mRNA_L-elsbetiae_contig6356.15013.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6356.15013.1
Unique NamemRNA_L-elsbetiae_contig6356.15013.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: D7G5C3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C3_ECTSI)

HSP 1 Score: 448 bits (1152), Expect = 2.560e-151
Identity = 235/298 (78.86%), Postives = 253/298 (84.90%), Query Frame = 2
Query:   53 MVGLDQDQVRRGASALLKHIKNSAVGKSTLIEDEGEVVLAQISLHKIPGDVSAKPIPIAIPHSLRKQEDCDMCLIVKDNAKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNLGDLPPVPPADEARAAKXXXXXXXXXXGVGDK-------KKRKPRPLIRQQLNKLKEEAKAE 925
            MV  D+ QVRR A ALLKH+ +SA GK +LIEDEGEVVLAQISLHKIPGDV AKP+PIAIPH LRK+EDCDMCLIVKDNAK WIKE  E EP+EGLTK+IKLDKLRTQYKDFKDRR+LLSQ+DLFLADDRILPMLTKALGKTFLK KKQPVPIKLERR+S AKQIARARDSAFLVGS+GDCW VKLANT+MTE QVVENLM G+ AVVEKIPRKWKNVKAINIKCS+SVALPVYSN+GDLPP P A +A  A           G G +       KKRKPRPLIRQQLNKLKEEAKAE
Sbjct:    1 MVSFDEAQVRRAARALLKHVNSSAAGKQSLIEDEGEVVLAQISLHKIPGDVKAKPVPIAIPHPLRKREDCDMCLIVKDNAKVWIKEMAEKEPVEGLTKIIKLDKLRTQYKDFKDRRELLSQFDLFLADDRILPMLTKALGKTFLKVKKQPVPIKLERRASFAKQIARARDSAFLVGSHGDCWAVKLANTSMTEDQVVENLMTGVAAVVEKIPRKWKNVKAINIKCSHSVALPVYSNIGDLPPAPSAKKATVA---GKEEAAGEGEGKEPNSHSQAKKRKPRPLIRQQLNKLKEEAKAE 295          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: A0A7S2CVK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVK6_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.240e-59
Identity = 110/243 (45.27%), Postives = 155/243 (63.79%), Query Frame = 2
Query:   38 TASTTMVGLDQDQVRRGASALLKHIKNSAVGKSTLIEDEGEVVLAQISLHKIPGDVSAKPIPIAIPHSLRKQEDCDMCLIVKDNAKAWIKETL-ENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNL 763
            T +T    L+   +     ALL   K  A  +  L   + E +L QI+L +IPG+ S KPI +++PH +    DC MCL +K   K  +K  L E+ P+EGL K+I LDKLRT Y  F  RR+LL+ YDLFLAD+RILPML KALGKTF   KKQP+P+ + R  SL  ++ RARDS  L+   G C  V + NT MT  ++V N++A  ++ +E IPRKWKN++AI +K ++S++LP+++ L
Sbjct:   50 TQTTKRDNLNTHTITCAVKALLAFHKKKAESERKLPGADDERILIQITLQRIPGNSSPKPIQLSVPHPIHGDSDCQMCLFIKKEDKPLVKSLLMEDNPVEGLAKIITLDKLRTSYARFSQRRELLASYDLFLADERILPMLCKALGKTFFSRKKQPIPLCVTRHESLPHRVRRARDSTSLIIPSGTCVAVIVGNTNMTPKELVANIVAAASSAIEHIPRKWKNIQAIQVKTADSMSLPIFNKL 292          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: A0A7S2SVD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVD8_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.500e-54
Identity = 116/224 (51.79%), Postives = 146/224 (65.18%), Query Frame = 2
