mRNA_L-elsbetiae_contig6356.15014.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6356.15014.1
Unique NamemRNA_L-elsbetiae_contig6356.15014.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: D7G5C4_ECTSI (Nascent polypeptide-associated complex subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C4_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 5.360e-86
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 2 
Query:   71 MAARERMIARRFGGDNATRTGGVRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGGAGDDDDDVPDLVENFEEAS 511
            MAARERMIARRFGG NATRTGGVRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAG  PGGE GAGDD+DDVPDLVENFEEAS
Sbjct:    1 MAARERMIARRFGGANATRTGGVRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGNFPGGEAGAGDDEDDVPDLVENFEEAS 147
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: A0A7S2GVT8_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT8_9STRA)

HSP 1 Score: 202 bits (513), Expect = 6.820e-59
Identity = 110/171 (64.33%), Postives = 131/171 (76.61%), Query Frame = 2 
Query:   32 SALKMGEDANSEMMAARERMIARRFGGDNATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGG--------AGDDDDDVPDLVENFEEAS 511
            S L     A+ EM AAR RMI++RFG  + +RTGG   VRRKKK VHKTATSDDKKL +TLK++GVTNIPAIEEVN+F NDG+V+HF  PKVQAS+ ANTYVVSG +ETK L D+LPGIIN+LGQ+NL+ +K+IA  + GG  G        A DDDDDVPDLVENFE+ S
Sbjct:   13 STLPFSSMADEEMSAARRRMISKRFGNQSQSRTGGKGTVRRKKKAVHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTNDGKVVHFSNPKVQASIAANTYVVSGPNETKALTDMLPGIINQLGQDNLEHIKQIAENMQGGAAGPTDPIDAEASDDDDDVPDLVENFEDIS 183
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: A0A8J2WZC4_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZC4_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.380e-52
Identity = 100/158 (63.29%), Postives = 121/158 (76.58%), Query Frame = 2 
Query:   65 EMMAARERMIARRFGGDNATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGGAG------DDDDDVPDLVENFEEAS 511
            ++ AARE+MIARRFGG   +RTGG    RRKKK VHKTATSDDKKL +TLK++GVTNIPAIEEVN+F +DG+VIHF  PKVQAS+ ANTYV+SG +E KKL DLLPGI+N+LG +N+D LK++A  L              D D+DVPDLVENFE+ S
Sbjct:    2 DVAAAREKMIARRFGGAQQSRTGGKGSFRRKKKTVHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTSDGKVIHFSNPKVQASIAANTYVISGPNEAKKLSDLLPGIMNQLGPDNIDHLKQLADNLSNSNKSTSMGEEHDDGDEDVPDLVENFEDVS 159
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: A0A6V1P391_HETAK (Nascent polypeptide-associated complex subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P391_HETAK)

HSP 1 Score: 178 bits (452), Expect = 3.540e-50
Identity = 100/153 (65.36%), Postives = 117/153 (76.47%), Query Frame = 2 
Query:   77 ARERMIARRFGGDNATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGGAGDDDDD-----VPDLVENFEEAS 511
            AR +MIARRFGG   TRTGG   +RRKKK VHKTATSDDKKL TTLK++GVTNIPAIEEVN+FK +GEVIHFV PKVQAS+ ANTYV+SG  +TK+LQDLLPGIIN+LG ++L  LK+IA +     G             VPDLVENFE+A+
