mRNA_L-elsbetiae_contig6324.14972.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6324.14972.1
Unique NamemRNA_L-elsbetiae_contig6324.14972.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: D8LH04_ECTSI (Recombinase A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH04_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.690e-57
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLEKAQKDREGGVNDTPVTDLE 309
            VAKNKIAPPFR+VEMDILFGTGIDTVSCLLDAAEDAG FTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQ QVRAHLLEKA KDREGGV DTP+TDLE
Sbjct:  316 VAKNKIAPPFRVVEMDILFGTGIDTVSCLLDAAEDAGFFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQDQVRAHLLEKAIKDREGGVADTPITDLE 418
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BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: A0A4P5VGT3_9CYAN (Protein RecA n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VGT3_9CYAN)

HSP 1 Score: 113 bits (282), Expect = 4.260e-27
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLE 252
            VAKNK+APPFRI E DILFG GI TV CLLD AE+ G+ TRKG+WYSYEG N+ QGR NT+A L++N   ++T++ Q R  L E
Sbjct:  266 VAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIAWLEQNPGPKDTIEVQTRRRLTE 349
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BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: A0A7T1HW89_9SYNE (Protein RecA n=1 Tax=Synechococcus sp. CBW1004 TaxID=1353136 RepID=A0A7T1HW89_9SYNE)

HSP 1 Score: 109 bits (273), Expect = 8.940e-26
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLE 252
            VAKNK+APPFRI E DILFG GI T+ CLLD AE+ G+ TRKG+WYSYEG N+ QGR NT+  L++N + +ET++   R  L+E
Sbjct:  273 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIGWLEQNPSEKETIEQLTRRKLME 356
[Close]
BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: A0A1Q8ZHP9_9CYAN (Protein RecA n=1 Tax=Leptolyngbya sp. 'hensonii' TaxID=1922337 RepID=A0A1Q8ZHP9_9CYAN)

HSP 1 Score: 108 bits (270), Expect = 1.650e-25
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHL 246
            VAKNK+APPFRI E DI+FG GI T+ CL+D AE+ G+ TRKG+WYSY G N+SQGR N + +L+EN    +TL+ QVR  L
Sbjct:  260 VAKNKVAPPFRIAEFDIIFGKGISTLGCLVDMAEETGVLTRKGAWYSYSGDNISQGRDNAIKYLEENPEFAKTLEQQVRQKL 341
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BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: UPI0014073AC0 (recombinase RecA n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI0014073AC0)

HSP 1 Score: 108 bits (269), Expect = 1.810e-25
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAH 243
            VAKNK+APPFRI E DILFG GI T+ CL+D AE+A I  RKG+WYSY G+N+ QGR N +AHL+EN  L   ++ QV+AH
Sbjct:  249 VAKNKVAPPFRIAEFDILFGQGISTLGCLVDMAEEANIVVRKGAWYSYGGENIGQGRDNAMAHLQENPDLLAEIEQQVKAH 329
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BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: A3Z2F8_9SYNE (Protein RecA n=1 Tax=Synechococcus sp. WH 5701 TaxID=69042 RepID=A3Z2F8_9SYNE)

HSP 1 Score: 105 bits (263), Expect = 2.180e-25
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLE 252
            VAKNK+APPFRI E DILFG GI T+ CLLD AE+ G+  RKG+WYSYEG N+ QGR NT+  +++N     T++T VR  L E
Sbjct:  132 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTIVWMEQNPEAATTIETLVRQKLSE 215
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BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: K9P8Q1_CYAGP (Protein RecA n=7 Tax=Cyanobacteria TaxID=1117 RepID=K9P8Q1_CYAGP)

