mRNA_L-elsbetiae_contig6357.15015.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6357.15015.1
Unique NamemRNA_L-elsbetiae_contig6357.15015.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.690e-30
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 2 
Query:  158 GGYFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            GGYFG FGG+Y+PE LVE   +LEEAYE AK DPAF EEVAWYRREYIGGPTPMYHAKRLTEEMGGA
Sbjct:  350 GGYFGDFGGRYIPETLVEAHRELEEAYEAAKADPAFHEEVAWYRREYIGGPTPMYHAKRLTEEMGGA 416
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: W7TQB9_9STRA (Tryptophan synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQB9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.690e-24
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 2 
Query:  164 YFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            +FG FGG+Y+PE LVE   +LEEAYE A  DPAF+EEVA+YR++YIGGPTPMYHAKRLTE +GGA
Sbjct:  354 HFGEFGGRYIPETLVEAHRELEEAYEAALKDPAFQEEVAFYRKQYIGGPTPMYHAKRLTEAVGGA 418
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: D8LQU8_ECTSI (Tryptophan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.300e-23
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 2 
Query:  158 GGYFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGG 355
            GG  G FGG Y+PE LVE    LEEAY  AK DP FREE+AWYRREYIGGPTP++HAK L+EEMGG
Sbjct:  289 GGNIGAFGGCYIPETLVEAHRGLEEAYAAAKADPCFREELAWYRREYIGGPTPLHHAKSLSEEMGG 354
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: A0A835YTN0_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.320e-23
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 2 
Query:  164 YFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            YFG FGG+Y+PE LVE   +LE+AY  A+ DP F EE+AWYR+EYIGGPT MYHAKRL+E++GGA
Sbjct:  370 YFGAFGGRYIPETLVEAHRELEQAYAEAQADPKFHEEIAWYRKEYIGGPTVMYHAKRLSEQLGGA 434
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: H6WB94_VAULI (Tryptophan synthase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB94_VAULI)

HSP 1 Score: 102 bits (254), Expect = 6.080e-23
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 2 
Query:  155 RGGYFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            R  YFG +GG+++PE LVE   +LE+AYE A  DP F EEV WYR+EYIGGPT MYHAKRL+E+MGGA
Sbjct:  258 RSAYFGDYGGRFIPETLVEAHRELEQAYEEALADPKFHEEVDWYRKEYIGGPTVMYHAKRLSEKMGGA 325
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: A0A8J5XVG6_DIALT (Tryptophan synthase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XVG6_DIALT)

HSP 1 Score: 99.8 bits (247), Expect = 5.460e-22
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 2 
Query:  164 YFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            +FG FGG+Y+PE LVE   +LEEAY+ AK DPAF  EVA YR  YIGGPTPMYHAKRL+ EMGGA
Sbjct:  304 HFGEFGGRYIPETLVEAHRELEEAYDKAKKDPAFHAEVAEYRARYIGGPTPMYHAKRLSAEMGGA 368
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: A0A835YUB9_9STRA (Tryptophan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.830e-22
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 2 
Query:  164 YFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            YFG FGG+++PE LVE   +LE+AY  A+ DP F++E+ WYR+EYIGGPT +YHAKRLTE++GGA
Sbjct:    5 YFGEFGGRFIPETLVEAHRELEDAYAAAQADPEFQKELDWYRKEYIGGPTVLYHAKRLTEQVGGA 69
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: A0A7S0Y4J5_HEMAN (Tryptophan synthase n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0Y4J5_HEMAN)

HSP 1 Score: 95.1 bits (235), Expect = 2.280e-20
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:  167 FGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            FG FGG+Y+PE LVE   +LE+ Y  A  DP+F EEVA YRREYIGGPTP YHAKRLTE MGGA
Sbjct:  314 FGEFGGRYIPETLVEAHEELEKEYIKAMKDPSFLEEVARYRREYIGGPTPTYHAKRLTEMMGGA 377
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: A0A1C0YHU8_9BACL (Tryptophan synthase beta chain n=1 Tax=Caryophanon latum TaxID=33977 RepID=A0A1C0YHU8_9BACL)