Query:   95 ALLKHIKNSAVGKSTLIEDEGEVVLAQISLHKIPGDVSAKPIPIAIPHSLRKQEDCDMCLIVKDNAKAWIKETL-ENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNL 763
            ALL + + +      L+  E E V   I L K+P   S KPI + + H L    DCDMCL +K   K W+KE L E++P+ GL KVI LDKLRT Y  F+ RR+L+S YDLFLADDRILPML K LGKTF   KKQPVP+++ RR +L + I RARDS +LV   G+   V + NT+MT  Q+VENL+A     V+ IPRKW NV+AI IK  +SVALPV + L
Sbjct:    5 ALLSYHEKAHAAGGDLLGSE-ERVHVTIVLKKVPSKASPKPIRLPLAHPLWSL-DCDMCLFMKTEDKPWVKELLMESKPVPGLKKVITLDKLRTSYARFERRRELISTYDLFLADDRILPMLCKTLGKTFFSRKKQPVPVRI-RRGALPQTIQRARDSTYLVLGGGNNVSVCIGNTSMTRKQLVENLLAATNEAVDHIPRKWANVQAIYIKSDSSVALPVLNKL 225          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: A0A6G0XX31_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XX31_9STRA)

HSP 1 Score: 191 bits (485), Expect = 7.100e-51
Identity = 103/236 (43.64%), Postives = 154/236 (65.25%), Query Frame = 2
Query:   62 LDQDQVRRGASALLKHI--KNSAVGKSTLIEDEGEVVLAQISLHKIPGDVSAKPIPIAIPHSLRKQEDCDMCLIVKDNAKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNL 763
            LD +QVR+   AL + I  K S   K  L+ED  +V+    + + +P   S KP+PIA+P+++R   D ++CL VKD+ K  IK  L+N+P+ GLTKV+ + KL+  +  FKD+R+L + YDLFLADDRILP L   LGKTF  AKKQP  + +  + +++  I R      +  S G C+ VK+A+  M   +++EN++ G   +VE +P+KWKN+K+INIK S+SVALP+Y++L
Sbjct:    5 LDAEQVRKAVVALKQFIQKKKSQNSKQALVEDN-QVIQIIFTRNTVPAKESLKPVPIALPNNIRG--DGEVCLFVKDSDKDRIKAHLKNDPIPGLTKVMPVKKLKKNFSQFKDKRELKAAYDLFLADDRILPYLKSLLGKTFFDAKKQPTTVNVTGKKNISDHIRRVLAGTEMFVSPGPCFNVKIAHDGMDTEKIIENIIEGTKNIVEHVPKKWKNIKSINIKTSDSVALPIYNSL 237          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: W7TFQ3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ3_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.720e-49
Identity = 109/254 (42.91%), Postives = 154/254 (60.63%), Query Frame = 2
Query:   62 LDQDQVRRGASALLKH------IKNSAVGKSTLIEDE-GEVVLAQISLHKIPGDVSAKPIPIAIPHSLR-----KQEDCDMCLIVKDNAKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKL--------ERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNL 763
            +D  Q  R   ALL+H      +  S   K  L+  E G+ +L QI+L KIP  VS KP+P+++PH L        ED  +CLIVK++ K  ++  L    M+G+ +V+ L +LRT YK+F++RRQL   +DLFL DDRILP+L KALGKTF   KK PV +KL        +  +++ K+I  A+    L  ++G+C  VK+A T+    + V N++AGI A VE  P KWKNV AI++K S+SVALP+Y  L