Sbjct:    9 ARAKMIARRFGGQTTTRTGGKGSMRRKKKTVHKTATSDDKKLGTTLKKLGVTNIPAIEEVNLFKQNGEVIHFVNPKVQASIAANTYVISGDPQTKQLQDLLPGIINQLGPDSLANLKQIAESYSNAAGXXXXXXXXXXXXXVPDLVENFEDAA 161
[Close]
BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: A0A7S2XW83_9STRA (Nascent polypeptide-associated complex subunit beta n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW83_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.150e-50
Identity = 102/162 (62.96%), Postives = 120/162 (74.07%), Query Frame = 2 
Query:   62 SEMMAARERMIARRFGGDNATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGGAGDDDDDVPD---------LVENFEEAS 511
            +++ AAR++MIARRFGG+  +RTGG   VRRKKK VHKTATSDDKKL TTLK++GVTNIPAIEEVN+FK +GEVIHF  PKVQAS+ ANTYV+SG SETK+LQ+LLPGIIN+LG +NL  LK+IA       G AG                 LVENFEE S
Sbjct:    5 TDVQAARQKMIARRFGGEQHSRTGGKGSVRRKKKAVHKTATSDDKKLGTTLKKLGVTNIPAIEEVNLFKENGEVIHFSNPKVQASINANTYVISGMSETKQLQELLPGIINQLGPDNLANLKQIAEAYANTSGAAGXXXXXXXXXXXXXXXXXLVENFEEVS 166
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: F0YGQ0_AURAN (Nascent polypeptide-associated complex subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGQ0_AURAN)

HSP 1 Score: 178 bits (451), Expect = 5.460e-50
Identity = 98/165 (59.39%), Postives = 125/165 (75.76%), Query Frame = 2 
Query:   65 EMMAARERMIARRFGGDNATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGGAGDD-------------DDDVPDLVENFEEAS 511
            +++AARE+MIARRFGG   +RTGG   +RRKKK VHKTATSDDKKL +TLK++GVTNIPAIEEVN+F  DG+V+HF  PKVQAS+ ANTYVVSG +E+K+L +LLPGI+N+LG +N++ LK+IA ++  G G A +                DVPDLVENFE+ S
Sbjct:    2 DVVAAREKMIARRFGGAQQSRTGGKGSIRRKKKTVHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTADGKVVHFSNPKVQASIAANTYVVSGPNESKQLTELLPGIMNQLGPDNINHLKQIADSMSLGSGNAQESAAVGAGAVGIDXXXXDVPDLVENFEDVS 166
[Close]
BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: F0YK21_AURAN (Nascent polypeptide-associated complex subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK21_AURAN)

HSP 1 Score: 174 bits (441), Expect = 9.940e-49
Identity = 95/151 (62.91%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:   89 MIARRFGGDNATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTL------PGGEGGAGD-DDDDVPDLVENFEEAS 511
            MIARRFGG   +RTGG   VRRKKK +HKTATSDDKKL +TLK++GVTNIPAIEEVN+F +DG+V+HF  PKVQAS+ ANTYVVSG +ETK+L +LLPGI+N+LG +N+D LK+IA  +      P       + DDD+VPDL+ENFE+ S
Sbjct:    1 MIARRFGGAQQSRTGGKGSVRRKKKTMHKTATSDDKKLGSTLKKLGVTNIPAIEEVNLFTSDGKVVHFSNPKVQASIAANTYVVSGPNETKQLTELLPGIMNQLGPDNIDHLKQIADKMSYSNRAPSASSKDDEIDDDEVPDLIENFEDVS 151
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: A0A7S2WUD9_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUD9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 6.980e-47
Identity = 94/162 (58.02%), Postives = 124/162 (76.54%), Query Frame = 2 
Query:   44 MGEDANSEMMAARERMIARRFGGDNATRTGG---VRRKKKNVHKTATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGGAG----DDDDDVPDLVENFEEA 508
