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Homology
BLAST of mRNA_L-elsbetiae_contig6321.14966.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 2.210e-5 Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 3
Query: 180 TECSHRGCTKRPYFGVEGSKHVEFCSGHKKNGMVNVVNKR 299
++C H CTKRP +GV GSK EFCS H ++GMVNV NKR
Sbjct: 2 SQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
BLAST of mRNA_L-elsbetiae_contig6321.14966.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 2.360e-5 Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 3
Query: 180 TECSHRGCTKRPYFGVEGSKHVEFCSGHKKNGMVNVVNKR 299
++C H CTKRP +GV GSK EFCS H ++GMVNV NKR
Sbjct: 62 SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
BLAST of mRNA_L-elsbetiae_contig6321.14966.1 vs. uniprot
Match: D7FLV4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV4_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 9.550e-5 Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 3
Query: 138 RSWRRQQRLGKMPSTECSHRGCTKRPYFGVEGSKHVEFCSGHKKNGMVNVVNK 296
RS R +Q + + T C H C KRP FG GSK VEFCS H+K GMV++VNK
Sbjct: 128 RSNRAKQGVAHISQT-CGHPACMKRPSFGKAGSKEVEFCSRHQKQGMVDLVNK 179
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 2323 |
Cds size | 1530 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816697.2595406-UTR-L-elsbetiae_contig6321:909..1079 | 1622816697.2595406-UTR-L-elsbetiae_contig6321:909..1079 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6321 910..1079 + |
1691683747.6688607-UTR-L-elsbetiae_contig6321:909..1079 | 1691683747.6688607-UTR-L-elsbetiae_contig6321:909..1079 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6321 910..1079 + |
1622816697.3114707-UTR-L-elsbetiae_contig6321:4014..4637 | 1622816697.3114707-UTR-L-elsbetiae_contig6321:4014..4637 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6321 4015..4637 + |
1691683747.713483-UTR-L-elsbetiae_contig6321:4014..4637 | 1691683747.713483-UTR-L-elsbetiae_contig6321:4014..4637 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6321 4015..4637 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816697.2727878-CDS-L-elsbetiae_contig6321:1079..2490 | 1622816697.2727878-CDS-L-elsbetiae_contig6321:1079..2490 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6321 1080..2490 + |
1691683747.6816187-CDS-L-elsbetiae_contig6321:1079..2490 | 1691683747.6816187-CDS-L-elsbetiae_contig6321:1079..2490 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6321 1080..2490 + |