Sbjct:   54 VDATQATRAVEALLQHNARHQALVASKKSKQDLLASEAGDYILIQIALAKIPERVSPKPVPLSLPHPLHGSGGDDDEDHAVCLIVKESDKGKVQRALNAMKMDGVREVVGLQELRTDYKEFQERRQLRDAFDLFLVDDRILPLLGKALGKTFFSKKKHPVALKLGGLLSSNPQAMATVGKRIIAAQQRTHLYRNHGNCLSVKVAKTSFRPAEAVANVLAGIEAAVEATPGKWKNVMAISVKTSSSVALPLYQRL 307          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: A0A024G4U6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4U6_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.580e-49
Identity = 99/233 (42.49%), Postives = 146/233 (62.66%), Query Frame = 2
Query:   62 LDQDQVRRGASALLKHIKNSAVG--KSTLIEDEGEVVLAQISLHKIPGDVSAKPIPIAIPHSLRKQEDCDMCLIVKDNAKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVY 754
            +D+ QVR+   AL  +I+       K  LIE E + +   I   KIP   S KPIPI +PH++RKQ +  MCL+VKD  K  +K+ L+ +P+EGLTKV+ L KLR  +  F+DRR L+  YDLFLADDRILP L   +GK F++ KKQPVP+++ R ++  + +       F+  S G C  +++A+  M+  Q+VEN+M G+      I +KW  ++AI++K + SVALP+Y
Sbjct:    9 MDEAQVRKAVIALQIYIEKQKKDRTKQQLIE-ENQSLSCIIQRKKIPSKASLKPIPIELPHAIRKQPE--MCLLVKDTDKERVKKILKEDPVEGLTKVMTLKKLRKNFTRFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-ANFTQNLRAVEKQTFMFVSCGACMNIRIAHFGMSVDQIVENIMVGMQRCASLIGKKWNGIQAIHLKTNESVALPIY 237          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: F0WX21_9STRA (Uncharacterized protein AlNc14C340G10778 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WX21_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.380e-47
Identity = 101/248 (40.73%), Postives = 149/248 (60.08%), Query Frame = 2
Query:   62 LDQDQVRRGASALLKHIKNSAV--GKSTLIEDEGEVVLAQISLHKIPGDVSAKPIPIAIPHSLRKQEDCDMCLIVKDNAKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSN---LGDLPPVPPA 790
            +D+ QVR+   AL  + +   +   K  LIE E   +   I   K+P   S KPIPI +PH +RKQ +  MCL+VKD  K  +K+ L+ +P+EGLTKV+ L KLR  +  F+DRR L+  YDLFLADDRILP L   +GK F++ KKQPVP+++ R +   + +       F+  S G C  V++A+  M+  ++VEN+M G+      I +KW  ++AI++K + SVALP+Y +      LP +P A
Sbjct:    9 MDEAQVRKAVLALQIYTEKQKLEQNKQPLIE-ENVSLSCIIQRKKVPSKASLKPIPIELPHGIRKQSE--MCLLVKDTDKDRVKKILKEDPVEGLTKVMTLKKLRKNFARFEDRRTLVGAYDLFLADDRILPYLKSPVGKVFIRVKKQPVPVRISR-AKFTQNLRAVEKQTFMFVSCGACMNVRIAHLGMSVDEIVENIMIGMQRCASLIGKKWNGIQAIHLKTNESVALPIYYSPISFTKLPAIPSA 252          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: A0A7S0RBE1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RBE1_9CHLO)

HSP 1 Score: 176 bits (446), Expect = 2.240e-47
Identity = 99/238 (41.60%), Postives = 148/238 (62.18%), Query Frame = 2
Query:   62 LDQDQVRRGASALLKHIKNSAVGK--STLIEDEGEVVLAQISLHKIPGDVSAKPIPIAIPHSLRKQEDCDMCLIVKDN---AKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSN 760
