCCGCTCATGGT
ATAGCTCTCTGTGAAATGCCGCCCATGATCTCTTGGTCGGTAGCCCAACA
TGTTCGATATTTTTTCGTGCGGCTTCCAGTCGAGAGCCATTTCTCCATTG
GGCGTATGGGCTCCAAGACCAAGCATGCTACTGAGCTTTCTCCTCAGGCT
AAAGGCAGCGGATGGTCGGGGTGACGCAGGTGGAACTGCGATACGCTGGC
CGTCATCTTTACTGGTCGCCTCCGTCGCCGCCCTCTCTGCCGTCCCAGCC
GAGCCGAGTTTCGTATTTTCTCTTCCGCCGAGTGTATCATTGCCGTCAGG
CTGTAAGACTCTTGTACTACTGCGGAGTAGGCCCCCAGTATTACGGCGGA
TAATTTCTATAACGCGCCTGGAGGATTTTCTAGAGAAGCCCTGGTTGGGG
CCAGCAGCAGCGGCGTCAAGGGCGAGCGCAGTTGGGAACGCGGCGTTAAC
TTCAGAGCCGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6359:9999..10511+

>mRNA_L-elsbetiae_contig6359.15018.1 ID=mRNA_L-elsbetiae_contig6359.15018.1|Name=mRNA_L-elsbetiae_contig6359.15018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig6359:9999..10511+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGATATTTTTTCGTGCGGCTTCCAGTCGAGAGCCATTTCTCCATT
GGGCGTATGGGCTCCAAGACCAAGCATGCTACTGAGCTTTCTCCTCAGGC
TAAAGGCAGCGGATGGTCGGGGTGACGCAGGTGGAACTGCGATACGCTGG
CCGTCATCTTTACTGGTCGCCTCCGTCGCCGCCCTCTCTGCCGTCCCAGC
CGAGCCGAGTTTCGTATTTTCTCTTCCGCCGAGTGTATCATTGCCGTCAG
GCTGTAAGACTCTTGTACTACTGCGGAGTAGGCCCCCAGTATTACGGCGG
ATAATTTCTATAACGCGCCTGGAGGATTTTCTAGAGAAGCCCTGGTTGGG
GCCAGCAGCAGCGGCGTCAAGGGCGAGCGCAGTTGGGAACGCGGCGTTAA
CTTCAGAGCCGTAGATGTTCGATATTTTTTCGTGCGGCTTCCAGTCGAGA
GCCATTTCTCCATTGGGCGTATGGGCTCCAAGACCAAGCATGCTACTGAG
CTTTCTCCTCAGGCTAAAGGCAGCGGATGGTCGGGGTGACGCAGGTGGAA
CTGCGATACGCTGGCCGTCATCTTTACTGGTCGCCTCCGTCGCCGCCCTC
TCTGCCGTCCCAGCCGAGCCGAGTTTCGTATTTTCTCTTCCGCCGAGTGT
ATCATTGCCGTCAGGCTGTAAGACTCTTGTACTACTGCGGAGTAGGCCCC
CAGTATTACGGCGGATAATTTCTATAACGCGCCTGGAGGATTTTCTAGAG
AAGCCCTGGTTGGGGCCAGCAGCAGCGGCGTCAAGGGCGAGCGCAGTTGG
GAACGCGGCGTTAACTTCAGAGCCGTAG
back to top