mRNA_L-elsbetiae_contig6345.15003.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6345.15003.1
Unique NamemRNA_L-elsbetiae_contig6345.15003.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6345.15003.1 vs. uniprot
Match: D7G3N4_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 2.150e-78
Identity = 140/190 (73.68%), Postives = 150/190 (78.95%), Query Frame = 1 
Query:    1 CLTVAFSSLFSWGSAVGEVMALVVGFNALQALKCCCCPDSVPAEHKFCVNLLKAYGALSGILLVSDLASFGAILGQSCFVAWSGVSETSRELGLLLLVAAAAVHGLAVAACVEGVVIFRDGQVFLSSIGLKQVVSAYSLNADAEMMMTATSGPATAXXXXXXXXXXXXASAAGITSGRLYRGGGRALGTA 570
            CLTVA S +FSWGS VGEVMALVVGFNALQALKCCCCPDSVPAEH+FCVNLLKAYGALS ILLVSDL SFGAILGQSCFV WSGVS+TSR  GL LL+ AAAVHGLAVAAC+EG VIFRDGQ FLS+IGLKQVV+AYS  A+        SG  T              +AA ITSGRLYRGGGR+ GTA
Sbjct:  453 CLTVALSMVFSWGSTVGEVMALVVGFNALQALKCCCCPDSVPAEHRFCVNLLKAYGALSAILLVSDLLSFGAILGQSCFVTWSGVSDTSRHYGLALLLVAAAVHGLAVAACIEGGVIFRDGQTFLSTIGLKQVVTAYSFGAN--------SGGNT--------------TAAAITSGRLYRGGGRSTGTA 620
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6345.15003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3N4_ECTSI2.150e-7873.68Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6345contigL-elsbetiae_contig6345:7650..11125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue3.9e-66
Seed eggNOG ortholog2880.D7G3N4
KEGG koko:K09651
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsKOG2632@1,KOG2632@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons4
Model size684
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6345.15003.1prot_L-elsbetiae_contig6345.15003.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6345 7650..11125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.7157848-CDS-L-elsbetiae_contig6345:7649..79671622816700.7157848-CDS-L-elsbetiae_contig6345:7649..7967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 7650..7967 -
1691683750.2110813-CDS-L-elsbetiae_contig6345:7649..79671691683750.2110813-CDS-L-elsbetiae_contig6345:7649..7967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 7650..7967 -
1622816700.732816-CDS-L-elsbetiae_contig6345:9294..94321622816700.732816-CDS-L-elsbetiae_contig6345:9294..9432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 9295..9432 -
1691683750.2233827-CDS-L-elsbetiae_contig6345:9294..94321691683750.2233827-CDS-L-elsbetiae_contig6345:9294..9432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 9295..9432 -
