mRNA_L-elsbetiae_contig6330.14981.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6330.14981.1
Unique NamemRNA_L-elsbetiae_contig6330.14981.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6330.14981.1 vs. uniprot
Match: D7G6G4_ECTSI (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G4_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.070e-31
Identity = 70/101 (69.31%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 VETRGFKLARLEASYEEVKVQCEEHAQRASALEVELSSLKESARTAALQHKATESKLRLQVGDAEDRVAEVLRRAESERRDAKDDASSLREQLETLRRGQQ 303
            VE+ GFKL RLE SY+E+K +C +HAQRAS +EVELS+LKES+R +ALQHK+TE+KLRLQ+G+AEDR AE LRR E ERR+AKD  SSL+EQL+ LRRG Q
Sbjct: 1085 VESLGFKLTRLETSYQELKAKCHQHAQRASEVEVELSTLKESSRASALQHKSTEAKLRLQLGEAEDRAAEALRRLEGERREAKDTTSSLKEQLDALRRGGQ 1185
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BLAST of mRNA_L-elsbetiae_contig6330.14981.1 vs. uniprot
Match: A0A6H5K2Z4_9PHAE (TMF_TATA_bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z4_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 6.040e-30
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 VETRGFKLARLEASYEEVKVQCEEHAQRASALEVELSSLKESARTAALQHKATESKLRLQVGDAEDRVAEVLRRAESERRDAKDDASSLREQLETLRRGQQ 303
            VE+ GFKL RLE S EE+K +C++HAQRAS +EVELS+LKES+R +AL+HK+TE+KLRLQ+G+AEDR AE LRR E ERR++KD  SSL+EQL+ LRRG Q
Sbjct: 1078 VESLGFKLTRLETSNEELKAKCDQHAQRASEVEVELSTLKESSRASALKHKSTEAKLRLQLGEAEDRAAEALRRLEGERRESKDITSSLKEQLDALRRGGQ 1178
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6330.14981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6G4_ECTSI1.070e-3169.31TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K2Z4_9PHAE6.040e-3067.33TMF_TATA_bd domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6330contigL-elsbetiae_contig6330:3401..7560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue7.6e-28
Seed eggNOG ortholog2880.D7G6G4
Preferred nameTMF1
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188,ko:K20286
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0001675,GO:0001817,GO:0001819,GO:0003006,GO:0003008,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0006952,GO:0006996,GO:0006997,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009889,GO:0009892,GO:0009894,GO:0009914,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010817,GO:0010927,GO:0010941,GO:0012505,GO:0014070,GO:0016020,GO:0016043,GO:0016050,GO:0016070,GO:0017016,GO:0017137,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030154,GO:0030162,GO:0030317,GO:0031090,GO:0031267,GO:0031323,GO:0031326,GO:0031329,GO:0031984,GO:0032268,GO:0032274,GO:0032275,GO:0032368,GO:0032370,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032940,GO:0032989,GO:0033327,GO:0033363,GO:0034641,GO:0034645,GO:0034654,GO:0040011,GO:0042176,GO:0042221,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0046483,GO:0046546,GO:0046661,GO:0046879,GO:0046883,GO:0046887,GO:0046903,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050886,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060548,GO:0060986,GO:0061136,GO:0061458,GO:0065007,GO:0065008,GO:0070887,GO:0070925,GO:0071310,GO:0071407,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097722,GO:0098542,GO:0098588,GO:0098791,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1903050,GO:1903362,GO:1903506,GO:1903530,GO:1903532,GO:1905952,GO:1905954,GO:2000112,GO:2000843,GO:2000845,GO:2001141
EggNOG free text desc.positive regulation of testosterone secretion
EggNOG OGsKOG4673@1,KOG4673@2759
EC3.2.1.21
COG Functional cat.S
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Ec32 ortholog descriptionTATA element modulatory factor 1 TATA binding
Ec32 orthologEc-05_006110.1
Exons3
Model size334
Cds size321
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6330.14981.1prot_L-elsbetiae_contig6330.14981.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6330 3412..7560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.6845932-UTR-L-elsbetiae_contig6330:3400..34111622816698.6845932-UTR-L-elsbetiae_contig6330:3400..3411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6330 3401..3411 -
1691683748.731589-UTR-L-elsbetiae_contig6330:3400..34111691683748.731589-UTR-L-elsbetiae_contig6330:3400..3411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6330 3401..3411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.6971285-CDS-L-elsbetiae_contig6330:3411..35521622816698.6971285-CDS-L-elsbetiae_contig6330:3411..3552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6330 3412..3552 -
1691683748.7452347-CDS-L-elsbetiae_contig6330:3411..35521691683748.7452347-CDS-L-elsbetiae_contig6330:3411..3552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6330 3412..3552 -
1622816698.712262-CDS-L-elsbetiae_contig6330:5560..56591622816698.712262-CDS-L-elsbetiae_contig6330:5560..5659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6330 5561..5659 -
1691683748.754238-CDS-L-elsbetiae_contig6330:5560..56591691683748.754238-CDS-L-elsbetiae_contig6330:5560..5659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6330 5561..5659 -
1622816698.7223284-CDS-L-elsbetiae_contig6330:7479..75601622816698.7223284-CDS-L-elsbetiae_contig6330:7479..7560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6330 7480..7560 -
1691683748.771241-CDS-L-elsbetiae_contig6330:7479..75601691683748.771241-CDS-L-elsbetiae_contig6330:7479..7560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6330 7480..7560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6330.14981.1

>prot_L-elsbetiae_contig6330.14981.1 ID=prot_L-elsbetiae_contig6330.14981.1|Name=mRNA_L-elsbetiae_contig6330.14981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
VETRGFKLARLEASYEEVKVQCEEHAQRASALEVELSSLKESARTAALQH
KATESKLRLQVGDAEDRVAEVLRRAESERRDAKDDASSLREQLETLRRGQ