            L + QVR+  +ALLKHI   + GK  S L ED+ ++    ++L + P   S KPI I IP+ L   E  ++CL VKD+        KE +++    G+ KVI + KL+  Y  F+ +R+L  QYDLFLADDRILP L K +GKTF K KKQP+P+ L+++     QI  A ++ +   S G C  V++A ++  E ++V+N+MA    + + +PRKWKNV+A+ +K + SVALP+YS+
Sbjct:    7 LSKSQVRKAVAALLKHIAKQSAGKKNSQLFEDD-QIFNLVVALKRTPDQASNKPIRIEIPNPLHSAEGAEVCLFVKDHKGEGHKAAKERIKSMANSGVAKVIGMSKLKANYFTFEAKRKLCDQYDLFLADDRILPSLPKLIGKTFFKKKKQPIPVDLKKKD-WGLQIKMAVNATYTFQSEGSCMNVRVARSSQEEDEIVDNIMAVAEQLGDVVPRKWKNVQALYLKTNESVALPIYSS 242          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: A0A7J7QLN2_9CHLO (Ribosomal protein L1 n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7QLN2_9CHLO)

HSP 1 Score: 176 bits (445), Expect = 2.480e-47
Identity = 104/247 (42.11%), Postives = 153/247 (61.94%), Query Frame = 2
Query:   59 GLDQDQVRRGASALLKHIKNSAVGKSTLIEDEGEVVLAQISLHKIP-GDVSAKPIPIAIPHSLRKQEDCDMCLIVKDN-------AKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNLGDLP 775
            GL   Q+++  S+LLK + ++   KST + +E EV    +SL K P G    KPI IAIPH L   E  ++CL VKD+       AK  + + L+N    G+ KV+ L KLRT+Y+  + +RQL S YDLFLAD+RI+P L K +GK+F K KKQPVP+ + R +   KQ+  A  + ++   +G C  V++A ++M + Q+V+N MA +  VV  +P+KW NV+A+ +K S SV+LPVY  L + P
Sbjct:    5 GLRSQQLQKAVSSLLKFVGDA--DKSTQLLEEDEVFHLVVSLKKAPVGPRKDKPIRIAIPHPLWTAEGAEVCLFVKDHKGEGHKAAKQRLAKLLKNG---GVAKVVGLSKLRTKYESHEAKRQLCSSYDLFLADERIIPSLPKLIGKSFFKRKKQPVPVDM-RAADFPKQVQAALAATYMTPPHGTCVSVRIARSSMEQQQIVDNAMAALRGVVGNVPKKWANVQAVYLKTSESVSLPVYQVLPEEP 245          
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Match: I0Z8Y8_COCSC (Ribosomal protein L1 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z8Y8_COCSC)

HSP 1 Score: 174 bits (440), Expect = 1.300e-46
Identity = 91/247 (36.84%), Postives = 154/247 (62.35%), Query Frame = 2
Query:   47 TTMVGLDQDQVRRGASALLKHIKNSAVGKSTLIEDEGEVVLAQISLHKIPGDVSA-KPIPIAIPHSLRKQEDCDMCLIVKDN---AKAWIKETLENEPMEGLTKVIKLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQPVPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENLMAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNLGDLP 775
            +T  GL +DQ+R+  +ALLKH++      + L+E+E  + L  I+L K P +    KP+ + +PHSL   +  ++CLIVKD+        K+ ++ E +  ++KV+ + KLRT+Y+  + +R L + YDLFLAD+R+LP L K LGKTF K KKQP+P+ L  +   A+Q+ +A ++ ++  + G C  +++A ++ +  Q  EN++  I   +  IP+KW NV+A+++K + S ALP+Y  L + P
