mRNA_L-elsbetiae_contig6342.14999.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE) HSP 1 Score: 229 bits (584), Expect = 1.880e-69 Identity = 120/153 (78.43%), Postives = 133/153 (86.93%), Query Frame = 2 Query: 224 GSMMA--MMRKPVRSQAASDAVGAARRAGHGLCMSHRDLAASRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAVDAEGVPRREEEP 676 GSMMA M R P+R QA +D V A R GL M+ R+LAASRQC DIPTETLSL +DFVVINKPADVRMDG+FDV V+KLIR+WCPTLE+K+LKWVHQLDFATSGVLCVALHREAAARGCEAFRERRA+K+YLAVV+GAVD E VPRREEEP Sbjct: 29 GSMMASLMRRSPIRCQALADTVMAQR----GLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEP 177
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.090e-22 Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 2 Query: 341 SRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAVDAEGVPRREEEP 676 S+ P L L ++ V++KP VRM G F +T+EKL+ HW P ++ LKW+HQLDFATSGVLCV L+R AAA AF R +K YLAV++G V+ + P E +P Sbjct: 38 SQVFPPACESILYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKP 149
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH) HSP 1 Score: 100 bits (250), Expect = 9.900e-22 Identity = 57/112 (50.89%), Postives = 69/112 (61.61%), Query Frame = 2 Query: 356 DIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLI-----RHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAVDAEGVPRREEEP 676 D+ L+ ++ F VI+KPADVRMDG+FDVTVEKL+ + KD KWVHQLDFATSG LCVAL RE AA F R K YL+V+ G +D + RE EP Sbjct: 24 DVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEP 135
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN) HSP 1 Score: 99.4 bits (246), Expect = 1.680e-20 Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 2 Query: 374 LSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG--------AVDAEGVP 658 LS E FVV+NK D RMDG+FDVT+EK + P +E+ +W+HQLDFATSGVL V ++EA A GC FRE++ +K YLAVV+G +VD GVP Sbjct: 98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQVEK--FRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQGHLPFNPADSVDTAGVP 198
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP) HSP 1 Score: 97.1 bits (240), Expect = 6.720e-20 Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 2 Query: 329 DLAASRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG--------AVDAEGVP 658 D R + LS E FVV+NK D RMDG FDVT+EK + P + + +W+HQLDFATSGVL V +EA A GC FRE++ +K YLAVV G +VD GVP Sbjct: 83 DRGGPRTLDQLQLRVLSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVPK--FRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRGHLPFNPADSVDRSGVP 198
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A329SUS2_9STRA (PseudoU_synth_2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUS2_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.680e-19 Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 2 Query: 374 LSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG--------AVDAEGVP 658 LS E FVV+ K D RMDG+FDVT+EK + P +++ +W+HQLDFATSGVL V ++EA A GC FRE++ +K YLAVV G +VD++GVP Sbjct: 47 LSRDEHFVVLYKGPDERMDGAFDVTLEKALARDFPQVDK--FRWIHQLDFATSGVLAVGANKEATATGCRLFREKQVQKEYLAVVRGHLPFNPAESVDSDGVP 147
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A0P1AWK8_PLAHL (Rna pseudouridylate synthase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK8_PLAHL) HSP 1 Score: 95.1 bits (235), Expect = 3.360e-19 Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2 Query: 356 DIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEG 634 D+ LS +++FVV+NK D R+DG+FDVT+EK + P +++ +W+HQLDFATSGVL V +++EA A GC FRE++ +K YLAV+ G Sbjct: 36 DLQLHILSKNKNFVVLNKGPDERLDGAFDVTLEKALTRDFPHVDK--FRWIHQLDFATSGVLVVGVNKEATATGCRLFREKQVQKEYLAVIRG 126
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A225VLR7_9STRA (Pseudouridine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLR7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.100e-19 Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 329 DLAASRQCPDIPTETLSLSEDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVV 628 D + + LS E FVV+NK D RMDG+FDVT+EK + P +E+ +W+HQLDFATSGVL V +EA A GC FRE++ +K YLAVV Sbjct: 95 DRGGPKMLEQLKLRVLSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPEIEK--FRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVV 192
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A7S1TJJ5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TJJ5_9RHOD) HSP 1 Score: 87.4 bits (215), Expect = 1.410e-18 Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 2 Query: 329 DLAASRQCPDIPT--ETLSLSEDFVVINKPADVRMDGSFDVTVEKL----IRHWCPTLEEKDLKWVHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAV 625 + R+ P++P L SE ++V++KPADVRMDG F VTVEKL ++ E K +HQLD+ATSGVL + L REAA C+ F RR +KTYLA+ Sbjct: 11 NTVVGRRPPEVPPTLRVLFASERYLVVDKPADVRMDGDFPVTVEKLAEKELQARMGVQEVPRTKMIHQLDYATSGVLLLGLTREAARHACQLFEARRVKKTYLAI 115
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD) HSP 1 Score: 90.9 bits (224), Expect = 2.360e-18 Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 2 Query: 386 EDFVVINKPADVRMDGSFDVTVEKLIRHWCPTLEEKDLKW--------VHQLDFATSGVLCVALHREAAARGCEAFRERRARKTYLAVVEGAV 640 E +VV+NKPADVRMDG FDVTVEKL+R L +KD W VHQLD+ATSGVL +AL R +AA C+ F R +K YLA+V G + Sbjct: 40 EGYVVVNKPADVRMDGEFDVTVEKLVR---AHLTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTI 129 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6342.14999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6342.14999.1 >prot_L-elsbetiae_contig6342.14999.1 ID=prot_L-elsbetiae_contig6342.14999.1|Name=mRNA_L-elsbetiae_contig6342.14999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp MLAGGWVHQHVLGSSSSTASFISPTVGSMMAMMRKPVRSQAASDAVGAARback to top mRNA from alignment at L-elsbetiae_contig6342:345..2253- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6342.14999.1 ID=mRNA_L-elsbetiae_contig6342.14999.1|Name=mRNA_L-elsbetiae_contig6342.14999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1909bp|location=Sequence derived from alignment at L-elsbetiae_contig6342:345..2253- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6342:345..2253- >mRNA_L-elsbetiae_contig6342.14999.1 ID=mRNA_L-elsbetiae_contig6342.14999.1|Name=mRNA_L-elsbetiae_contig6342.14999.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig6342:345..2253- (Laminarionema elsbetiae ELsaHSoW15)back to top |