1622816697.2842395-CDS-L-elsbetiae_contig6321:3366..3464 | 1622816697.2842395-CDS-L-elsbetiae_contig6321:3366..3464 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6321 3367..3464 + |
1691683747.6913657-CDS-L-elsbetiae_contig6321:3366..3464 | 1691683747.6913657-CDS-L-elsbetiae_contig6321:3366..3464 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6321 3367..3464 + |
1622816697.2966537-CDS-L-elsbetiae_contig6321:3993..4014 | 1622816697.2966537-CDS-L-elsbetiae_contig6321:3993..4014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6321 3994..4014 + |
1691683747.7024903-CDS-L-elsbetiae_contig6321:3993..4014 | 1691683747.7024903-CDS-L-elsbetiae_contig6321:3993..4014 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6321 3994..4014 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6321.14966.1 >prot_L-elsbetiae_contig6321.14966.1 ID=prot_L-elsbetiae_contig6321.14966.1|Name=mRNA_L-elsbetiae_contig6321.14966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=510bp
MPSTECSHRGCTKRPYFGVEGSKHVEFCSGHKKNGMVNVVNKRCAHHGCT KQPYFGVEGSKLTVSCSAHKKDGMVDVVNKRCAHHGCTKRPYFGVEGSKL AEFCCGHKKNGMVNVVNKRCAHRGCTNRPCFGVEGSKLAEFCSAHKLNGM VDVVNKRCAHHGCTKRPYFGVWGSKLAEFCCGHKQNGMVNVVNKRCAHRG CTKRPCFGVEGSKHAELCSEHKKDGMVDVVKKRSAHHGCTNRPCFGVEGS KLAELCSEHKKDGMVDVVNKRCIRPGCTNLPSYGVAGSRTRKCCARHADK GMVNLSKFSRGSSGVGIGANELGRDRSAGSQLAAAEQLRRNCSSFLSSQV EASSASSNSSSSSSRGGGSGGARQIPTDEPAPPSPLEAAVDEGPVPREDD HSSEAQGVVAVKTEVTVPSKMGPNEDPPGGAAGAAGGVPPFEQAVPFSEP ESSVKPEVGYSFPSKGKETGGVGGPSEDAAGSHPRGRRGAAGEGREEGQR RAKRSRRGQ* back to topmRNA from alignment at L-elsbetiae_contig6321:910..4637+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6321.14966.1 ID=mRNA_L-elsbetiae_contig6321.14966.1|Name=mRNA_L-elsbetiae_contig6321.14966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3728bp|location=Sequence derived from alignment at L-elsbetiae_contig6321:910..4637+ (Laminarionema elsbetiae ELsaHSoW15) GGCCAGAGGGGGCGACCCAGCGATCCACTATGGAGGCGGAGTAGTGACCA
GACAGCAGAGAGAGGGGAAGAGAAAAATAGAGAAGGAAAGAAAGAGAAGT
TCTTTCCCCATCCTTTATATCCGGCTGTTCTCTGTCTCGTTCTTGGCGGC
GGCAACAGAGGCTAGGGAAGATGCCGTCGACGGAATGCAGCCACCGTGGC
TGCACCAAGCGGCCGTATTTCGGCGTGGAGGGGAGCAAGCACGTGGAGTT
CTGCTCTGGGCACAAGAAAAACGGGATGGTGAATGTCGTCAACAAGAGGT
GTGCCCACCATGGCTGCACCAAACAGCCGTATTTCGGTGTGGAGGGTAGC