HSP 1 Score: 108 bits (270), Expect = 2.520e-25
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLE 252
            VAKNK+APPFRI E DILFG GI T+ CLLD AE+ G+ +RKG+WYSYEG N+ QGR NT+A L++N   +E ++T  R  L E
Sbjct:  278 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVSRKGAWYSYEGDNIGQGRDNTIAWLEQNPGPKEVIETLTRQKLTE 361
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BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: A0A4P7ZVP2_9SYNE (Protein RecA n=9 Tax=Synechococcaceae TaxID=1890426 RepID=A0A4P7ZVP2_9SYNE)

HSP 1 Score: 107 bits (268), Expect = 3.510e-25
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLE 252
            VAKNK+APPFRI E DILFG GI TV CLLD AE+ G+  RKG+WYSYEG N+ QGR NT+  L++N   +E ++ QVR  L E
Sbjct:  260 VAKNKVAPPFRIAEFDILFGRGISTVGCLLDLAEENGVVVRKGAWYSYEGDNIGQGRDNTITWLEQNPEPKEQIERQVREKLSE 343
[Close]
BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: A0A5J6Q4U6_9SYNE (Protein RecA n=1 Tax=Synechococcus sp. RSCCF101 TaxID=2511069 RepID=A0A5J6Q4U6_9SYNE)

HSP 1 Score: 107 bits (268), Expect = 4.770e-25
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLEKA 258
            VAKNK+APPFRI E DILFG GI T+ CLLD AE+ G+  RKG+WYSY G N+ QGR NT+  L++N    +T++T+VR  L E A
Sbjct:  265 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYNGDNIGQGRDNTIGWLEQNSEPAQTIETEVRRRLTEGA 350
[Close]
BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Match: RECA_SYNSC (Protein RecA n=14 Tax=Terrabacteria group TaxID=1783272 RepID=RECA_SYNSC)

HSP 1 Score: 107 bits (267), Expect = 4.840e-25
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:    1 VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEGKNVSQGRLNTVAHLKENQALRETLQTQVRAHLLE 252
            VAKNK+APPFRI E DILFG GI T+ CLLD AE+ G+  RKG+WYSYEG N+ QGR NT++ ++EN     T++T VR  L E
Sbjct:  257 VAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTISWMEENPDATATIETLVRQKLTE 340
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6324.14972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH04_ECTSI1.690e-5794.17Recombinase A n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A4P5VGT3_9CYAN4.260e-2761.90Protein RecA n=1 Tax=Cyanobium sp. TaxID=2164130 R... [more]
A0A7T1HW89_9SYNE8.940e-2659.52Protein RecA n=1 Tax=Synechococcus sp. CBW1004 Tax... [more]
A0A1Q8ZHP9_9CYAN1.650e-2559.76Protein RecA n=1 Tax=Leptolyngbya sp. 'hensonii' T... [more]
UPI0014073AC01.810e-2561.73recombinase RecA n=1 Tax=Aphanocapsa montana TaxID... [more]
A3Z2F8_9SYNE2.180e-2558.33Protein RecA n=1 Tax=Synechococcus sp. WH 5701 Tax... [more]
K9P8Q1_CYAGP2.520e-2559.52Protein RecA n=7 Tax=Cyanobacteria TaxID=1117 RepI... [more]
A0A4P7ZVP2_9SYNE3.510e-2560.71Protein RecA n=9 Tax=Synechococcaceae TaxID=189042... [more]
A0A5J6Q4U6_9SYNE4.770e-2558.14Protein RecA n=1 Tax=Synechococcus sp. RSCCF101 Ta... [more]
RECA_SYNSC4.840e-2559.52Protein RecA n=14 Tax=Terrabacteria group TaxID=17... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6324contigL-elsbetiae_contig6324:9427..10919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue6.6e-48
Seed eggNOG ortholog2880.D8LH04
KEGG koko:K03553
KEGG Pathwayko03440,map03440
KEGG ModuleM00729
Hectar predicted targeting categoryother localisation
EggNOG free text desc.recombinase activity
EggNOG OGsCOG0468@1,KOG1433@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Ec32 ortholog descriptionDNA recombination and repair protein RecA
Ec32 orthologEc-14_001240.1
Exons3
Model size420
Cds size420
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6324.14972.1prot_L-elsbetiae_contig6324.14972.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6324 9427..10919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.7898216-CDS-L-elsbetiae_contig6324:9426..96151622816697.7898216-CDS-L-elsbetiae_contig6324:9426..9615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 9427..9615 -
1691683748.0784938-CDS-L-elsbetiae_contig6324:9426..96151691683748.0784938-CDS-L-elsbetiae_contig6324:9426..9615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 9427..9615 -
1622816697.8016906-CDS-L-elsbetiae_contig6324:10034..101001622816697.8016906-CDS-L-elsbetiae_contig6324:10034..10100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 10035..10100 -
1691683748.0914469-CDS-L-elsbetiae_contig6324:10034..101001691683748.0914469-CDS-L-elsbetiae_contig6324:10034..10100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 10035..10100 -
1622816697.8144083-CDS-L-elsbetiae_contig6324:10754..109191622816697.8144083-CDS-L-elsbetiae_contig6324:10754..10919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 10755..10919 -
1691683748.102898-CDS-L-elsbetiae_contig6324:10754..109191691683748.102898-CDS-L-elsbetiae_contig6324:10754..10919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 10755..10919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6324.14972.1

