mRNA_L-elsbetiae_contig6357.15016.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6357.15016.1
Unique NamemRNA_L-elsbetiae_contig6357.15016.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6357.15016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6357contigL-elsbetiae_contig6357:10199..11157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_007640.3
Exons3
Model size355
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6357.15016.1prot_L-elsbetiae_contig6357.15016.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6357 10199..11156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.6617842-CDS-L-elsbetiae_contig6357:10198..102781622816701.6617842-CDS-L-elsbetiae_contig6357:10198..10278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 10199..10278 +
1691683750.8324134-CDS-L-elsbetiae_contig6357:10198..102781691683750.8324134-CDS-L-elsbetiae_contig6357:10198..10278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 10199..10278 +
1622816701.675999-CDS-L-elsbetiae_contig6357:10492..106851622816701.675999-CDS-L-elsbetiae_contig6357:10492..10685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 10493..10685 +
1691683750.8446307-CDS-L-elsbetiae_contig6357:10492..106851691683750.8446307-CDS-L-elsbetiae_contig6357:10492..10685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 10493..10685 +
1622816701.691128-CDS-L-elsbetiae_contig6357:11075..111561622816701.691128-CDS-L-elsbetiae_contig6357:11075..11156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 11076..11156 +
1691683750.8549347-CDS-L-elsbetiae_contig6357:11075..111561691683750.8549347-CDS-L-elsbetiae_contig6357:11075..11156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 11076..11156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6357.15016.1

>prot_L-elsbetiae_contig6357.15016.1 ID=prot_L-elsbetiae_contig6357.15016.1|Name=mRNA_L-elsbetiae_contig6357.15016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
DGLTAIRFPKCAFYHCQADLLSGEGARFCAFHAIDHAAKCAVSQPACPNL
QEPGRLTCEAHREWEDQYNAYYGRGGYHAKLRARAEGDVDEPAWMVYLRS
MFALRYSFGYLICTFSCG
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mRNA from alignment at L-elsbetiae_contig6357:10199..11157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6357.15016.1 ID=mRNA_L-elsbetiae_contig6357.15016.1|Name=mRNA_L-elsbetiae_contig6357.15016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=959bp|location=Sequence derived from alignment at L-elsbetiae_contig6357:10199..11157+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGGCTCACTGCCATCCGTTTCCCAAAGTGCGCGTTTTACCATTGCCA
GGCCGATCTACTGTCTGGCGAAGGGGCTAGGTGAGCCGTTACCTAACCCA
TGCCCATCATATACATGAGGTCTTTAACGTAAAACACAAGCATACAATAC
TAACACGTTCAGGTAAACTCCCCGTTGCTTATTCAAGGATCCTCATTATT
TTTAATTTTTGGTAGCCTGTGTTGCCATCACGACGTTTATATGTGCTGAT
TCGTATCCGGAGTGACTCTTTTGTGATGCGTTCTCTTGCTTCAGGTTCTG
CGCCTTTCACGCGATCGATCATGCGGCGAAGTGCGCGGTTTCCCAGCCTG
CGTGCCCTAACCTGCAAGAACCGGGGCGTCTCACGTGTGAGGCGCACAGG
GAGTGGGAAGATCAGTACAACGCGTACTATGGACGTGGTGGCTATCATGC
CAAGCTACGCGCTAGGGCCGAAGGGGATGTGGACGAGGTGCGCAAGTTAA
CTTTTACCCCTTTCCTACATGCATGGCAGAGAGCTATCATCCATGGTTTT
GTCGGGCATTCTTCTTAGTACCTTGTGTGTGGTCCGGTTGGCATCCACAC
AGAATTCGTCCAAACGCTCAAGGTGTTCGTGAAACGCATTCGCAGAACCC
TCAAAACACATCACCCAGTTAGCTCGGAAGGGTTCATGAACGCACACCGG
CTCCAGATTCAGTTACCCACTGACTTGTTCTGTAGCCCTTCTGACTTGTT
CCCGCCCTGGAATGAGCCCGATATCTTGCGCTGTTGACAACCTCGGACCA
TTAAGTATATCTCGAGGGCCCGTTTTATATTAACAATGCCTTCTCTTCCT
AAACCGCCGCCCGAACCATACGACCAGCCGGCATGGATGGTCTACTTGAG
GAGTATGTTCGCCTTGCGATACTCGTTCGGTTACTTGATATGCACGTTTT
CGTGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6357:10199..11157+

>mRNA_L-elsbetiae_contig6357.15016.1 ID=mRNA_L-elsbetiae_contig6357.15016.1|Name=mRNA_L-elsbetiae_contig6357.15016.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig6357:10199..11157+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGGCTCACTGCCATCCGTTTCCCAAAGTGCGCGTTTTACCATTGCCA
GGCCGATCTACTGTCTGGCGAAGGGGCTAGGACGGGCTCACTGCCATCCG
TTTCCCAAAGTGCGCGTTTTACCATTGCCAGGCCGATCTACTGTCTGGCG
AAGGGGCTAGGTTCTGCGCCTTTCACGCGATCGATCATGCGGCGAAGTGC
GCGGTTTCCCAGCCTGCGTGCCCTAACCTGCAAGAACCGGGGCGTCTCAC
GTGTGAGGCGCACAGGGAGTGGGAAGATCAGTACAACGCGTACTATGGAC
GTGGTGGCTATCATGCCAAGCTACGCGCTAGGGCCGAAGGGGATGTGGAC
GAGGTTCTGCGCCTTTCACGCGATCGATCATGCGGCGAAGTGCGCGGTTT
CCCAGCCTGCGTGCCCTAACCTGCAAGAACCGGGGCGTCTCACGTGTGAG
GCGCACAGGGAGTGGGAAGATCAGTACAACGCGTACTATGGACGTGGTGG
CTATCATGCCAAGCTACGCGCTAGGGCCGAAGGGGATGTGGACGAGCCGG
CATGGATGGTCTACTTGAGGAGTATGTTCGCCTTGCGATACTCGTTCGGT
TACTTGATATGCACGTTTTCGTGCGGCCCGGCATGGATGGTCTACTTGAG
GAGTATGTTCGCCTTGCGATACTCGTTCGGTTACTTGATATGCACGTTTT
CGTGCGGC
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