AAGCTGACGGTGTCCTGCTCTGCACACAAGAAGGACGGGATGGTAGATGT
CGTCAACAAGAGGTGTGCCCACCATGGCTGCACCAAGCGGCCGTATTTCG
GTGTGGAGGGGAGCAAGCTCGCGGAGTTCTGCTGTGGGCACAAGAAAAAC
GGGATGGTGAATGTCGTCAACAAGAGGTGTGCCCACCGTGGCTGCACCAA
TCGGCCGTGTTTCGGTGTGGAGGGGAGCAAGCTCGCGGAGTTCTGTTCTG
CACACAAGCTAAACGGGATGGTAGATGTCGTCAACAAGAGGTGTGCCCAC
CATGGCTGCACCAAGCGGCCGTATTTCGGTGTGTGGGGGAGCAAGCTCGC
GGAGTTCTGCTGTGGGCACAAGCAAAACGGGATGGTGAATGTCGTCAACA
AGAGGTGTGCCCACCGTGGCTGCACCAAGCGGCCGTGTTTCGGTGTGGAG
GGGAGCAAGCACGCGGAGTTGTGCTCTGAACACAAGAAGGACGGGATGGT
AGATGTCGTCAAGAAGAGGAGTGCCCACCATGGCTGCACCAATCGGCCGT
GTTTCGGTGTGGAGGGGAGCAAGCTCGCGGAGTTGTGCTCTGAACACAAG
AAGGACGGGATGGTAGATGTCGTCAACAAGAGGTGTATCCGCCCGGGGTG
CACCAACCTACCATCCTACGGCGTGGCAGGGAGTCGAACGAGAAAGTGCT
GTGCCCGGCACGCAGACAAAGGAATGGTCAACCTCAGCAAATTCAGCCGT
GGGTCGAGCGGTGTTGGTATAGGGGCCAACGAGCTCGGGCGTGACAGATC
AGCAGGGTCACAGCTTGCCGCCGCGGAACAACTGCGGAGGAACTGCTCAT
CTTTTTTGTCCAGCCAGGTAGAGGCATCCTCAGCCAGCAGCAACAGCAGC
AGCAGCAGCAGCAGGGGGGGGGGCAGCGGGGGTGCCCGCCAGATCCCCAC
CGACGAACCGGCGCCTCCATCCCCGTTAGAAGCAGCCGTAGACGAAGGGC
CTGTCCCAAGAGAAGACGACCATTCTTCGGAGGCACAAGGAGTCGTTGCG
GTGAAGACGGAAGTGACGGTCCCCTCGAAGATGGGCCCCAATGAAGACCC
CCCTGGAGGAGCAGCGGGAGCAGCAGGAGGAGTGCCCCCCTTCGAGCAAG
CTGTTCCATTCTCGGAGCCAGAGTCATCGGTGAAGCCGGAAGTGGGGTAC
TCTTTCCCGTCAAAGGGCAAGGAAACTGGAGGTGAGCAAGCACTGTTTTT
CCTTTCCTGGCTGGAAGTTCGGTTGGTGTGGTCTACAGCCTTCACTGCCG
GCAGGAGCCGTTGGTCTAGACCTGGCACACACTTTTGTATTTTGGCTGTC
GTGTAGGCGTGTCTGCCGACTGTAACATGTCACCGTCGGTATCCACCAGT
CTCATATCCTTTGAACGTACTCCCTGCGGCACCACGGATGGGAACTGCCA
CAGATGATGGCTTAGCTCTCGGCCCAAATGATCTAGAACCGTGGGCACAC
GCCGGCATCCTCCCGTATGCTTTTTGTCGTTGGGGAAATTGCCATGTCAC
GTCAACTTGTGTGTCCGTTCTTGTCCCGTTTAATGTCGTATTGACTTCCA
ACTTTCGTGATGGCTCGTTCGAGTCTTACATGATGCGAAATTGTACCCCC
TCCTTCCTCCGGACGGTTTACGACCGAACATGTTGGTGCCACATCTCCTA
TGCACATCTCTTCAGTGCTGCTGCGAGGCGCCGAGTCATACAGGCACTCT
CGGAACATTTTCGTTCTGTGCGCACGTGGAGAAGTCCAGACCCCCGAGTG
CGACCCGGCTTGTACCCACACCAAAACCAGCTAACTCGTGGTACTTAATC
CGCTGCTGGTTTCTCTAGCGCTCGGGGTTCTTCCACTCCTCCGTGCTGTT
TGCCGCTTTGCTTGTGTGTCTAGCGGCACGACGCCTTGAGACAGACGAGT
AGATCGTTCCCGGCTGAACTTACCACCCTTGAGGTCGGCGGTAGAATCGT
TCATTGATATCGTTGGATGTCTCACCCTGCACCCCTCAAGCGATCGCTGA
CCAACGCTGTTTTGTGCCGTTTTGGTTCTGTGGGTCGTCCCTCCCCTTTG
GGTGCAGGTGTCGGCGGTCCTAGTGAAGACGCTGCAGGGAGCCATCCTCG
AGGGCGGCGCGGAGCGGCTGGAGAAGGACGTGAAGAGGGCCAAAGACGGG
CCAAGGTGAGGAACGCCAGCTGCGCTGCGGATGACGGTACTGCCTGTGTA
GTCTTGCTGGTTGCTGACTTGTGTTTGCGCGTAGATGGCTGTTCGTGGGC