>prot_L-elsbetiae_contig6324.14972.1 ID=prot_L-elsbetiae_contig6324.14972.1|Name=mRNA_L-elsbetiae_contig6324.14972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
VAKNKIAPPFRIVEMDILFGTGIDTVSCLLDAAEDAGIFTRKGSWYSYEG
KNVSQGRLNTVAHLKENQALRETLQTQVRAHLLEKAQKDREGGVNDTPVT
DLEAAAAGGGGGGAGEVLGGMPPARRPSASVEEGAAATV*
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mRNA from alignment at L-elsbetiae_contig6324:9427..10919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6324.14972.1 ID=mRNA_L-elsbetiae_contig6324.14972.1|Name=mRNA_L-elsbetiae_contig6324.14972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1493bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:9427..10919- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGAAGAACAAGATCGCCCCGCCCTTCCGTATCGTGGAGATGGACAT
CCTGTTCGGAACGGGCATCGACACGGTCAGCTGCCTGCTGGACGCCGCGG
AGGACGCCGGCATCTTCACCCGCAAGGGCTCGTGGTACAGCTACGAGGGC
AAGAACGTCTCACAGGTGCGTCGGAGTTACGGCAGGCAGTCTTTCCTCAC
CCCCCCCCACCCCCCACCCATCCACCCCCCGTTTGCGGTTGGCTTGGGAC
TCGCAAGTCCCGGCGAGATCTTTAGCTGGGGGCCGTGTGCGGTTGGCTTT
CTCTCTCCCAAAATGTAGCTTGGACGAAATGCTCCGTGGACTCGCTTGCT
GCTGGTCGCTCCTCCGCGGCTGCTGTTTTGCTTTTGGGGGGGGGGGCGCC
GCTTCCGCTCTCTTTGGCCCTCCCTCCCCTTTATTCAGCTTAATACTTAA
AGGACTTAGACTTCATTGTTGACGAGGGTGGGGAGTGCTGAGCCCTGCTC
GCGACAAAAACATCTGAGGCAAAAACCGCAGGAGGGGGCCCACCCCCCCC
CCCCCCTCCTGTGTGACCCCGGTTGGGTCGTCTAGATAGTCATAGTGGAG
GAAGGGGGCCAGTGGGGCAGACGACAAATATGCCAATAATGGGAGGAAAA
AAAAAACATACATACATACATACATACCTCTACAACATATGTACACATTG
TATACTAGCTGTGTGTCCCCTCTCTCATTTTTTTTATGTTTGTGCCCTCT
TGCTCCTACTATTTACTTGCCGACACGCGCGCTGACTCTGCTGTTTCTTC
CCCTTTTTTGGTTGACCAGGGTCGCTTGAATACCGTGGCGCACCTGAAGG
AGAATCAAGCCCTGAGGGAGACATTGCAAACACAGGTACGGCAGGCCCGG
AACTCTGCAAAGTGTTCTGTGATATTTTTACCACCGTACACTGCTGTACC
AGCAGCCGCGGTACCAGCAGTAGAAGGGAGTGACACTCCCCCCCTAGTAC
TGGCTGTTTACGCATCTGCTGCGGGGGGGGGACTGGGTTTTTCTGCTGCG
AAACGACGAGATGGTATGTGAGATTTTATATCGACGCGAAACCCCTTTTG
CCTACCTCAATCTCTTGTCTGGTTTTAGTGTTTCCTTTGTTCTCTTGAGC
GCAATCCGAGCAGCAAAAAACTCACCCGCCCCGTCTGGCCTCTTTGTCTT
GCCCCCCCCCCCGCAACCGCCGCCTCTCGGGGGCGCTCGATCGCTCGATC
TCAAACACGCTCTCGCGCGCTACGTACACGCATAACCCATGGACATTCGT
GTAGGTGCGCGCCCACCTCCTAGAGAAGGCGCAGAAGGACCGCGAGGGCG
GGGTCAACGACACGCCCGTCACGGACCTGGAGGCGGCGGCGGCGGGCGGC
GGCGGCGGCGGCGCGGGCGAGGTGCTGGGAGGCATGCCGCCGGCGCGGCG
ACCGTCGGCGTCCGTGGAGGAGGGGGCCGCCGCGACCGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6324:9427..10919-