1622816700.7473536-CDS-L-elsbetiae_contig6345:10440..105491622816700.7473536-CDS-L-elsbetiae_contig6345:10440..10549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 10441..10549 -
1691683750.2353609-CDS-L-elsbetiae_contig6345:10440..105491691683750.2353609-CDS-L-elsbetiae_contig6345:10440..10549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 10441..10549 -
1622816700.7581365-CDS-L-elsbetiae_contig6345:11006..111251622816700.7581365-CDS-L-elsbetiae_contig6345:11006..11125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 11007..11125 -
1691683750.2456949-CDS-L-elsbetiae_contig6345:11006..111251691683750.2456949-CDS-L-elsbetiae_contig6345:11006..11125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6345 11007..11125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6345.15003.1

>prot_L-elsbetiae_contig6345.15003.1 ID=prot_L-elsbetiae_contig6345.15003.1|Name=mRNA_L-elsbetiae_contig6345.15003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
CLTVAFSSLFSWGSAVGEVMALVVGFNALQALKCCCCPDSVPAEHKFCVN
LLKAYGALSGILLVSDLASFGAILGQSCFVAWSGVSETSRELGLLLLVAA
AAVHGLAVAACVEGVVIFRDGQVFLSSIGLKQVVSAYSLNADAEMMMTAT
SGPATAAGGGSAASTNSYASAAGITSGRLYRGGGRALGTAASNRAAASSR
GGGGARTAGRGAEAGALLLGRGGGGEGG
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mRNA from alignment at L-elsbetiae_contig6345:7650..11125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6345.15003.1 ID=mRNA_L-elsbetiae_contig6345.15003.1|Name=mRNA_L-elsbetiae_contig6345.15003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3476bp|location=Sequence derived from alignment at L-elsbetiae_contig6345:7650..11125- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGACGGTGGCGTTTTCCTCTCTGTTTTCCTGGGGGTCGGCGGTGGG
AGAGGTCATGGCGCTAGTTGTCGGCTTCAACGCCCTCCAGGCGCTCAAGT
GCTGCTGCTGCCCTGACAGGTGTCTGCAATGTAGTATGTACATACAAGAA
GTCTAAATCTACACACACACACACACACGTTGCGATTTATCGCAGAGCTT
ATTCCCCACTTTTTTTTGTTCCCTTTGCCGCCTTTGATTTGACTCATATT
GTTGCGCCGACTGACTCTCTCTGGCGCCGCACGCATGTGTTTTCTCTTCA
GCGGCGTCGAGTGCGCCCTGTGTTTGTGACCTCGGAGCCCCGTGGGTGGT
TTTTGGACTATTTTATTTTATTTTTTGTTTCCTCCCGTTATTGGCTTATT
CGTCGTCTGCCCCACTGGCCCTCATCCTCAACTACGACTAGCTAGACGAC
CCAACCGGGTTTACTCAGGAGGGGGGGGGGGGCTCCTGCGGTGCCTGGCT
GATTTGTTTTTATCTTTTAGTAGAGAGCTAAACTGTGAGAACAACAATAT
ATGCATGCCGTTTACTGCTGCCGCAGCGTCCCCGCAGAGCACAAGTTCTG
