mRNA_L-elsbetiae_contig6336.14988.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6336.14988.1
Unique NamemRNA_L-elsbetiae_contig6336.14988.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6336.14988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6336contigL-elsbetiae_contig6336:9214..9673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.1255913-CDS-L-elsbetiae_contig6336:9213..95431622816699.1255913-CDS-L-elsbetiae_contig6336:9213..9543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6336 9214..9543 +
1691683749.1114542-CDS-L-elsbetiae_contig6336:9213..95431691683749.1114542-CDS-L-elsbetiae_contig6336:9213..9543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6336 9214..9543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816699.1377854-UTR-L-elsbetiae_contig6336:9543..96731622816699.1377854-UTR-L-elsbetiae_contig6336:9543..9673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6336 9544..9673 +
1691683749.1254776-UTR-L-elsbetiae_contig6336:9543..96731691683749.1254776-UTR-L-elsbetiae_contig6336:9543..9673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6336 9544..9673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6336.14988.1prot_L-elsbetiae_contig6336.14988.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6336 9214..9543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6336.14988.1

>prot_L-elsbetiae_contig6336.14988.1 ID=prot_L-elsbetiae_contig6336.14988.1|Name=mRNA_L-elsbetiae_contig6336.14988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
RHAQEGGVGRSSATCCGLNQLLANLPPPTAVPSCTTTGHYECVCFLSCLG
VVCRPGLVSCHVGGKFGGRGLQLFFSLTGENPARKTYLICSQLSSPALFR
FPVGVCALL*
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mRNA from alignment at L-elsbetiae_contig6336:9214..9673+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6336.14988.1 ID=mRNA_L-elsbetiae_contig6336.14988.1|Name=mRNA_L-elsbetiae_contig6336.14988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=460bp|location=Sequence derived from alignment at L-elsbetiae_contig6336:9214..9673+ (Laminarionema elsbetiae ELsaHSoW15)
CGACATGCGCAGGAGGGCGGGGTCGGACGCAGTAGCGCGACATGTTGCGG
ATTGAATCAATTATTGGCTAATCTCCCCCCCCCCACGGCTGTACCATCTT
GCACCACCACCGGACATTATGAGTGTGTTTGTTTCTTATCTTGTCTGGGG
GTCGTTTGTCGCCCGGGTCTTGTTTCCTGTCATGTGGGCGGTAAATTCGG
GGGGAGAGGACTACAGCTTTTTTTTAGCCTGACCGGCGAGAACCCGGCCC
GGAAAACATACCTCATCTGCTCGCAGCTGTCTTCACCTGCTTTGTTCAGA
TTTCCTGTTGGTGTTTGTGCACTCCTGTAGTACAGTTGCGGCCCGCACTT
AAGAACTTGACCGTTAAGGCTGGACACGATCAGTGGCCCGGTAGCGTCCC
CTGCTTTACTCTACAAGCTGGATTAAAATTTTATCTTGATTATAAAGACA
GCAAGTTGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6336:9214..9673+

>mRNA_L-elsbetiae_contig6336.14988.1 ID=mRNA_L-elsbetiae_contig6336.14988.1|Name=mRNA_L-elsbetiae_contig6336.14988.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig6336:9214..9673+ (Laminarionema elsbetiae ELsaHSoW15)
CGACATGCGCAGGAGGGCGGGGTCGGACGCAGTAGCGCGACATGTTGCGG
ATTGAATCAATTATTGGCTAATCTCCCCCCCCCCACGGCTGTACCATCTT
GCACCACCACCGGACATTATGAGTGTGTTTGTTTCTTATCTTGTCTGGGG
GTCGTTTGTCGCCCGGGTCTTGTTTCCTGTCATGTGGGCGGTAAATTCGG
GGGGAGAGGACTACAGCTTTTTTTTAGCCTGACCGGCGAGAACCCGGCCC
GGAAAACATACCTCATCTGCTCGCAGCTGTCTTCACCTGCTTTGTTCAGA
TTTCCTGTTGGTGTTTGTGCACTCCTGTAGCGACATGCGCAGGAGGGCGG
GGTCGGACGCAGTAGCGCGACATGTTGCGGATTGAATCAATTATTGGCTA
ATCTCCCCCCCCCCACGGCTGTACCATCTTGCACCACCACCGGACATTAT
GAGTGTGTTTGTTTCTTATCTTGTCTGGGGGTCGTTTGTCGCCCGGGTCT
TGTTTCCTGTCATGTGGGCGGTAAATTCGGGGGGAGAGGACTACAGCTTT
TTTTTAGCCTGACCGGCGAGAACCCGGCCCGGAAAACATACCTCATCTGC
TCGCAGCTGTCTTCACCTGCTTTGTTCAGATTTCCTGTTGGTGTTTGTGC
ACTCCTGTAG
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