Sbjct:    2 STTPGLQEDQIRKAVAALLKHVEKQQAKANELLEEEELLYLVIIALKKTPQEARKDKPLRLPLPHSLYDFDGAEVCLIVKDHKGEGHKAAKQRVKEEKLAKVSKVVGVSKLRTKYESAEAKRALCTAYDLFLADERVLPSLPKLLGKTFFKKKKQPIPVDLTGKD-WARQVRKATEATYMHHTGGTCINIRVARSSFSAEQCTENIVEAIKGALPHIPKKWNNVQALHVKTATSAALPIYQTLPEQP 247          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6356.15013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C3_ECTSI2.560e-15178.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CVK6_9STRA3.240e-5945.27Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SVD8_9STRA1.500e-5451.79Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6G0XX31_9STRA7.100e-5143.64Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W7TFQ3_9STRA3.720e-4942.91Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A024G4U6_9STRA4.580e-4942.49Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WX21_9STRA1.380e-4740.73Uncharacterized protein AlNc14C340G10778 n=1 Tax=A... [more]
A0A7S0RBE1_9CHLO2.240e-4741.60Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7J7QLN2_9CHLO2.480e-4742.11Ribosomal protein L1 n=2 Tax=Scenedesmaceae TaxID=... [more]
I0Z8Y8_COCSC1.300e-4636.84Ribosomal protein L1 n=2 Tax=Coccomyxa TaxID=41891... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6356contigL-elsbetiae_contig6356:2489..5164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue5.2e-124
Seed eggNOG ortholog2880.D7G5C3
Preferred nameRSL1D1
KEGG koko:K11824,ko:K14775
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042981,GO:0043043,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0090342,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000772
EggNOG free text desc.regulation of cellular senescence
EggNOG OGsKOG1685@1,KOG1685@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Ec32 ortholog descriptionRibosomal protein L1-like
Ec32 orthologEc-14_006980.1
Exons2
Model size1740
Cds size1122
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6356.15013.1prot_L-elsbetiae_contig6356.15013.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6356 2541..4598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.4207616-UTR-L-elsbetiae_contig6356:2488..25401622816701.4207616-UTR-L-elsbetiae_contig6356:2488..2540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 2489..2540 +
1691683750.655848-UTR-L-elsbetiae_contig6356:2488..25401691683750.655848-UTR-L-elsbetiae_contig6356:2488..2540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 2489..2540 +
1622816701.4512584-UTR-L-elsbetiae_contig6356:4598..51641622816701.4512584-UTR-L-elsbetiae_contig6356:4598..5164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 4599..5164 +
