mRNA_L-elsbetiae_contig6332.14983.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6332.14983.1
Unique NamemRNA_L-elsbetiae_contig6332.14983.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6332.14983.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.060e-19
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 2 
Query:   80 VLAWQPFGKAGWLRRREREHVKEHEGEVNITISDKGVLRASIDGRTVMKKGAPSWPFRGVFRRRDPSYELRVADDGFEITREGREVWRLNSK 355
            ++ + PFGK G+LRRR REH + H GE  ++I+ KG L  S+DG  V++K  PSW     FRR D SYELRV ++G +I+R G   W + ++
Sbjct:   36 LMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRKSGPSW---FGFRRTDRSYELRVTEEGVDISRRGMYDWGIKAQ 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6332.14983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9A5_ECTSI1.060e-1945.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6332contigL-elsbetiae_contig6332:5628..6722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009480.1
Exons2
Model size509
Cds size156
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6332.14983.1prot_L-elsbetiae_contig6332.14983.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6332 5761..5916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.9339914-UTR-L-elsbetiae_contig6332:5627..57601622816698.9339914-UTR-L-elsbetiae_contig6332:5627..5760Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6332 5628..5760 -
1691683748.9614668-UTR-L-elsbetiae_contig6332:5627..57601691683748.9614668-UTR-L-elsbetiae_contig6332:5627..5760Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6332 5628..5760 -
1622816698.9588654-UTR-L-elsbetiae_contig6332:5916..59431622816698.9588654-UTR-L-elsbetiae_contig6332:5916..5943Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6332 5917..5943 -
1691683748.9844944-UTR-L-elsbetiae_contig6332:5916..59431691683748.9844944-UTR-L-elsbetiae_contig6332:5916..5943Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6332 5917..5943 -
1622816698.9702475-UTR-L-elsbetiae_contig6332:6529..67221622816698.9702475-UTR-L-elsbetiae_contig6332:6529..6722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6332 6530..6722 -
1691683748.9984949-UTR-L-elsbetiae_contig6332:6529..67221691683748.9984949-UTR-L-elsbetiae_contig6332:6529..6722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6332 6530..6722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.945805-CDS-L-elsbetiae_contig6332:5760..59161622816698.945805-CDS-L-elsbetiae_contig6332:5760..5916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6332 5761..5916 -
1691683748.974466-CDS-L-elsbetiae_contig6332:5760..59161691683748.974466-CDS-L-elsbetiae_contig6332:5760..5916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6332 5761..5916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6332.14983.1

>prot_L-elsbetiae_contig6332.14983.1 ID=prot_L-elsbetiae_contig6332.14983.1|Name=mRNA_L-elsbetiae_contig6332.14983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MKKGAPSWPFRGVFRRRDPSYELRVADDGFEITREGREVWRLNSKHTARR
S*
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mRNA from alignment at L-elsbetiae_contig6332:5628..6722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6332.14983.1 ID=mRNA_L-elsbetiae_contig6332.14983.1|Name=mRNA_L-elsbetiae_contig6332.14983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1095bp|location=Sequence derived from alignment at L-elsbetiae_contig6332:5628..6722- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAACTGCTCAAGCTGCGTCGAATTCAGCGTGACATCGCTGAAGACC
ACGAGACGAAGGAGACCAAGAAAGAGAAGGTGCTGGCGTGGCAGCCGTTT
GGGAAGGCAGGGTGGCTGCGGCGGCGTGAGAGAGAGCACGTGAAAGAGCA
TGAGGGAGAAGTCAACATCACTATCTCCGACAAGGGGGTCTTGGTGAGTG
CGCAAATAACAACCTCTTCCCCTTCCCGCCCTCATTTCTTCCTCCGCCGT
CTGAAATGGTATCTTGCGCAAAAACGATATTTTAGGAAAAAAAATCAACG
AGGCGGTAGTAGAGCGTGACGATGCTTATAGGAGAGAGAACTCGTTCGCT
TTTTTCCCAAGCCAATGTTTTTAATGAATGTGTGTGTGTGTGTGTGTGTG
TGTGTATGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAG
ACGTGTACTACACCTTGCGGTGTACTTAGAGGTACTACACTTTGCAGCGC
ATTTGTCTGCACAAGTAGAACCAACGGGGGTCACACAGGAGGAGGAGGTG
AACACTGGGGTTTTTCTTCTTTTTTATTTTAATTTTTTGCCCCACCTTCC
TCCTGCGGTTGTTGCCTTGGGTTCTATCGCGAGAAGGGTTCAGCTGTTCC
TTTCCCTCGTCAACGTGATTACTACGTTGCAGTTTGGTACTCACGAGCTT
GTAGCATATTTATTGATCACTCAATCTAATTAGCACCCACCGCATTTCTA
CATCTATCTATCCTCGACACCACCTGCAGAGAGCTTCGATCGACGGCCGA
ACTGTCATGAAGAAGGGGGCACCGTCGTGGCCCTTCCGGGGGGTGTTTCG
ACGGAGGGACCCTTCCTACGAGTTAAGAGTCGCCGACGACGGATTCGAGA
TAACACGGGAAGGAAGAGAAGTTTGGCGCTTGAATTCGAAACACACCGCG
AGGCGCTCGTGATGCCATGCACTATCACTAGCTAGCCGTAGTGGAGGAAG
GGGTCCAGAGGGGCAGACGGCAAATAAGCCAACAATGAGAGAGAGAAAAA
AAAAAACTTATGACAGGAAACAAAAACAGTCTCTTGTGTTGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6332:5628..6722-

>mRNA_L-elsbetiae_contig6332.14983.1 ID=mRNA_L-elsbetiae_contig6332.14983.1|Name=mRNA_L-elsbetiae_contig6332.14983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig6332:5628..6722- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGGGGGCACCGTCGTGGCCCTTCCGGGGGGTGTTTCGACGGAG
GGACCCTTCCTACGAGTTAAGAGTCGCCGACGACGGATTCGAGATAACAC
GGGAAGGAAGAGAAGTTTGGCGCTTGAATTCGAAACACACCGCGAGGCGC
TCGTGAATGAAGAAGGGGGCACCGTCGTGGCCCTTCCGGGGGGTGTTTCG
ACGGAGGGACCCTTCCTACGAGTTAAGAGTCGCCGACGACGGATTCGAGA
TAACACGGGAAGGAAGAGAAGTTTGGCGCTTGAATTCGAAACACACCGCG
AGGCGCTCGTGA
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