            MGE+ ++    AR+RMIA+RFGG    RTGG   +RRKKK VHKTA+SDDKKL+TTLK++GVTNIPAIEEVN+F N G VIHF  PKVQAS+GANTYVVSG +ETK + ++LP I+++LG E+++Q+K+      G  G A     ++D++VP+LV +FEEA
Sbjct:   24 MGEETST----ARQRMIAKRFGGQTQARTGGKGSIRRKKKAVHKTASSDDKKLSTTLKKLGVTNIPAIEEVNLFTNGGNVIHFQNPKVQASIGANTYVVSGPNETKTVAEMLPSIMSQLGSESVEQMKQQYAAAMGAGGPAASADAEEDEEVPELVGSFEEA 181
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: A0A7S0PTD9_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PTD9_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.350e-46
Identity = 97/162 (59.88%), Postives = 121/162 (74.69%), Query Frame = 2 
Query:   59 NSEMMAARERMIARRFGGDNATRTGG---VRRKKKNVHK-TATSDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIA------GTLPGGEGGAGDDDDDVPDLVEN-FEEAS 511
            ++EM AARERMI +RFGG +A +TGG   VRRK K+  + TA   D+KL   LK++G TNIP IEEVN+FK DG+VIHFV PKVQAS+GANTY++SG SETK LQ+LLP I+++LG +NL QL+ IA      G +PG +  A DD+DDVPDLVE  FEE S
Sbjct:    4 DAEMAAARERMIQKRFGGASA-KTGGKGTVRRKNKSASRSTAAQSDQKLGQALKKLGATNIPGIEEVNLFKEDGKVIHFVNPKVQASIGANTYIISGPSETKPLQELLPDIVSQLGMDNLSQLQSIAQQAQASGAIPGADAAADDDEDDVPDLVEGTFEEVS 164
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BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Match: A0A6U1BIA3_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U1BIA3_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.610e-46
Identity = 98/165 (59.39%), Postives = 124/165 (75.15%), Query Frame = 2 
Query:   53 DANSEMMAARERMIARRFGGDNATRTGG---VRRKKKNVHKTATS-DDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQSETKKLQDLLPGIINELGQENLDQLKEIAGTLPGG-------EGGAGDDDDDVPDLVE-NFEEAS 511
            + +SE++AARERMIA+RF G ++T TGG   VRRKKK   +++ + DD KL+TTLK++G TNIP IEEVN+FK DG+VIHFV PKVQAS+ ANTY++SG SETK LQDLLPGI+++LG +NL QL+ +A     G       EG    DDDDVPDLVE NFE+ S
Sbjct:    3 EVSSEILAARERMIAQRF-GKSSTATGGKGTVRRKKKAASRSSGARDDAKLSTTLKKLGATNIPGIEEVNLFKEDGKVIHFVNPKVQASIQANTYIISGPSETKPLQDLLPGIVSQLGMDNLAQLQSLAAAQGAGAGMDAVAEGAEDSDDDDVPDLVEGNFEDVS 166
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6356.15014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C4_ECTSI5.360e-8696.60Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2GVT8_9STRA6.820e-5964.33Nascent polypeptide-associated complex subunit bet... [more]
A0A8J2WZC4_9STRA1.380e-5263.29Nascent polypeptide-associated complex subunit bet... [more]
A0A6V1P391_HETAK3.540e-5065.36Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2XW83_9STRA4.150e-5062.96Nascent polypeptide-associated complex subunit bet... [more]
F0YGQ0_AURAN5.460e-5059.39Nascent polypeptide-associated complex subunit bet... [more]
F0YK21_AURAN9.940e-4962.91Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2WUD9_9STRA6.980e-4758.02Nascent polypeptide-associated complex subunit bet... [more]
A0A7S0PTD9_9STRA2.350e-4659.88Nascent polypeptide-associated complex subunit bet... [more]