HSP 1 Score: 92.4 bits (228), Expect = 1.060e-19
Identity = 40/66 (60.61%), Postives = 54/66 (81.82%), Query Frame = 2 
Query:  161 GYFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGGA 358
            GY+G FGGQ+VPE L+  L +LE+AYE AK D AF+EE+A+Y REY+G  TP+Y+A+ LT+E+GGA
Sbjct:    8 GYYGRFGGQFVPETLMTALQELEDAYEVAKNDDAFQEELAYYLREYVGRATPLYYAEGLTKELGGA 73
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BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Match: A0A7C4WLN5_9DELT (Tryptophan synthase subunit beta (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4WLN5_9DELT)

HSP 1 Score: 84.7 bits (208), Expect = 2.600e-19
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  143 RRR*RGGYFGGFGGQYVPELLVEGLSKLEEAYETAKGDPAFREEVAWYRREYIGGPTPMYHAKRLTEEMGG 355
            RR  R G+FG FGG+YVPE L+  L +LE  Y ++KGDP F+ E+  + ++Y+G PTP+Y AKRLTEE+ G
Sbjct:    2 RRHDRRGHFGIFGGKYVPETLIAPLEELERVYLSSKGDPLFQRELRGHLKDYVGRPTPLYFAKRLTEELRG 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6357.15015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB1_ECTSI1.690e-3083.58Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
W7TQB9_9STRA9.690e-2472.31Tryptophan synthase n=2 Tax=Monodopsidaceae TaxID=... [more]
D8LQU8_ECTSI1.300e-2371.21Tryptophan synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YTN0_9STRA1.320e-2367.69Tryptophan synthase n=1 Tax=Tribonema minus TaxID=... [more]
H6WB94_VAULI6.080e-2366.18Tryptophan synthase n=1 Tax=Vaucheria litorea TaxI... [more]
A0A8J5XVG6_DIALT5.460e-2270.77Tryptophan synthase n=1 Tax=Diacronema lutheri Tax... [more]
A0A835YUB9_9STRA7.830e-2263.08Tryptophan synthase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S0Y4J5_HEMAN2.280e-2070.31Tryptophan synthase n=3 Tax=Hemiselmis TaxID=77924... [more]
A0A1C0YHU8_9BACL1.060e-1960.61Tryptophan synthase beta chain n=1 Tax=Caryophanon... [more]
A0A7C4WLN5_9DELT2.600e-1953.52Tryptophan synthase subunit beta (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6357contigL-elsbetiae_contig6357:5380..7629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size359
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6357.15015.1prot_L-elsbetiae_contig6357.15015.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6357 5517..7629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.5959017-UTR-L-elsbetiae_contig6357:5379..55161622816701.5959017-UTR-L-elsbetiae_contig6357:5379..5516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6357 5380..5516 -
1691683750.7876322-UTR-L-elsbetiae_contig6357:5379..55161691683750.7876322-UTR-L-elsbetiae_contig6357:5379..5516Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6357 5380..5516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.6071742-CDS-L-elsbetiae_contig6357:5516..55191622816701.6071742-CDS-L-elsbetiae_contig6357:5516..5519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 5517..5519 -
1691683750.800507-CDS-L-elsbetiae_contig6357:5516..55191691683750.800507-CDS-L-elsbetiae_contig6357:5516..5519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 5517..5519 -
1622816701.6198106-CDS-L-elsbetiae_contig6357:6551..66981622816701.6198106-CDS-L-elsbetiae_contig6357:6551..6698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 6552..6698 -
1691683750.8106863-CDS-L-elsbetiae_contig6357:6551..66981691683750.8106863-CDS-L-elsbetiae_contig6357:6551..6698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 6552..6698 -
1622816701.6302695-CDS-L-elsbetiae_contig6357:7557..76291622816701.6302695-CDS-L-elsbetiae_contig6357:7557..7629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 7558..7629 -
1691683750.821204-CDS-L-elsbetiae_contig6357:7557..76291691683750.821204-CDS-L-elsbetiae_contig6357:7557..7629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6357 7558..7629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6357.15015.1