GCTGCCCGGGGCATATAGAGCCATCCACCAGCGGATGTTGGCGCCGCATC
CAAGAGAATATATCTCGCGCCGCACTGCTTTTTGTCGTGTGCCGGTGAAT
TGCGCATGGCATGGTGTTCGATGTGTTTCATGGTACGGCGGTGTCCATTG
TTCTGGGCAAGATTCGATTGTTTTGTCGTTTTATACCTACATCTTCGGTT
TCACATGGCTGCTTATTGCTTTGGTTGCCGCTCGCTAAACTCTCTTGGCG
TACCTACCCCGCTGGAAACATTTGCAGACCACTCGCTTCACAACGCCACA
CTGACACTGGAAGGAAAGTGCGATTTGAGAACGGATGGTCTGCGCGATTT
GCACGCCACTGCGACCGTTTTAACTTGTTCTAACGTCGTGTTTGCCACTC
CACCTCCCGTTTGTATTTGATGTTTTTTTCGAAGCGCTCTCGACGAGGCC
AATGACGTGCCAGACGGGGCGACGTAGAGAGAGAGGGACGTGGGGCTTTG
GCAAGGTCGCCAAGGTTGCAGGACGGAAGATAAAGCAAGACGTTGCCGGA
GATGTCGGGGTATCGTCATGAGGGCATGTGATTTTATTGGTGGGGATGGA
GTATTTCTTGTCTTTTGGGTTGTTGTTTGACCTTGACTTGCTGTGTTTCT
GTCGTCTTAGGGTGATTACTGTAGCTGCAACGTTATTCAACCCTCTCGAG
GGGCTTGTAGGCGAACCCAGGGCCTCGCAGCCGATCGAATTACGACGGTA
TCGACTTCGGCCAATTAATGCAATAACTACAGCTACAGTAGCTGTTCTAG
AAACTCCACGTCGAGTAGCCAACTTTGTGTCTAGTCATGGAACAGCTTCT
TCTCCGTCGCGCGGGGGTTGATTGTAGTTCTGACGAACGTGCGTCGACAT
AATAATCGCCTTTGTACCTGACTTAATTTGGCGTATCCTGTGAGGTGCGC
CACCGAGCCAGCTGTACTCTTGTAGGTACTGATATTCACTCTTGATAGAC
CCCTGCTTATCCCTTGCAAGAAATACGAAAAAAGGAAAACAACAACCTAA
AATACATTTCTACTTCAGACCCATCAGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6321:910..4637+ >mRNA_L-elsbetiae_contig6321.14966.1 ID=mRNA_L-elsbetiae_contig6321.14966.1|Name=mRNA_L-elsbetiae_contig6321.14966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3060bp|location=Sequence derived from alignment at L-elsbetiae_contig6321:910..4637+ (Laminarionema elsbetiae ELsaHSoW15) ATGCCGTCGACGGAATGCAGCCACCGTGGCTGCACCAAGCGGCCGTATTT CGGCGTGGAGGGGAGCAAGCACGTGGAGTTCTGCTCTGGGCACAAGAAAA ACGGGATGGTGAATGTCGTCAACAAGAGGTGTGCCCACCATGGCTGCACC AAACAGCCGTATTTCGGTGTGGAGGGTAGCAAGCTGACGGTGTCCTGCTC TGCACACAAGAAGGACGGGATGGTAGATGTCGTCAACAAGAGGTGTGCCC ACCATGGCTGCACCAAGCGGCCGTATTTCGGTGTGGAGGGGAGCAAGCTC GCGGAGTTCTGCTGTGGGCACAAGAAAAACGGGATGGTGAATGTCGTCAA CAAGAGGTGTGCCCACCGTGGCTGCACCAATCGGCCGTGTTTCGGTGTGG AGGGGAGCAAGCTCGCGGAGTTCTGTTCTGCACACAAGCTAAACGGGATG GTAGATGTCGTCAACAAGAGGTGTGCCCACCATGGCTGCACCAAGCGGCC GTATTTCGGTGTGTGGGGGAGCAAGCTCGCGGAGTTCTGCTGTGGGCACA AGCAAAACGGGATGGTGAATGTCGTCAACAAGAGGTGTGCCCACCGTGGC TGCACCAAGCGGCCGTGTTTCGGTGTGGAGGGGAGCAAGCACGCGGAGTT GTGCTCTGAACACAAGAAGGACGGGATGGTAGATGTCGTCAAGAAGAGGA GTGCCCACCATGGCTGCACCAATCGGCCGTGTTTCGGTGTGGAGGGGAGC AAGCTCGCGGAGTTGTGCTCTGAACACAAGAAGGACGGGATGGTAGATGT CGTCAACAAGAGGTGTATCCGCCCGGGGTGCACCAACCTACCATCCTACG