>mRNA_L-elsbetiae_contig6324.14972.1 ID=mRNA_L-elsbetiae_contig6324.14972.1|Name=mRNA_L-elsbetiae_contig6324.14972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:9427..10919- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGAAGAACAAGATCGCCCCGCCCTTCCGTATCGTGGAGATGGACAT
CCTGTTCGGAACGGGCATCGACACGGTCAGCTGCCTGCTGGACGCCGCGG
AGGACGCCGGCATCTTCACCCGCAAGGGCTCGTGGTACAGCTACGAGGGC
AAGAACGTCTCACAGGTCGCGAAGAACAAGATCGCCCCGCCCTTCCGTAT
CGTGGAGATGGACATCCTGTTCGGAACGGGCATCGACACGGTCAGCTGCC
TGCTGGACGCCGCGGAGGACGCCGGCATCTTCACCCGCAAGGGCTCGTGG
TACAGCTACGAGGGCAAGAACGTCTCACAGGGTCGCTTGAATACCGTGGC
GCACCTGAAGGAGAATCAAGCCCTGAGGGAGACATTGCAAACACAGGGTC
GCTTGAATACCGTGGCGCACCTGAAGGAGAATCAAGCCCTGAGGGAGACA
TTGCAAACACAGGTGCGCGCCCACCTCCTAGAGAAGGCGCAGAAGGACCG
CGAGGGCGGGGTCAACGACACGCCCGTCACGGACCTGGAGGCGGCGGCGG
CGGGCGGCGGCGGCGGCGGCGCGGGCGAGGTGCTGGGAGGCATGCCGCCG
GCGCGGCGACCGTCGGCGTCCGTGGAGGAGGGGGCCGCCGCGACCGTGTA
GGTGCGCGCCCACCTCCTAGAGAAGGCGCAGAAGGACCGCGAGGGCGGGG
TCAACGACACGCCCGTCACGGACCTGGAGGCGGCGGCGGCGGGCGGCGGC
GGCGGCGGCGCGGGCGAGGTGCTGGGAGGCATGCCGCCGGCGCGGCGACC
GTCGGCGTCCGTGGAGGAGGGGGCCGCCGCGACCGTGTAG
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