>prot_L-elsbetiae_contig6357.15015.1 ID=prot_L-elsbetiae_contig6357.15015.1|Name=mRNA_L-elsbetiae_contig6357.15015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
AGGRGRGVDGVEVKARISTEGTNELPLLPLLLPPLLPLLPLLLLLLLPPP
LTWRILRGLRGTVRTGTARRGPQ*
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mRNA from alignment at L-elsbetiae_contig6357:5380..7629-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6357.15015.1 ID=mRNA_L-elsbetiae_contig6357.15015.1|Name=mRNA_L-elsbetiae_contig6357.15015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2250bp|location=Sequence derived from alignment at L-elsbetiae_contig6357:5380..7629- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGAGGACGTGGTCGTGGAGTGGACGGGGTCGAAGTCAAGGCGCGGAT
CTCAACCGAGGGCACCAACGAGGTCAGTTACGCTTTCAGGCTGTCAGGCT
GTTACTTAGCCAAGCGGGCCTTCCTTTCCCGACTCGCGCGCACATGTATG
TTTTGGTCATGGTGCTGGTGTAGTGGTTCCTGCTGTTGTTGTTGAGCAAC
TCCGTGCAGGTATGGTATTGCCTAGTATGGTATGGTACGGGGCCCCCGAT
GACATTTCCCAGAGAGGGAAACGTAAGTGTCTGTGTCTTGACGGGGTCGG
AAGTTGTAGCTTGTAGCTTTCCGTCCCGTCCCTCGAGTGTTTTGCGATAA
GTAATCGCCATGTCCATTTCGGGAAGGGCAAACAGACAGCAGTAATTTTC
GCTTATTATTTGTGCATATATACGTACCGTCGTCGGTTGGACTACTGTTG
TGTTTTTGCCCTGCTGCAAGCAAGCGCGGCCGTCTCAAATCGAAAGCGAG
CAGCAAAAAGCGCGTCGGATCGGTCTCTTGAATGTGACGCTCTCTCCGCC
GTCGCCGCCACAAGCAGACTGACGATGCCCGTGACCTTCGTCTGCCGTTG
TTTGCTTGGGCGGGTCAATATTGTTTTGTTTTTTTTATCGCGAGCCCAAC
CATCGCAAGCAGAACCGCTCAAAGGGGTCTGGGCTACGATGGACAGTATT
GATGAAGGCTTGCCGACGCGTGCCCCCCCCCCTCCCTCCTCGGGTGGTTG
TGCGGGGTTTATGCACGTGCATTTCCTGCTGTTCTGATGTCGTTCGCTAC
AGAGAGCTGCGCTACTCTACCTCTATATAGATAGTCTGTCGGCGCTCGTG
TTGCCGGAATTTCCGGCCGGCGTTTGTCGCACTGAGCGCTGACTAACAGA
CGCCTGCCTGTTGTGTGCTGCTGCTGCTGCGCTGCCGCTGCTGCCGCTCC
TGCTGCCGCCGTTGCTGCCGCTGCTGCCGCTGCTGCTGCTGCTGCTGCTA
CCGCCGCCGCTGACGTGGCGGATACTTCGGGGGCTTCGGGGGACAGTACG
TACCGGAACTGCTCGTAGAGGGCCTCAGGTTAGTCGCCGGGGCCGGGACG
CGATTACATTTCTCAACATTTTGCGCCGGGCTGCTGTACTGGAAGAATGA
GTGTGGTATGTATGTAGGCGCAGTTATTGCTCTCCTCTCTCTGATGGGTT
ATACCGCGTACACTATGAGCACACGTTTCGCCGGGTTGCTGTCTGGAGCA
AGAGGGTGTTGGGCACAATCATCGCGCGCTCTCTCTCTCTCTCTGGTGGG
TGGATCATACCGGAATTCGTAGGTTCGTTTAGATCCAGTTAGCGCTCGCT
TACCGGTCGAGTGTGTATTGTAGGAAGGTTCAGCCACCCCGCCCCCCTTG
CCCGGACAGGGGCGCGCTCGCTGTGAGCTAAACGGGTGGTGGGGTGTTGC
AGAGGGTTTTACGGGAGAGTGGCACGTAAGGAAGGTGACAACGAAATGAA
GAGGGGGAGAGGCGTTCAGCAAATTTTTCCAAACTTTAATCTTTCGACAG
CGTTCTGCATAACTTTACAGTAGTACCGGCCCGCTAAATAGTAAGAAAGC
TCCGAGTAGGGAAGTCAGCCTGAAAAAGGTTTGGAAATAAGAAAGAGTGG
GGCTCCGTGGCGAGTGCCACACTAAATCCTGTATTAGGCGGCGATGGTCT
TCGGCCTTGCATCAGAAGCCTAACCCGGTGAACCAGACCTCTGTACATTT
GTTTATTTATTCTTCTGCGGCGTCGAGTGTGCCTTGTTTTGTGGCCACGG
GCCCCCAAGGATGCTTTTTGGACTATGTAGAGAGCTAATGTGAGAAACAA
CAACAACAACAACAACAACAACAACAACAACAACATTACTCTAAATACTA
ACTTGGCGCAAAGCGTCCATCGCCCAGAGGCCCAGCCTCGACGAACCGCT
CATCGCTGTGTTTGCCGACCCGAACTGCTGGTGAGGTGGAGCGGCGGTTC
GCTCTGACCTACATACTGTTTGTTTTTTTTTCCATTTTTTTTTCACAAAC
TAACCCTAACCCTATTGTGATGGATGCCTGCCTCTCCACCACCATCCTGG
CCGCCGGCAGTAAGCTGGAAGAGGCCTACGAGACCGCAAAGGGGGACCCG
GCGTTTCGCGAGGAGGTGGCCTGGTACCGCCGGGAGTACATCGGCGGCCC
CACCCCCATGTACCACGCCAAGCGCCTGACGGAGGAGATGGGTGGTGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6357:5380..7629-