A0A6U1BIA3_9STRA3.610e-4659.39Nascent polypeptide-associated complex subunit bet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6356contigL-elsbetiae_contig6356:5781..10636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.9
Seed ortholog evalue4.8e-71
Seed eggNOG ortholog2880.D7G5C4
Preferred nameBTF3L4
KEGG koko:K01527
KEGG Pathwayko04214,map04214
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000578,GO:0001700,GO:0001701,GO:0003002,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005854,GO:0006139,GO:0006351,GO:0006366,GO:0006403,GO:0006457,GO:0006458,GO:0006605,GO:0006612,GO:0006613,GO:0006620,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007317,GO:0007318,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008565,GO:0008595,GO:0009056,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0016070,GO:0016236,GO:0018130,GO:0019438,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030014,GO:0030015,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035282,GO:0042788,GO:0042886,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043900,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045047,GO:0045184,GO:0045595,GO:0045995,GO:0046483,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051082,GO:0051083,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051704,GO:0060281,GO:0060284,GO:0060341,GO:0060548,GO:0060810,GO:0060811,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902875,GO:1903429,GO:1904580,GO:1905879,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.protein transport
EggNOG OGsKOG2240@1,KOG2240@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons5
Model size1529
Cds size474
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.4838157-UTR-L-elsbetiae_contig6356:5780..67921622816701.4838157-UTR-L-elsbetiae_contig6356:5780..6792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 5781..6792 -
1691683750.705378-UTR-L-elsbetiae_contig6356:5780..67921691683750.705378-UTR-L-elsbetiae_contig6356:5780..6792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 5781..6792 -
1622816701.54916-UTR-L-elsbetiae_contig6356:10130..101471622816701.54916-UTR-L-elsbetiae_contig6356:10130..10147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 10131..10147 -
1691683750.767079-UTR-L-elsbetiae_contig6356:10130..101471691683750.767079-UTR-L-elsbetiae_contig6356:10130..10147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 10131..10147 -
1622816701.5644727-UTR-L-elsbetiae_contig6356:10610..106361622816701.5644727-UTR-L-elsbetiae_contig6356:10610..10636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 10611..10636 -
1691683750.7777689-UTR-L-elsbetiae_contig6356:10610..106361691683750.7777689-UTR-L-elsbetiae_contig6356:10610..10636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 10611..10636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.4990144-CDS-L-elsbetiae_contig6356:6792..69561622816701.4990144-CDS-L-elsbetiae_contig6356:6792..6956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 6793..6956 -