CGTGAACCTCCTCAAGGCCTACGGTGCTCTCAGCGGGATTCTGCTCGTCA
GCGACCTGGCCTCCTTCGGCGCTATTCTGGGCCAGGTGCGCGGGGGGGGG
GGGGGGGGGGGGTTCCGTGAGGGAGAAATATGTCACTCACAAAAACAACA
TAGAAAGAAGGGGTGGGGCAATGTACCATACCATCCGGCGGCACACTTTG
TTTTAGGTGGGAAAGGACGCCCCGGGACGCTCTCACAATGAATTGATTTG
TTTTGCTGCGTTCTGTAGATGGGCACACAGCAGTTAGTGCTTTGTTAAGG
CGGCCCTATTATTGCAGTCACGCTTATTGCTGTCGGCACACACTATAAAT
CGGTGAAGGGTTTTTGTTTTTTAAGTCCTGCGCAGCAGCCCCATGCGGGT
GTGTCGAGAGGTGTATACTACCTATGTATCTCATGTTTTCAGCCGGCACT
TCAGACTGCTGCTGTATTGCTTTACCTTCTTTTTTGTTGCCTGCCACCTC
GGATGCCTTTCGACGCTACACAAGATAACACCCCCCCCCCCTGGATCGAC
GATGTTCAGCGCTCGATTACTCCGTGACGAAGACGATGGTGCCAATACCA
AATGACACGTTTTCGGACAGCTAAATATCGCCGAGATTTTGTTTTTCCGA
CGCCACCCTTTTTCGGCACTGAAACTCTTCTTGTTGGGGAGGAGTCGAGC
TTTGAAAATCGGTCAAGGGGGTGTGTTATCTTGCGTGTCGTATACGATAC
AAGAGTGCTCCAAACCGTCGTGGTCCTGCAGCCCGACGTGGTCCTGCAGC
CCGAGTGTCGTGGCCTCCCTCCTCCTCGTGCATGATTGGCTGGCACAACG
GACAGGGTTGAATGTTTTGGCGTTTGTATTTTTTGCGGCTCGGATTTGGT
TCTCTCGTGTCCGCCGCCGTACTGAACGAGGGGTCCTCCACACGCGCGCT
CTGTCTGTCTGCCTGTCTTATCTGTCTGTCTGTGTACGCCGCCGCACTAA
ACAAGGAAGCCTCCACACGCACGCTCTGCCTGTCTGTGTGTCTGTCTGTG
TGTCTGTCTGTCTACGCTCCCCCCCCCTCCCCTTGCCCCGCAGTCGTGCT
TCGTCGCGTGGTCGGGGGTGTCTGAGACCTCGAGGGAGTTGGGCTTGCTC
CTGCTTGTCGCCGCTGCGGCGGTGCACGGCCTGGCGGTGGCGGCGTGCGT
GGAAGGGGTGGTCATCTTTCGCGACGGACAGGTGGGTGGAGAAAAAAAAA
AAAAAAAACGGTGGATCCTAAAGAGGCAAAAGGAGAGCGATTCCTTTCTG
CATATAATTATTTATAAAAAAAAGAAAACAACANNNNNNNNNNGGGGTGC
AGGGCGGGGAGGGGGAGGCGGGCGGGAAAGGGGAGAGAATTAGGCGGGAA
GAAAAGAGGAATAGAAAAAAAAAAAAAAAAAAACGGTGGATCCTAAAGAG
TCAAAATCTGATCGATTCCTTTCCATATATATGTATTTATGCGACAGAGC
GACCGACGGCTGCGTGAATCAGGAGTGCGGGAGAGGCTTTGTGTTTAGCT
GAGTATTCAATAAATACAGATGTACTTAGCATGTACTGATCTTGTCCTTT
TTAATTAATGCATACAATTGTCAGCAGCCTGCGTCCAGTCTGTGAAAAAG
TCGTTCCGGAGGGAACTGTTGTAAGCATACTGACTCCCCCTTTTTTCCCG
TCCCAAGACATTATCACTCGCACAAAATCCGTAATCCATCGAACACAATT
CGTTGGTGAAAAAACATTTCGAACAACTCGTTTTATGTATGTGCTCGCAC
GGGCAAGCAAACAACACACAAATGCATGTGATTTGTTGCGTTCTCAATCG
GTGCTGAACGCCGTGTAGTTTTGCTTGGGAGGTGTCCGTGGTGTATTTAT
ATAGCCAGCGACGGGTGACGGTCCCTCGGACTAAAGGCGGCCTAGCTGAC
TGCCCTGGGCAGTTTACTTTTATTTTTGCGGCAGTGGTGGTAAGTATTTA
GTGCTGTTTTGTTTTTATAATTAGGAGTCTACTGTAACCTGGCCTAGAAG
GGGAAGTGGTCTTTTTTGGATTGAGAGATCGGGACGGTTTTTAATTGATG
TGCAGACAAACAACAACAACAACCAACACCAACACCAACAACAACAACAA
CAACAACAACGGGACTGTCACGGGACTGTCAACAACCCCCCGCTACTGTT
GTAACCTGGCCTAGAAGGGGAAGTGGTATTTTTCGGATTGAGAGATGGGA
ACGGTTTTTAATTATTTTGAAAATAAAACAGTTAATCAAAAATGGAACCT