>mRNA_L-elsbetiae_contig6357.15015.1 ID=mRNA_L-elsbetiae_contig6357.15015.1|Name=mRNA_L-elsbetiae_contig6357.15015.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig6357:5380..7629- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGAGGACGTGGTCGTGGAGTGGACGGGGTCGAAGTCAAGGCGCGGAT
CTCAACCGAGGGCACCAACGAGGCCGGAGGACGTGGTCGTGGAGTGGACG
GGGTCGAAGTCAAGGCGCGGATCTCAACCGAGGGCACCAACGAGCTGCCG
CTGCTGCCGCTCCTGCTGCCGCCGTTGCTGCCGCTGCTGCCGCTGCTGCT
GCTGCTGCTGCTACCGCCGCCGCTGACGTGGCGGATACTTCGGGGGCTTC
GGGGGACAGTACGTACCGGAACTGCTCGTAGAGGGCCTCAGCTGCCGCTG
CTGCCGCTCCTGCTGCCGCCGTTGCTGCCGCTGCTGCCGCTGCTGCTGCT
GCTGCTGCTACCGCCGCCGCTGACGTGGCGGATACTTCGGGGGCTTCGGG
GGACAGTACGTACCGGAACTGCTCGTAGAGGGCCTCAGTAATAA
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