QGGRGG*
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mRNA from alignment at L-elsbetiae_contig6330:3401..7560-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6330.14981.1 ID=mRNA_L-elsbetiae_contig6330.14981.1|Name=mRNA_L-elsbetiae_contig6330.14981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4160bp|location=Sequence derived from alignment at L-elsbetiae_contig6330:3401..7560- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGACCCGGGGTTTCAAGCTCGCTCGCCTGGAGGCGTCTTACGAGGA
GGTCAAGGTGCAATGCGAGGAACACGCTCAGGTGGGTGGGCCCCCATCCC
ATCACCCACCCGCGCACGCCGCCGCCGCTGCCGCCGCCGCCGCCGCTGCG
GCCTCTGTCGCAACCCCGGTTTTACCCGCCGCCGCCGCCGCCGCCGAGAA
ACGGTTTCGCCTCTCGTCTTTGTGGCGAAATATTTAGCGGGTCGATCGCG
AGGGCTGGCCCGAACGAAGGCTTGGGGTGGTTGGTTCCAGGCGTCTCTCG
CCCCCTCGAGAACGTGGGAGCGCGTGCATCGTCTGTGTATGTAGATGGAA
CTTGTACCGTATTACTAGAAGGGGGGGGGCTATGTATCACTGTTGTTGTA
CCTGTGCCCAGGAACGACACAGCACGCTGGTAGAACGAAAGAACAGATGT
ATACCACTGCGGTTGCTACGCAGCAGCAACCATTGCATTTGCTCGTACCC
TCGTCCAAGCGCTGGTACTTACGTTTTGGGTACCCCATCCGTAAGAAGGA
AAAATCACACACTTCTAAATCGGAACAATAAATGCCCCCTCATTGTTTAC
GCTAGCTACACCTTCAGACTGAAGCCAGCCAGTCAAGTGGATGTGCCGGG
AAGTTTTCTCCAGAACTGGACGAGTGCATATTCTTCCTACATACATACTC
CTATGGTATAATTAATAGATTGATGTTTTCGAAAAACGGTGGTGTTTGCT
GCTTTATGGCCGCGTGTTCTGGTGGCGCTGCGAAAACGCCGAGCCCGTTA
CAGCAGTGATTTCTTCGATGGCGGGTTTGCAACAGCGGAGGAACATCCAC
CGGAGAGCAAGCAACCCCCGCCTGGTTTTGCTAGGGTTAATTGAACTCCT
TTTCGGCGTTTTTTTTTTCTTCTCGAAATTGCGGAGGAACAAGATGTTGC
TACTACTTCTATTATACTGAGTTTTAATAGTATTTAGAGAAAAATAAGGT
GTGTTTAGATTTACCCACAAAAACGAAAAAAAAAAAGTGACAACGGGGCA
AGAACCTGCAGTTTTGAAAGATAAATCAGATGGTAATAATTGTTGGCCGG
CCTCGCAAATCTTAAATCTTTGCCAGGGGAGATGTTGAACTCTTCTGATA
TTTTAGGTTGTTTTTCTGCTCGCTTCGCCAAATATTTACGTCTCTGTATG
GGATACCGTTTTAACCCCATACGAGTATCGAGTCCTTGCTCTATAGTGTG
GGGTAGGTTCCATCTTTGATTCATTGTTTATTTAAAAAAAAAACGGGACC
TAACCCACATTGAGACGGGACTCTGTGGGATTCAACCGGTATTAATTAGG
AGTATTATTCCATACATGCACATAGTGACGTAATATTGGTCCGGCTGAGT
AGGGAAACACTAACACTTACAATGTCGGAAGAATTCAGCATGTCTCCCCT
GCAGAGCTCTCTGCCTGGTCAACCAACGTGTACATGCGTATACCGGAGAG
AAACCCGCCGGGATGTCGTGATACTGTCACTCCTTTTTTCGCCCCTGTAC
GCTGTTCACCCACGTTTTCCCCCCCTTCTTTTCTCCGTTGTGCTATGTAT
CGCCGCAACCATCGTCGGTAAGTGACCCCCCCCCCCGCCCCCCCCCCCTC
CATTGAAAGCTATTTCGTCTGAATACATAACCGAGACACCCCCGGGGACA
ACTAAACTTGCCAACGATCACGTCACACCTTTATGTACCGTGTTGCTGTC
ACTCTTTATTTTATCTATATACTTCGTATCCATCTTACACACACACACAC
CGTTCTTACCCCGCATTGCACCCGATTTTTTTTTTTTGCCGCGTGTGCTC
TTTGTCGTCCGTGCCCCTGCCCGTGCCCGTACCCGTGCGGGGAATATGTA
GCGGGCGTCGGCGTTGGAGGTTGAGCTGTCGAGCCTCAAGGAGTCGGCGC
GGACTGCGGCGCTGCAGCACAAGGCCACTGAGAGCAAGCTGAGGCTCCAG
GTTCGTGCATGCGTGCGTGCGAGCTTCCGAGGCCTTTTTGGGGATGCCTG
TCTTGGTGTAGATGTTATTATTGCATGATATTTACCATTCTACATACGAC
AGTAGATCGTCACTTATGATGTATGCGTGCGAGCTTCCGGTGCCCTTCTG
GGGATGCCTGTCTTGTGCTGGTGTGATACTCTGCAGTAGTGGCAGCAGGT
GGTTGTTAATTACGAGGATGGTTTCTTGGCGTTTTGAGTTCTCTACAACA
ACAGTAGAGCACCAGATGGTTGTCATGGGGCTGATTTCTTGACGTTTGAG
TTATCTACGAACAGCGGCAGCAGATGGTTGCTATGAGGCTGATTTGTTGA