GCGTGGCAGGGAGTCGAACGAGAAAGTGCTGTGCCCGGCACGCAGACAAA GGAATGGTCAACCTCAGCAAATTCAGCCGTGGGTCGAGCGGTGTTGGTAT AGGGGCCAACGAGCTCGGGCGTGACAGATCAGCAGGGTCACAGCTTGCCG CCGCGGAACAACTGCGGAGGAACTGCTCATCTTTTTTGTCCAGCCAGGTA GAGGCATCCTCAGCCAGCAGCAACAGCAGCAGCAGCAGCAGCAGGGGGGG GGGCAGCGGGGGTGCCCGCCAGATCCCCACCGACGAACCGGCGCCTCCAT CCCCGTTAGAAGCAGCCGTAGACGAAGGGCCTGTCCCAAGAGAAGACGAC CATTCTTCGGAGGCACAAGGAGTCGTTGCGGTGAAGACGGAAGTGACGGT CCCCTCGAAGATGGGCCCCAATGAAGACCCCCCTGGAGGAGCAGCGGGAG CAGCAGGAGGAGTGCCCCCCTTCGAGCAAGCTGTTCCATTCTCGGAGCCA GAGTCATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCGTCAAAGGGCAA GGAAACTGGAGATGCCGTCGACGGAATGCAGCCACCGTGGCTGCACCAAG CGGCCGTATTTCGGCGTGGAGGGGAGCAAGCACGTGGAGTTCTGCTCTGG GCACAAGAAAAACGGGATGGTGAATGTCGTCAACAAGAGGTGTGCCCACC ATGGCTGCACCAAACAGCCGTATTTCGGTGTGGAGGGTAGCAAGCTGACG GTGTCCTGCTCTGCACACAAGAAGGACGGGATGGTAGATGTCGTCAACAA GAGGTGTGCCCACCATGGCTGCACCAAGCGGCCGTATTTCGGTGTGGAGG GGAGCAAGCTCGCGGAGTTCTGCTGTGGGCACAAGAAAAACGGGATGGTG AATGTCGTCAACAAGAGGTGTGCCCACCGTGGCTGCACCAATCGGCCGTG TTTCGGTGTGGAGGGGAGCAAGCTCGCGGAGTTCTGTTCTGCACACAAGC TAAACGGGATGGTAGATGTCGTCAACAAGAGGTGTGCCCACCATGGCTGC ACCAAGCGGCCGTATTTCGGTGTGTGGGGGAGCAAGCTCGCGGAGTTCTG CTGTGGGCACAAGCAAAACGGGATGGTGAATGTCGTCAACAAGAGGTGTG CCCACCGTGGCTGCACCAAGCGGCCGTGTTTCGGTGTGGAGGGGAGCAAG CACGCGGAGTTGTGCTCTGAACACAAGAAGGACGGGATGGTAGATGTCGT CAAGAAGAGGAGTGCCCACCATGGCTGCACCAATCGGCCGTGTTTCGGTG TGGAGGGGAGCAAGCTCGCGGAGTTGTGCTCTGAACACAAGAAGGACGGG ATGGTAGATGTCGTCAACAAGAGGTGTATCCGCCCGGGGTGCACCAACCT ACCATCCTACGGCGTGGCAGGGAGTCGAACGAGAAAGTGCTGTGCCCGGC ACGCAGACAAAGGAATGGTCAACCTCAGCAAATTCAGCCGTGGGTCGAGC GGTGTTGGTATAGGGGCCAACGAGCTCGGGCGTGACAGATCAGCAGGGTC ACAGCTTGCCGCCGCGGAACAACTGCGGAGGAACTGCTCATCTTTTTTGT CCAGCCAGGTAGAGGCATCCTCAGCCAGCAGCAACAGCAGCAGCAGCAGC AGCAGGGGGGGGGGCAGCGGGGGTGCCCGCCAGATCCCCACCGACGAACC GGCGCCTCCATCCCCGTTAGAAGCAGCCGTAGACGAAGGGCCTGTCCCAA GAGAAGACGACCATTCTTCGGAGGCACAAGGAGTCGTTGCGGTGAAGACG GAAGTGACGGTCCCCTCGAAGATGGGCCCCAATGAAGACCCCCCTGGAGG AGCAGCGGGAGCAGCAGGAGGAGTGCCCCCCTTCGAGCAAGCTGTTCCAT TCTCGGAGCCAGAGTCATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCG TCAAAGGGCAAGGAAACTGGAGGTGTCGGCGGTCCTAGTGAAGACGCTGC AGGGAGCCATCCTCGAGGGCGGCGCGGAGCGGCTGGAGAAGGACGTGAAG AGGGCCAAAGACGGGCCAAGGTGTCGGCGGTCCTAGTGAAGACGCTGCAG GGAGCCATCCTCGAGGGCGGCGCGGAGCGGCTGGAGAAGGACGTGAAGAG GGCCAAAGACGGGCCAAGCGCTCTCGACGAGGCCAATGACGCTCTCGACG AGGCCAATGA back to top
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