1691683750.6914062-UTR-L-elsbetiae_contig6356:4598..51641691683750.6914062-UTR-L-elsbetiae_contig6356:4598..5164Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6356 4599..5164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816701.4309783-CDS-L-elsbetiae_contig6356:2540..28341622816701.4309783-CDS-L-elsbetiae_contig6356:2540..2834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 2541..2834 +
1691683750.671987-CDS-L-elsbetiae_contig6356:2540..28341691683750.671987-CDS-L-elsbetiae_contig6356:2540..2834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 2541..2834 +
1622816701.440827-CDS-L-elsbetiae_contig6356:3770..45981622816701.440827-CDS-L-elsbetiae_contig6356:3770..4598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 3771..4598 +
1691683750.681682-CDS-L-elsbetiae_contig6356:3770..45981691683750.681682-CDS-L-elsbetiae_contig6356:3770..4598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6356 3771..4598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6356.15013.1

>prot_L-elsbetiae_contig6356.15013.1 ID=prot_L-elsbetiae_contig6356.15013.1|Name=mRNA_L-elsbetiae_contig6356.15013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
MVGLDQDQVRRGASALLKHIKNSAVGKSTLIEDEGEVVLAQISLHKIPGD
VSAKPIPIAIPHSLRKQEDCDMCLIVKDNAKAWIKETLENEPMEGLTKVI
KLDKLRTQYKDFKDRRQLLSQYDLFLADDRILPMLTKALGKTFLKAKKQP
VPIKLERRSSLAKQIARARDSAFLVGSYGDCWVVKLANTAMTEGQVVENL
MAGITAVVEKIPRKWKNVKAINIKCSNSVALPVYSNLGDLPPVPPADEAR
AAKEEEAGGGGESGVGDKKKRKPRPLIRQQLNKLKEEAKAEKAKAAEEAV
AVGGGGVKSKKSKKRAASENEEPNNGAADEGEGEDDDSGREAANAKKSKG
KSKSPKAKAAVKARGKRRRTAAA*
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mRNA from alignment at L-elsbetiae_contig6356:2489..5164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6356.15013.1 ID=mRNA_L-elsbetiae_contig6356.15013.1|Name=mRNA_L-elsbetiae_contig6356.15013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig6356:2489..5164+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCTGCTCAACTCGTCTACCTCCCCACCCCTTTACACTGCCTCTACGA CAATGGTCGGTCTTGACCAGGATCAAGTAAGACGCGGGGCTAGCGCCTTG CTGAAGCACATCAAAAACTCAGCGGTCGGGAAATCGACCTTGATTGAGGA TGAAGGAGAGGTGGTGCTGGCGCAAATTTCGCTCCACAAGATTCCAGGCG ACGTATCGGCGAAGCCGATACCGATAGCTATTCCGCACTCTCTGCGGAAA CAAGAGGACTGCGACATGTGCCTCATCGTGAAGGACAACGCAAAAGCATG GATTAAGGAGACTTTGGAGAATGAGCCAATGGAAGGCCTTACCAAGGTAA TTGAAACTGGACGGGACTGTCGTTTTTATCGCACGCTTTCTCTCTCATCT CTCTCTTTCTCTCTCTCTCGGTCGCGGGGGGGCGTGCTCTCAGCGTGGAA