mRNA_L-elsbetiae_contig6324.14970.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6324.14970.1
Unique NamemRNA_L-elsbetiae_contig6324.14970.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6324.14970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6324contigL-elsbetiae_contig6324:599..1477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size879
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6324.14970.1prot_L-elsbetiae_contig6324.14970.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6324 604..1368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.562689-UTR-L-elsbetiae_contig6324:598..6031622816697.562689-UTR-L-elsbetiae_contig6324:598..603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6324 599..603 +
1691683747.8995504-UTR-L-elsbetiae_contig6324:598..6031691683747.8995504-UTR-L-elsbetiae_contig6324:598..603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6324 599..603 +
1622816697.5843947-UTR-L-elsbetiae_contig6324:1368..14771622816697.5843947-UTR-L-elsbetiae_contig6324:1368..1477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6324 1369..1477 +
1691683747.9253335-UTR-L-elsbetiae_contig6324:1368..14771691683747.9253335-UTR-L-elsbetiae_contig6324:1368..1477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6324 1369..1477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.5736432-CDS-L-elsbetiae_contig6324:603..13681622816697.5736432-CDS-L-elsbetiae_contig6324:603..1368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 604..1368 +
1691683747.9130387-CDS-L-elsbetiae_contig6324:603..13681691683747.9130387-CDS-L-elsbetiae_contig6324:603..1368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6324 604..1368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6324.14970.1

>prot_L-elsbetiae_contig6324.14970.1 ID=prot_L-elsbetiae_contig6324.14970.1|Name=mRNA_L-elsbetiae_contig6324.14970.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MYLQPLAVLSCCRGRWDFRVCLFPEELRSREPTRSSSRRKKKKRKRECLV
GGGGFVRGGIEEATHAPACLTSETTAFRRRPNAPTLPARNYTRPPKNIHV
APKGPAEYPSNVLTREEGGRGPADGGVLAPACGKESNPFFEKSTRSRPHA
HGSQALTFFHRQASTRRLSSGRETIDVFAASGRDCTRLPACVPTRSATRV
QRTACWFSLFCSPANISAPERVCSLVRGYGAGVLLSSAIIVCVEAAHQAQ
SAIF*
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mRNA from alignment at L-elsbetiae_contig6324:599..1477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6324.14970.1 ID=mRNA_L-elsbetiae_contig6324.14970.1|Name=mRNA_L-elsbetiae_contig6324.14970.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=879bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:599..1477+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCATGTATCTGCAGCCTTTGGCTGTTCTCTCGTGTTGTCGTGGTCGT
TGGGACTTCCGAGTGTGTCTCTTTCCCGAGGAACTGCGGTCTCGAGAGCC