CGTTCGAGCTCTCTCGATTTTTGACCGGTACGTGGAGGGTTAGGAGGTTC
CGGTCGTCCGTGTTTTGGTGGGCGGTGTTGTGGGCGGTGTCGTTGCCGGC
GTCCCCCCTGACGCTGCCGCTGTTGGATCGTCGGTCCGGGACTTCGGAGT
TGTGTTTTCTGTTCGCGTGGGGATGTTTAACGGCCCCAAGGCGGTTCCAT
TTTTTAATTAATTAATGTAGACTAAACGGCGAGGGAAAGGGGCGGCTGAA
CCCTTCTCGCCTTAAAAATATAGCAGTAGGCAAGCACCGCAGACGGGGGG
GAGTGGGGGCCTTGGGGGAAAGGAACCCTTCTGTGTGACCACGGGTCAGT
ACTCTGCCAAAAGATGTCCTCGTGACAGGGAGCCAGCCCATCGAGCACTG
GAAATAAATGCGAAGAAGAAAAAAAAATGTCTACATACAACTGTCAGCAG
TCTACATACATACATACGTCCCAGTCTGTGAAAAACAAAGTACGATATAT
ATATATATATTTTTTTTTTCTGCCCATTATTGGATTTTTGTCGTCTGTAT
ATATACTTCGTACATATAGTGTACATTTCAAACAAATGTCTTTATACAAA
TGTCAGCGGTCTACTTACGTACGTCCAGCCTGTGAGAAATGGAAAGAGGC
GTTCCAGGGGGACTGCTGTTGTAGGCACACTAACCCCCCCCTCACCACCC
CTAACAACAACAGACCAACCGGCCGGGACTGTCAGCGGGACTGTCAGCGG
GACATCCTTAAAACCCTCCCTCACCGCCCCTGACTATATATATACTGGCA
GAAAATCAGAAAGCCGCACATTTTATTTGATGCGATCTTCTCGGTTGTGC
GCAGGCAGCGCGCCGGCATTTCAGGGGCGTTTGGTGGATAATTACTACCA
CAATTGTTTGTGTGTGTGTGTGTGTGTGTTGTCTTCACATTAAAAACCGC
TCCGATCTCTCTATCCAGTACACCTCCATGAGTCCGTACTAATCCAATCC
AACGCTGACGCTGTCGATTCCCCCCGCGTGGTCACAGGGTAACTAACTTA
CCCTAAAATAGGGTACATGTACTGAAAAATGATCTTGCCTGTTGTTGCTG
GTATGTAATTATGTGACTAAATACTGTTAGTAGTACATCGGTGGTGGTGT
GCGTTGAGGTCGATGCGTTGCGTTTTCAGTGCTGTCGGGACCCCCGCCCG
TCTGTCTCAGCCGGCCGCAGAGAAGAGCGCTGAAGCATCCCCTCTCGTCC
GATGCCGTCTCCCCTCTGTAGCCATCAACCAGTCCAGTCTTTGTCAGATC
CACGACGACGCGGACGAGTCTTTTTTTTTTTTTTTCCCATATTGATGTAA
CAAGACGTTTTTTTTTTTTTTTTTTCACATTTATTTCCAATGCTCGACGG
TCGTCCACGGGGGCTTCTTGCCACGAGGGTATCTTGCCAGAGTAGTGACT
CGTGGTCAGACAGAAGGGCTCCTCCTCTTCCCGGGGCCCCCACTCCCTCG
CCCCCCCCTGCGCGGTGCTTGCCCCCCTTAAGATTTTTGTCGCGAGAAAG
GTTCAGCCGTCCCCTTCCCTCGTCGACGGTGAGATCGAAGATTATGCTGT
ATGTATGGACGTACATACATACCTGTGTACGTTTTTTTTATGTTGCTGTG
GAATGCAGGTTGGGGACGCGGAGGACAGGGTGGCAGAGGTGTTGCGCCGC
GCCGAGAGCGAGCGGAGGGACGCCAAGGACGACGCCTCCAGCCTCAGGGA
GCAGCTGGAAACCCTCAGGAGGGGGCAGCAGGGCGGCCGAGGGGGGTAAG
TCTTAGTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6330:3401..7560-

>mRNA_L-elsbetiae_contig6330.14981.1 ID=mRNA_L-elsbetiae_contig6330.14981.1|Name=mRNA_L-elsbetiae_contig6330.14981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig6330:3401..7560- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGACCCGGGGTTTCAAGCTCGCTCGCCTGGAGGCGTCTTACGAGGA
GGTCAAGGTGCAATGCGAGGAACACGCTCAGGTGGAGACCCGGGGTTTCA
AGCTCGCTCGCCTGGAGGCGTCTTACGAGGAGGTCAAGGTGCAATGCGAG
GAACACGCTCAGCGGGCGTCGGCGTTGGAGGTTGAGCTGTCGAGCCTCAA
GGAGTCGGCGCGGACTGCGGCGCTGCAGCACAAGGCCACTGAGAGCAAGC
TGAGGCTCCAGCGGGCGTCGGCGTTGGAGGTTGAGCTGTCGAGCCTCAAG
GAGTCGGCGCGGACTGCGGCGCTGCAGCACAAGGCCACTGAGAGCAAGCT
GAGGCTCCAGGTTGGGGACGCGGAGGACAGGGTGGCAGAGGTGTTGCGCC
GCGCCGAGAGCGAGCGGAGGGACGCCAAGGACGACGCCTCCAGCCTCAGG
GAGCAGCTGGAAACCCTCAGGAGGGGGCAGCAGGGCGGCCGAGGGGGGTA
AGTTGGGGACGCGGAGGACAGGGTGGCAGAGGTGTTGCGCCGCGCCGAGA
GCGAGCGGAGGGACGCCAAGGACGACGCCTCCAGCCTCAGGGAGCAGCTG
GAAACCCTCAGGAGGGGGCAGCAGGGCGGCCGAGGGGGGTAA
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