AACCCACAGAGAGACAGCCGACTCCCATGAGCTTCGAACGGTATTCCATA
TAGTGACGTAATATTGGTCCAGCCCAGTAGAAAAACACCTAAAAGACGAA
AAAGTCCATCACATAAACATAATTATTGTGCAGACAAATAACAACAACGG
GACTGTCACGGGACTGTCACGGGACTGTCACCGGACTGTCACCGGACTAC
CAACAACCCACCGCTGGCCCTTCCCCGGCCGCCTCCCGCGCGTCGTCCCC
GGCCGCAGGTTTTCTTGTCTTCCATCGGGCTCAAGCAAGTGGTGTCCGCC
TACTCCCTGAACGCCGACGCAGAGATGATGATGACCGCCACCAGCGGCCC
CGCCACCGCTGCCGGCGGCGGCAGCGCCGCCTCAACAAACTCCTACGCCT
CAGCGGCCGGGATAACGTCCGGGAGGCTCTACCGGGGAGGCGGGCGAGCG
CTGGGCACGGCCGCATCGAACCGGGCAGCCGCGTCGAGCAGGGGCGGGGG
GGGTGCGCGAACCGCGGGGAGAGGGGCCGAGGCGGGGGCGCTGTTGTTGG
GGAGGGGCGGAGGGGGGGAAGGGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6345:7650..11125-

>mRNA_L-elsbetiae_contig6345.15003.1 ID=mRNA_L-elsbetiae_contig6345.15003.1|Name=mRNA_L-elsbetiae_contig6345.15003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig6345:7650..11125- (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGACGGTGGCGTTTTCCTCTCTGTTTTCCTGGGGGTCGGCGGTGGG
AGAGGTCATGGCGCTAGTTGTCGGCTTCAACGCCCTCCAGGCGCTCAAGT
GCTGCTGCTGCCCTGACAGTGCCTGACGGTGGCGTTTTCCTCTCTGTTTT
CCTGGGGGTCGGCGGTGGGAGAGGTCATGGCGCTAGTTGTCGGCTTCAAC
GCCCTCCAGGCGCTCAAGTGCTGCTGCTGCCCTGACAGCGTCCCCGCAGA
GCACAAGTTCTGCGTGAACCTCCTCAAGGCCTACGGTGCTCTCAGCGGGA
TTCTGCTCGTCAGCGACCTGGCCTCCTTCGGCGCTATTCTGGGCCAGCGT
CCCCGCAGAGCACAAGTTCTGCGTGAACCTCCTCAAGGCCTACGGTGCTC
TCAGCGGGATTCTGCTCGTCAGCGACCTGGCCTCCTTCGGCGCTATTCTG
GGCCAGTCGTGCTTCGTCGCGTGGTCGGGGGTGTCTGAGACCTCGAGGGA
GTTGGGCTTGCTCCTGCTTGTCGCCGCTGCGGCGGTGCACGGCCTGGCGG
TGGCGGCGTGCGTGGAAGGGGTGGTCATCTTTCGCGACGGACAGTCGTGC
TTCGTCGCGTGGTCGGGGGTGTCTGAGACCTCGAGGGAGTTGGGCTTGCT
CCTGCTTGTCGCCGCTGCGGCGGTGCACGGCCTGGCGGTGGCGGCGTGCG
TGGAAGGGGTGGTCATCTTTCGCGACGGACAGGTTTTCTTGTCTTCCATC
GGGCTCAAGCAAGTGGTGTCCGCCTACTCCCTGAACGCCGACGCAGAGAT
GATGATGACCGCCACCAGCGGCCCCGCCACCGCTGCCGGCGGCGGCAGCG
CCGCCTCAACAAACTCCTACGCCTCAGCGGCCGGGATAACGTCCGGGAGG
CTCTACCGGGGAGGCGGGCGAGCGCTGGGCACGGCCGCATCGAACCGGGC
AGCCGCGTCGAGCAGGGGCGGGGGGGGTGCGCGAACCGCGGGGAGAGGGG
CCGAGGCGGGGGCGCTGTTGTTGGGGAGGGGCGGAGGGGGGGAAGGGGGT
GTTTTCTTGTCTTCCATCGGGCTCAAGCAAGTGGTGTCCGCCTACTCCCT
GAACGCCGACGCAGAGATGATGATGACCGCCACCAGCGGCCCCGCCACCG
CTGCCGGCGGCGGCAGCGCCGCCTCAACAAACTCCTACGCCTCAGCGGCC
GGGATAACGTCCGGGAGGCTCTACCGGGGAGGCGGGCGAGCGCTGGGCAC
GGCCGCATCGAACCGGGCAGCCGCGTCGAGCAGGGGCGGGGGGGGTGCGC
GAACCGCGGGGAGAGGGGCCGAGGCGGGGGCGCTGTTGTTGGGGAGGGGC
GGAGGGGGGGAAGGGGGT
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