GACCAGGTCGTCCAGCCGGAGGAAGAAGAAGAAGAGAAAAAGGGAGTGTT
TGGTGGGCGGGGGGGGCTTTGTCAGAGGCGGGATAGAAGAGGCGACCCAC
GCCCCTGCTTGCTTAACGAGTGAGACCACGGCCTTTCGGCGGCGGCCCAA
TGCGCCCACATTACCCGCCCGTAACTACACGCGACCCCCCAAAAACATCC
ACGTAGCCCCCAAGGGTCCCGCCGAGTATCCAAGTAATGTCTTAACCAGG
GAGGAAGGAGGGCGTGGCCCGGCGGATGGAGGGGTGCTCGCGCCCGCGTG
TGGGAAAGAGTCGAACCCGTTCTTTGAAAAAAGCACAAGGAGCCGGCCAC
ATGCCCATGGTTCGCAAGCGCTTACGTTCTTTCACCGGCAAGCATCCACC
CGAAGACTTTCGTCCGGCCGTGAGACCATTGATGTGTTTGCAGCCTCGGG
GAGAGACTGCACCCGCCTGCCCGCCTGCGTACCCACAAGGAGCGCCACCA
GAGTCCAGCGCACCGCGTGCTGGTTCTCTCTGTTTTGCTCTCCAGCTAAT
ATCTCAGCGCCCGAGCGCGTTTGCTCTTTGGTTCGTGGCTACGGCGCGGG
AGTGCTGCTTTCTTCTGCTATCATCGTGTGCGTGGAAGCCGCGCACCAAG
CGCAAAGCGCTATTTTCTGAGAGCCAAGAATGTTCGTGTGTGTACGTACC
GTAGGTGACACAAGATACCACACCCCCCGGACCGACTTTTAGAGCTCCAT
TACTCCGTAACGAAGAGGGTGCCAGCGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6324:599..1477+

>mRNA_L-elsbetiae_contig6324.14970.1 ID=mRNA_L-elsbetiae_contig6324.14970.1|Name=mRNA_L-elsbetiae_contig6324.14970.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig6324:599..1477+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATCTGCAGCCTTTGGCTGTTCTCTCGTGTTGTCGTGGTCGTTGGGA
CTTCCGAGTGTGTCTCTTTCCCGAGGAACTGCGGTCTCGAGAGCCGACCA
GGTCGTCCAGCCGGAGGAAGAAGAAGAAGAGAAAAAGGGAGTGTTTGGTG
GGCGGGGGGGGCTTTGTCAGAGGCGGGATAGAAGAGGCGACCCACGCCCC
TGCTTGCTTAACGAGTGAGACCACGGCCTTTCGGCGGCGGCCCAATGCGC
CCACATTACCCGCCCGTAACTACACGCGACCCCCCAAAAACATCCACGTA
GCCCCCAAGGGTCCCGCCGAGTATCCAAGTAATGTCTTAACCAGGGAGGA
AGGAGGGCGTGGCCCGGCGGATGGAGGGGTGCTCGCGCCCGCGTGTGGGA
AAGAGTCGAACCCGTTCTTTGAAAAAAGCACAAGGAGCCGGCCACATGCC
CATGGTTCGCAAGCGCTTACGTTCTTTCACCGGCAAGCATCCACCCGAAG
ACTTTCGTCCGGCCGTGAGACCATTGATGTGTTTGCAGCCTCGGGGAGAG
ACTGCACCCGCCTGCCCGCCTGCGTACCCACAAGGAGCGCCACCAGAGTC
CAGCGCACCGCGTGCTGGTTCTCTCTGTTTTGCTCTCCAGCTAATATCTC
AGCGCCCGAGCGCGTTTGCTCTTTGGTTCGTGGCTACGGCGCGGGAGTGC
TGCTTTCTTCTGCTATCATCGTGTGCGTGGAAGCCGCGCACCAAGCGCAA
AGCGCTATTTTCTGAATGTATCTGCAGCCTTTGGCTGTTCTCTCGTGTTG
TCGTGGTCGTTGGGACTTCCGAGTGTGTCTCTTTCCCGAGGAACTGCGGT
CTCGAGAGCCGACCAGGTCGTCCAGCCGGAGGAAGAAGAAGAAGAGAAAA
AGGGAGTGTTTGGTGGGCGGGGGGGGCTTTGTCAGAGGCGGGATAGAAGA
GGCGACCCACGCCCCTGCTTGCTTAACGAGTGAGACCACGGCCTTTCGGC
GGCGGCCCAATGCGCCCACATTACCCGCCCGTAACTACACGCGACCCCCC
AAAAACATCCACGTAGCCCCCAAGGGTCCCGCCGAGTATCCAAGTAATGT
CTTAACCAGGGAGGAAGGAGGGCGTGGCCCGGCGGATGGAGGGGTGCTCG
CGCCCGCGTGTGGGAAAGAGTCGAACCCGTTCTTTGAAAAAAGCACAAGG
AGCCGGCCACATGCCCATGGTTCGCAAGCGCTTACGTTCTTTCACCGGCA
AGCATCCACCCGAAGACTTTCGTCCGGCCGTGAGACCATTGATGTGTTTG
CAGCCTCGGGGAGAGACTGCACCCGCCTGCCCGCCTGCGTACCCACAAGG
AGCGCCACCAGAGTCCAGCGCACCGCGTGCTGGTTCTCTCTGTTTTGCTC
TCCAGCTAATATCTCAGCGCCCGAGCGCGTTTGCTCTTTGGTTCGTGGCT
ACGGCGCGGGAGTGCTGCTTTCTTCTGCTATCATCGTGTGCGTGGAAGCC
GCGCACCAAGCGCAAAGCGCTATTTTCTGA
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