GCAACCGCGACTGTTGAATACCAACAATCTTATGTCCCCTTTGTATGTAG AGAGTGGTCGATAAAAACACCTTGCTTGAATGGTTGCCGTCTCCTGAGAG CGTAGTTGAATATTGCTTTCTCTCCTCTCTCCGCACTCCACACACACCAC CCACGCATCATCGTCTTCGACCCCGCTTCGAGGTTCCTTCATATCAGTGC GGCCTGTTACCTCACAATTCTCATGCGTTATGGCAGAGCCATATTGCCGA AAAAGTGGCCTCCAGATGTACGACCAATGTGTTGTTTCGTGGTGGGTGTC ATGTACGTAATGATCGCAGCAAGATACGCACATGTTGCACGTACAACAGT TGAGTACCACGACGTCGCTTGGCCAAACCTTAAGCCTCTCGGGTTGGACA ACGCTACAGCAACATCGCTTGGAATTTTGATTTCGGTACATCATTCGTGC TTATCTCCCTGGGCCAGTCTACGCCCTTTAATTCCCAACGAGCCCCAACA TTATTTGAACGGGGAAACGTTTGGTTCTATGCTTTGTAACTCAAGCCCAT ACCCAATTTACTACTTCTGGATGAGGGTATCTTCTCTTTTACTCTTAGCA GCTGAACTGCAATATCGGCCGTTGCAACAAGCGCTGGTTCGTGTTTAGGC ACTCCAACCTGTATCTGGCAACACTTATTTTCCTGTTTTTGACACACGCC AGCTTCCGCCCTGCCCTGTGCGAGTGGTTCACCCCACATTGCATGACTTC CTGCACCAGCGTTCGTTCGCCCCCCCTGACCCATCCCCTCACGCCTTTGC CCTGCTTTCGAAATGCGCCCTCCTTGCCGCAGGTAATTAAACTGGACAAA CTTCGTACACAGTACAAGGACTTCAAAGACCGGCGACAGTTGCTGTCGCA GTACGACCTCTTCCTCGCAGACGACCGCATCCTGCCGATGCTCACCAAGG CGCTCGGGAAGACGTTCCTCAAGGCCAAGAAGCAGCCGGTGCCGATAAAG CTCGAACGCCGATCGAGCCTCGCCAAGCAGATCGCCCGCGCGAGAGACAG CGCCTTCTTGGTGGGGTCGTACGGGGACTGCTGGGTCGTAAAGCTGGCCA ACACAGCCATGACGGAGGGCCAGGTGGTGGAAAACCTCATGGCTGGAATC ACGGCGGTGGTGGAGAAGATCCCTCGGAAATGGAAGAACGTCAAGGCCAT CAACATCAAGTGCTCCAACTCGGTGGCGCTGCCGGTGTACAGCAATCTCG GCGACCTCCCTCCCGTACCTCCCGCAGACGAGGCCAGAGCGGCAAAGGAG GAGGAGGCGGGGGGGGGCGGGGAGTCTGGCGTCGGCGATAAAAAGAAGCG CAAGCCCAGGCCGCTCATCCGGCAGCAGCTCAACAAACTCAAGGAGGAAG CCAAGGCCGAGAAGGCCAAGGCGGCAGAAGAAGCGGTGGCGGTAGGCGGC GGCGGGGTTAAAAGTAAGAAGAGTAAGAAGAGGGCAGCTTCGGAGAACGA GGAGCCCAACAATGGCGCGGCGGACGAGGGCGAGGGCGAGGATGATGACA GCGGGCGCGAGGCGGCGAATGCGAAGAAGTCGAAGGGAAAGTCGAAGTCG CCCAAGGCGAAGGCTGCAGTGAAGGCACGGGGGAAGAGGCGACGGACGGC TGCTGCATGATGTGTTGCATGATCAGATTACGCTGGTGTATCGGTCGTGT GCAGGGTCTAATGAGTAGAGTAGCAGAAATTTGTCAGGCAGGCACCAGAC GGCTGGCGTATTGTAGTTTTAGGGCTTCTTCCCCAGAGGCAATTTTCGGC CAGTTCCCGGGTTTTGCTTTCGCCTCCTTTTCTCTCTTGCCCGACGGGGT CCTCTTATCCTCTCCTGTCGTGTAGCCAACCCTAGTGGTGTAGTTTCTCC GGCAGTAGGTGACGATGGGTATATTCAAGTTGGGATGTTTTGTTATTCGG AAGCCGCATAGCTTGCCCGGCATCACTTGCCCTCTACTTGGAAATATAGA TTGCTTGGTGGGCTAGCGCCGACCTACGTGCGCGGGCTGTTTTTCGTGCG CGAGGGTCATGGGTAGTGCGCGTGCGCTTGCTGCCTCTCATGTCGGGCTC TTTGAAGCGTCGAAGAGGAGGAAATTCGACATGGTCTTGTAGTTCCCCCT TTCGCTGGAGCGTTAAGTGTAAGATTTGCTATTGCACTCTGTTCGTCATG CATGTCCAGCCCCCTTTGGAGAAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6356:2489..5164+