1691683750.719239-CDS-L-elsbetiae_contig6356:6792..69561691683750.719239-CDS-L-elsbetiae_contig6356:6792..6956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 6793..6956 -
1622816701.5130434-CDS-L-elsbetiae_contig6356:7459..75161622816701.5130434-CDS-L-elsbetiae_contig6356:7459..7516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 7460..7516 -
1691683750.729955-CDS-L-elsbetiae_contig6356:7459..75161691683750.729955-CDS-L-elsbetiae_contig6356:7459..7516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 7460..7516 -
1622816701.5249314-CDS-L-elsbetiae_contig6356:8091..82081622816701.5249314-CDS-L-elsbetiae_contig6356:8091..8208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 8092..8208 -
1691683750.7417219-CDS-L-elsbetiae_contig6356:8091..82081691683750.7417219-CDS-L-elsbetiae_contig6356:8091..8208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 8092..8208 -
1622816701.5364552-CDS-L-elsbetiae_contig6356:9994..101301622816701.5364552-CDS-L-elsbetiae_contig6356:9994..10130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 9995..10130 -
1691683750.755443-CDS-L-elsbetiae_contig6356:9994..101301691683750.755443-CDS-L-elsbetiae_contig6356:9994..10130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 9995..10130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6356.15014.1prot_L-elsbetiae_contig6356.15014.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6356 6793..10130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6356.15014.1

>prot_L-elsbetiae_contig6356.15014.1 ID=prot_L-elsbetiae_contig6356.15014.1|Name=mRNA_L-elsbetiae_contig6356.15014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MGEDANSEMMAARERMIARRFGGDNATRTGGVRRKKKNVHKTATSDDKKL
TTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPKVQASVGANTYVVSGQS
ETKKLQDLLPGIINELGQENLDQLKEIAGTLPGGEGGAGDDDDDVPDLVE
NFEEASN*
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mRNA from alignment at L-elsbetiae_contig6356:5781..10636-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6356.15014.1 ID=mRNA_L-elsbetiae_contig6356.15014.1|Name=mRNA_L-elsbetiae_contig6356.15014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4856bp|location=Sequence derived from alignment at L-elsbetiae_contig6356:5781..10636- (Laminarionema elsbetiae ELsaHSoW15)
CCACGACCAACACCAATCTCCCCTAGGTACGTGCTCCGGAGGTATTTGTC
TGGCCTCGGCCGTGGTGGTTAATCGTGCACTGCAGCTAACGCCGAGATTG
TGCTTGACCTGAAACCTATGGACGAGTGGACTCTGTGTGTGGATTTGGGG
ATGAGAGGTGCAAGAGCGAGAGAGAGAGGGAGTAACAACAAATCATGTCG
GCATTATATGCCGCTAGAAGGGAAGCTCCCGATGGACCACTTCTGTAGCT
TTTGATGAGCGTGGTTTGAGGCGTGACCCGGGTGATTGAGATTTTCAAGT
TTTCAAAGTGTAAAAAGAGAAGAGAGCGTGGGAGGGCTGCAGTATAACAT
AGCTGCAGTCGGTGAGCTCGTCACTGCCTTGGCCACAAATGTGCCAATGT
GGGATTTCGAAAGTGAATTGTTGATGACTGAGAGCGCACTTGCTTTGCTG
GGACACTGGGGCGTATGTATCATGCTCAATTGTTTCCAGGGGCCTCTGCA
CTCAAAATGGGGGAGGACGCTAATTCAGAGATGATGGCTGCGCGAGAGCG
CATGATCGCTAGGCGGTTTGGAGGAGACAACGCCACCCGGACAGGAGGAG
TACGGAGGAAAAAGAAGAACGTGCACAAGACGGCTACTTCCGGTAAGTGG
GTATTTCTGTGCGCTCGTCGTGTAAAAAACGGAGGAGACGCCTTGCTGCA
ACCTGCAACCCCATCGTGCATCTTGCGAGATCCGCCGCCCCCACCGCGCC
CACCTCATCTCCGCCATGACAACAGTCTATGTATACCTCATGTCTCATTG
CTCCTGCGAGGTCTTGCCTTGCGGCACCTGGGGAAATGTTGTATTGCATC
CATTTATGGTGATGGACTTCGCAGAGTGGCCAGTAAACCGCCCGCAAGCA
GCTGTGATCTGTACTGGGCGCGGCCTCTGTAGGTTGTTCTTCTTTCCTAT
GGGTGTGATGGGTTCGCGGTGAACGTAAGACATACATCGTACAATGCTAC
CAGCGTTCCTTACTTGTTTCCACGCACACGGCACAACAATAGCTCGGGTA
TTAAGTCGTGCTAAAAGCCGAGGTGTTTAACCTTGGTAGGAGTCACACGA
CGCTTTTGGGGGAACGCGCGAGAGAGCTGGGGTATTGTACTCGTGTGAAG
GTGTTGTAAACTACAGTCACCCGCTGTGCACACTCCTGTCACACTTGAGG
GAAACCCTCGCTGCGTAAGAGCAGCTTTTACAGCCTCCAGACAAGACCGT
TTAGGATAGCCAAGTGTATCCGTATAGTGGTGCCTTGCTGCCGTTGGTGT
CCGTAGTTGTTTCTAGCTGATGCCGCGTGCTCTCCAAGCCCCACTCCACG
ATAAAACCTGTACACCTAAATACACATGAAATACGAAGTAGCACACACGA
AACACACAGAGTACACTGGCACGAGCACAATTACGAAAGACAGAAACCAA
CTGCAAAACTACTAGATTTACACCACGAGCCATATCATTACATTTTGCTG
ATTTGTGTCCTACTGGCGTACCCAAGTCGTGTGATCCGTCCCTGGGGGTC
CACAGCTATGTACGTGCATCATGACTCGAACAAATTTCTCAGCTCAGGCA
TATGGTTGGTTCAATATGAGGGATGCCTCCACGTAGCCGGGATATGCGAG
TTTGCCGCTCACCGCATGAGTTGCGTTGACCGCTCCATGCCTGGCAAGAT
TCCCCCGCCGCATGCCCGTGTATGTTGGCTTAGTCTTCGACCTTGTCAAC
GCTAGGAACAACAGCATTATCTTGTACGACACACAACTGGTGTGATCCTA
ATGCCGTCTGACGCCGGTGACTTCGATGTCGATGCTGTAATGCCCTGCTG
ACCGTATCTAGAAACTCTGTGTTTCTTGACGCCCAAGCTGTTATTTTTTC
CATGTCCTTAAAAGTGTAAACCGCCCTGAATACTTACCCCGGTGGGCTTT
TCCGTCTTTTTGAATGTGGACTGGTCGGGTACTACAAATATAAAATCTTG
CTTGCGTCTGCTAAACCAGGCGATGCAGGGTCTGCTTGGTTTTTATACCC
GATAAATTCAGATAGATTGATCACAGCAGCAGTCTACAACCGTGTTTGCC
ATAGTCGATGGCCAAATCAATCGCATTTGTCGATCACGAGCAAGGGACTT
GAAGAGCGCAAGCAAGTATATCATCTCATGTTACACTCAATGAAGCTCTC
GGTCAGATTTGGTACTACCTTTTTCTTCCTGACTCACCCCCGGCGGGCTC
GATGTTGGTGTGCTTCCCAATGGGGGTGGCGGCTCTCTCTCGCCTTTGTC
GTGGTGGCAGCAAAGTATTAAGTTCGAGTCGTGCTGTTGCTATGTTACTT
TTGTTGGTTCGCTTGGAGGTTCGGCCTGTTGAGTTTTGGTCATTGACGAC
CGGATGCTGCGATCGATCGCTGTTGCAGATGACAAGAAGCTCACAACGAC
CCTCAAGAGGATTGGTGTAACCAACATCCCGGCCATCGAAGAGGTGAACA
TGTTCAAGAACGACGGCGAGGTCATCCACTTCGTCGGCCCCAAGGGTGAG
TGGGAAGAGTGGTTGGAATTGACGAGAAATATCGACGAAAGTCTCGAGAT
GGGCTAGATTTTTTTTGGTCACAAAAACGGAAGGTAGTTATTTTTGGCAC
CATCGACAGATCAATCGATGAACTCTCTTCCGCTACGCCGGGAGACTGGG
TGCCTGTTTTACTTTGCTTTGGTCTCCATCAGCCTGGTCCTTGCGGCATC
CACGCGATAAAATCAAAATAGTCACTGTTTGAGACCGAGACACTGGCTGC
TGTACTGCTTTGTACGTTCCCACCTTCCAGCTGTGTGTGTGTTTATATGC
TCCTTACATGTGTAGTCTTGCAGGATTTCCCGAAGGCGAACAACGGCTGG
CTGTATTATTGGCAATAGCTGCACTCGGGACGCCAAACCTCGGGAACGGT
CTCGGTCGATCATGTGCGAGCCTTCTGCCCTTGTGCGTGCGCAGATTCCG
ACAGGATTAATGCTGACGCTGTTGGCTGTTGTTCTGTGTTTCGTCCTGCA
TACCCACCTCCCTCAATTCACCTTCGCGTCCTTGTTTCTGTGTGTTTTTT
GTGTCCGATCCACTTTACAGTCCAAGCATCAGTGGGCGCGAACACGTACG
TCGTCAGCGGACAGTCGGAGACGAAGAGTGAGTACAGTACAGTAGCACTT
CTGTGTGTGAATCAAGAGCCGTGTGTAACTGTCTGTATTTCCTAGTTGTT
TATTTCTAGATCCATCCGCCCCACGTAGCACCGTTTTTTTTGTTGCCTCA