>mRNA_L-elsbetiae_contig6356.15013.1 ID=mRNA_L-elsbetiae_contig6356.15013.1|Name=mRNA_L-elsbetiae_contig6356.15013.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig6356:2489..5164+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGGTCTTGACCAGGATCAAGTAAGACGCGGGGCTAGCGCCTTGCT
GAAGCACATCAAAAACTCAGCGGTCGGGAAATCGACCTTGATTGAGGATG
AAGGAGAGGTGGTGCTGGCGCAAATTTCGCTCCACAAGATTCCAGGCGAC
GTATCGGCGAAGCCGATACCGATAGCTATTCCGCACTCTCTGCGGAAACA
AGAGGACTGCGACATGTGCCTCATCGTGAAGGACAACGCAAAAGCATGGA
TTAAGGAGACTTTGGAGAATGAGCCAATGGAAGGCCTTACCAAGATGGTC
GGTCTTGACCAGGATCAAGTAAGACGCGGGGCTAGCGCCTTGCTGAAGCA
CATCAAAAACTCAGCGGTCGGGAAATCGACCTTGATTGAGGATGAAGGAG
AGGTGGTGCTGGCGCAAATTTCGCTCCACAAGATTCCAGGCGACGTATCG
GCGAAGCCGATACCGATAGCTATTCCGCACTCTCTGCGGAAACAAGAGGA
CTGCGACATGTGCCTCATCGTGAAGGACAACGCAAAAGCATGGATTAAGG
AGACTTTGGAGAATGAGCCAATGGAAGGCCTTACCAAGGTAATTAAACTG
GACAAACTTCGTACACAGTACAAGGACTTCAAAGACCGGCGACAGTTGCT
GTCGCAGTACGACCTCTTCCTCGCAGACGACCGCATCCTGCCGATGCTCA
CCAAGGCGCTCGGGAAGACGTTCCTCAAGGCCAAGAAGCAGCCGGTGCCG
ATAAAGCTCGAACGCCGATCGAGCCTCGCCAAGCAGATCGCCCGCGCGAG
AGACAGCGCCTTCTTGGTGGGGTCGTACGGGGACTGCTGGGTCGTAAAGC
TGGCCAACACAGCCATGACGGAGGGCCAGGTGGTGGAAAACCTCATGGCT
GGAATCACGGCGGTGGTGGAGAAGATCCCTCGGAAATGGAAGAACGTCAA
GGCCATCAACATCAAGTGCTCCAACTCGGTGGCGCTGCCGGTGTACAGCA
ATCTCGGCGACCTCCCTCCCGTACCTCCCGCAGACGAGGCCAGAGCGGCA
AAGGAGGAGGAGGCGGGGGGGGGCGGGGAGTCTGGCGTCGGCGATAAAAA
GAAGCGCAAGCCCAGGCCGCTCATCCGGCAGCAGCTCAACAAACTCAAGG
AGGAAGCCAAGGCCGAGAAGGCCAAGGCGGCAGAAGAAGCGGTGGCGGTA
GGCGGCGGCGGGGTTAAAAGTAAGAAGAGTAAGAAGAGGGCAGCTTCGGA
GAACGAGGAGCCCAACAATGGCGCGGCGGACGAGGGCGAGGGCGAGGATG
ATGACAGCGGGCGCGAGGCGGCGAATGCGAAGAAGTCGAAGGGAAAGTCG
AAGTCGCCCAAGGCGAAGGCTGCAGTGAAGGCACGGGGGAAGAGGCGACG
GACGGCTGCTGCATGAGTAATTAAACTGGACAAACTTCGTACACAGTACA
AGGACTTCAAAGACCGGCGACAGTTGCTGTCGCAGTACGACCTCTTCCTC
GCAGACGACCGCATCCTGCCGATGCTCACCAAGGCGCTCGGGAAGACGTT
CCTCAAGGCCAAGAAGCAGCCGGTGCCGATAAAGCTCGAACGCCGATCGA
GCCTCGCCAAGCAGATCGCCCGCGCGAGAGACAGCGCCTTCTTGGTGGGG
TCGTACGGGGACTGCTGGGTCGTAAAGCTGGCCAACACAGCCATGACGGA
GGGCCAGGTGGTGGAAAACCTCATGGCTGGAATCACGGCGGTGGTGGAGA
AGATCCCTCGGAAATGGAAGAACGTCAAGGCCATCAACATCAAGTGCTCC
AACTCGGTGGCGCTGCCGGTGTACAGCAATCTCGGCGACCTCCCTCCCGT
ACCTCCCGCAGACGAGGCCAGAGCGGCAAAGGAGGAGGAGGCGGGGGGGG
GCGGGGAGTCTGGCGTCGGCGATAAAAAGAAGCGCAAGCCCAGGCCGCTC
ATCCGGCAGCAGCTCAACAAACTCAAGGAGGAAGCCAAGGCCGAGAAGGC
CAAGGCGGCAGAAGAAGCGGTGGCGGTAGGCGGCGGCGGGGTTAAAAGTA
AGAAGAGTAAGAAGAGGGCAGCTTCGGAGAACGAGGAGCCCAACAATGGC
GCGGCGGACGAGGGCGAGGGCGAGGATGATGACAGCGGGCGCGAGGCGGC
GAATGCGAAGAAGTCGAAGGGAAAGTCGAAGTCGCCCAAGGCGAAGGCTG
CAGTGAAGGCACGGGGGAAGAGGCGACGGACGGCTGCTGCATGA
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