CTGCTTTAGACTTCTGACCCCATGTATTGAAGATGTATTACTCCCGGTGT
AGCTATAACCATTAAGGTGGCTCGAGGGTTCCCTGGTATGTATGATAGCT
CCTGGGTCGGGTCTGGTTGAGTCTTGTCCTTGCAGCGGGCGCGATAGTTA
CCAGAGCCGCACGCTTCCGCTTCCCAGTCAGGCAGCGGTGCTTCCATTTT
GACGCCGCGCGGTTTATTTATGCACAAGATGTTATACGTGTCTCATCTCG
CTCTACTGATGTTTTACTGCTGCCATAAGGGATTCATGTTGCCCCTCGAT
GTCGCCAAATCGGTGTCACGCCATGTCCAACATCACAACACCATTACACC
ATGCTTGCACCCTTCGTAACGCAACAACAGAGTTGCAGGACCTGCTTCCG
GGCATCATCAACGAGCTGGGACAGGAGAACCTTGACCAGCTGAAGGAGAT
CGCGGGCACCCTCCCGGGGGGTGAAGGGGGCGCGGGGGATGACGACGACG
ATGTGCCCGACCTCGTGGAGAACTTCGAGGAGGCCTCCAACTAACTCAAA
CCACGAGCCAACTCCTCCACTACACCGCGTCAAACTGTAGCTTGCTTGCT
GTCGGTGTTGCCCCTTGGGATCGGGTGTGCGGGAGGGGGGGGGTAGGGAC
GAACATTTGGGGGAGGTTACCAGCCCCATTGGTTGTTTGTTGGGAGTCTT
TCGACAGTAGCGTAGTTGTTCTTTTTCTGAGGGCGCACCGTTCTTCGGGG
GTGTAGTCAACACCCGCACGTTGGTGTGCTGCCTCTCGGCATGCGGGCTA
CGGCAGCAGTACCCACGTAGTTTTGGTGTTGGATGCGTGCGGCCTAGTTA
GAGAAATGGGCGGGGAAGCCAAAGCTTGGATGGTGAAGAAAGACTAAATA
ACCAAGACCCAGCTGCCTGGCTGATCTGTGTTTTGGCGTCAAACCTGGAT
ATGTTCCGTGTGCAGTGGGCAGATTCAAGAATCGCCCTTGACCCCCCACA
ACACGTCCTGCCCGTACGCTTTACTAACTTAACTGTATCGAATTCATGGA
TTTTGCGTATCCGTGTTCAGATGTACGAAACGCTGCTGTGCGCATCACAT
ACATGATGTACTAGATACATGCTCAGTTTTTGGCGGAGAGCCCGACTAAG
TACCTGCATGCGTTTATTGCGCTACGTGGGCCAAATGCGGCAACGAAGTG
AAGTACAGCGGTACCTTCCCGCGCGGACAGTATGCACGCGGAGCGAGAGA
CCCCGGCCTACAGATAAAACCCAGCCGCACAGGTCGCAAAACGCAACACA
TCGTAGTTCCCGACACAACAGCGGGCGATAGCTGCTTAGACCGTAACGAG
GGAGCTTGAAATCATCTCAAGCTACACGGAGATTCCGCAGTATCGCAAAA
CTCGTATTGTGGACCGAGATCGGATTTTCAGATCGTGGTGCTTCGCGCGA
ATGCTTCTGTGGGGACGGGACAGATAGAAAAAAAGGGCAATCGGTTGGAG
AGACCCAAGCTAAGAGCTTGGGAAAAATTCGCGAGTGGTACACGGTAGAG
ATGCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6356:5781..10636-

>mRNA_L-elsbetiae_contig6356.15014.1 ID=mRNA_L-elsbetiae_contig6356.15014.1|Name=mRNA_L-elsbetiae_contig6356.15014.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig6356:5781..10636- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGAGGACGCTAATTCAGAGATGATGGCTGCGCGAGAGCGCATGAT
CGCTAGGCGGTTTGGAGGAGACAACGCCACCCGGACAGGAGGAGTACGGA
GGAAAAAGAAGAACGTGCACAAGACGGCTACTTCCGATGGGGGAGGACGC
TAATTCAGAGATGATGGCTGCGCGAGAGCGCATGATCGCTAGGCGGTTTG
GAGGAGACAACGCCACCCGGACAGGAGGAGTACGGAGGAAAAAGAAGAAC
GTGCACAAGACGGCTACTTCCGATGACAAGAAGCTCACAACGACCCTCAA
GAGGATTGGTGTAACCAACATCCCGGCCATCGAAGAGGTGAACATGTTCA
AGAACGACGGCGAGGTCATCCACTTCGTCGGCCCCAAGGATGACAAGAAG
CTCACAACGACCCTCAAGAGGATTGGTGTAACCAACATCCCGGCCATCGA
AGAGGTGAACATGTTCAAGAACGACGGCGAGGTCATCCACTTCGTCGGCC
CCAAGGTCCAAGCATCAGTGGGCGCGAACACGTACGTCGTCAGCGGACAG
TCGGAGACGAAGATCCAAGCATCAGTGGGCGCGAACACGTACGTCGTCAG
CGGACAGTCGGAGACGAAGAAGTTGCAGGACCTGCTTCCGGGCATCATCA
ACGAGCTGGGACAGGAGAACCTTGACCAGCTGAAGGAGATCGCGGGCACC
CTCCCGGGGGGTGAAGGGGGCGCGGGGGATGACGACGACGATGTGCCCGA
CCTCGTGGAGAACTTCGAGGAGGCCTCCAACTAAAGTTGCAGGACCTGCT
TCCGGGCATCATCAACGAGCTGGGACAGGAGAACCTTGACCAGCTGAAGG
AGATCGCGGGCACCCTCCCGGGGGGTGAAGGGGGCGCGGGGGATGACGAC
GACGATGTGCCCGACCTCGTGGAGAACTTCGAGGAGGCCTCCAACTAA
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