mRNA_L-elsbetiae_contig632.14965.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig632.14965.1
Unique NamemRNA_L-elsbetiae_contig632.14965.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig632.14965.1 vs. uniprot
Match: D7FZS2_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS2_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 5.770e-78
Identity = 182/368 (49.46%), Postives = 214/368 (58.15%), Query Frame = 1 
Query:  121 IAAVLARGHSIVKEGESATQGASAALPSAPWHTAIFAQVRLGAARQRKLDAVAAAREETYAKYANIYKDHAAERYVRAIEASRQQRGGLEAYRRRVVAASTDAERYRGYAETSTPRDGGRGEGAEEGTGGGPRLRLLRGDDDGDGSIPSGSSASFNDRXXXXXXXGLSQGESRVTSEGSLSTSRESTGDDXXXXXXXXXXXXXXXXVADEGATAVWLGEESAAAEGXXXXXXXXXXXFAEGGHAPTAARRGRGXXXXXXXXXRGSFVDVVPFNNIRAKYLRPWDDTELSGPYHVVPSPDWGAGGAAGSRSRGSSMGGPSIPTSTNRAMINAAGSGRTMEAYHRTAKQGDPVTHQ-RSKTLNWKERREW 1221
            +AAVLA+ +S++KEGE AT+GASAALP APWH  IFAQVRL  ARQRKL  V+ ARE  YA+YANIYKDHAA  Y R IEASRQ+RGGLEAYRRRVV ASTDAERYRGY E  TPRD    E  E+G      L LL  D    GS  +  +AS N R       G S   S    + SLS+ +E    D                  D  A    +G+     E              +   A T      G         RG FVDVVPFNNIRAKYLRPW+DTELS PYHV PSP W A  A G+ S  SS+G  S  TST+    +AAGSG+T+EAY +T  + +P TH+ RS+TLNWK+ +EW
Sbjct:  152 VAAVLAKDYSVLKEGEGATKGASAALPPAPWHIEIFAQVRLDTARQRKLHGVSVAREGVYARYANIYKDHAARTYARTIEASRQERGGLEAYRRRVVKASTDAERYRGYVEMDTPRDDPHWE--EDG------LGLLPADG---GSTSTNYAASSNGRESGSVA-GFSPSRSSANVDVSLSSEKE----DGAGRGLVHGDETARRWPVDRAAPECSMGD---GGEPEAPAVSRLDSVTDDENTATTRRSFDHGGGGG-----RGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRADRAVGTPSLASSVG--SSITSTD--AFSAAGSGQTLEAYRKTNLR-NPATHRPRSRTLNWKDGKEW 490
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BLAST of mRNA_L-elsbetiae_contig632.14965.1 vs. uniprot
Match: A0A6H5KP45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP45_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.090e-57
Identity = 152/337 (45.10%), Postives = 182/337 (54.01%), Query Frame = 1 
Query:  232 QVRLGAARQRKLDAVAAAREETYAKYANIYKDHAAERYVRAIEASRQQRGGLEAYRRRVVAASTDAERYRGYAETSTPRDGGRGEGAEEGTGGGPRLRLLRGDDDGDGSIPSGSSASFNDRXXXXXXXGLSQGESRVTSEGSLSTSRESTGDDXXXXXXXXXXXXXXXXVADEGATAVWLGEESAAAEGXXXXXXXXXXX------FAEGGHAPTAARRGRGXXXXXXXXXRGSFVDVVPFNNIRAKYLRPWDDTELSGPYHVVPSPDWGAGGAAGSRSRGSSMGGPSIPTSTNRAMINAAGSGRTMEAYHRTAKQGDPVTHQ-RSKTLNWKERREW 1221
            QVRL  ARQRKL  V+ ARE  Y++YANIYKDHAA+ Y R IEASRQ+RGGLEAYR RVV +S DA+RYRGY E  TPRD    E  E+G      L LL  +D   GS  +  +AS N R       G S   S    + SLS+ +E    +                 A EG+     GE  A A                   F++GG                    RG FVDVVPFNNIRAKYLRPW+DTELS PYHV PSP W AG A G+ S  SS+G  S  TST+   ++AA SG+ +EAY R A   +P TH+  S TLNWK+ +EW
Sbjct:    7 QVRLETARQRKLHGVSVAREGVYSRYANIYKDHAAQTYARTIEASRQERGGLEAYRHRVVKSSMDAQRYRGYVEMDTPRDDPHWE--EDG------LGLLPAND---GSTSTNCAASSNGRKSGGVA-GFSPARSSAKVDVSLSSEKEDGAGEGLVHGDETVEVRPGDGAAPEGSVGE-NGESEARAVSRLDSVTDDENTATTRRSFSDGG-----------------IGGRGCFVDVVPFNNIRAKYLRPWNDTELSRPYHVAPSPTWRAGRAVGAPSLASSVG--SSITSTD--ALSAAESGQALEAY-RKATLRNPATHRPHSSTLNWKDGKEW 308
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig632.14965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZS2_ECTSI5.770e-7849.46Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KP45_9PHAE1.090e-5745.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig632contigL-elsbetiae_contig632:20827..23666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.2
Seed ortholog evalue9.9e-68
Seed eggNOG ortholog2880.D7FZS2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-21_004140.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1233
Cds size1233
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig632.14965.1prot_L-elsbetiae_contig632.14965.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig632 20827..23666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.1958055-CDS-L-elsbetiae_contig632:20826..209191622816697.1958055-CDS-L-elsbetiae_contig632:20826..20919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 20827..20919 +
1691683747.6262608-CDS-L-elsbetiae_contig632:20826..209191691683747.6262608-CDS-L-elsbetiae_contig632:20826..20919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 20827..20919 +
1622816697.2095156-CDS-L-elsbetiae_contig632:21380..215211622816697.2095156-CDS-L-elsbetiae_contig632:21380..21521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 21381..21521 +
1691683747.6382565-CDS-L-elsbetiae_contig632:21380..215211691683747.6382565-CDS-L-elsbetiae_contig632:21380..21521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 21381..21521 +
1622816697.2214782-CDS-L-elsbetiae_contig632:22667..236661622816697.2214782-CDS-L-elsbetiae_contig632:22667..23666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 22668..23666 +
1691683747.656231-CDS-L-elsbetiae_contig632:22667..236661691683747.656231-CDS-L-elsbetiae_contig632:22667..23666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 22668..23666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig632.14965.1

>prot_L-elsbetiae_contig632.14965.1 ID=prot_L-elsbetiae_contig632.14965.1|Name=mRNA_L-elsbetiae_contig632.14965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=411bp
ADKGHLEVVKALLVGGAKADVLDHDHWSPRQSAEFRGFMEIAAVLARGHS
IVKEGESATQGASAALPSAPWHTAIFAQVRLGAARQRKLDAVAAAREETY
AKYANIYKDHAAERYVRAIEASRQQRGGLEAYRRRVVAASTDAERYRGYA
ETSTPRDGGRGEGAEEGTGGGPRLRLLRGDDDGDGSIPSGSSASFNDREG
SGGGAGLSQGESRVTSEGSLSTSRESTGDDSSTAPSAAAAGKGGGGVADE
GATAVWLGEESAAAEGPAAALASGGGGFAEGGHAPTAARRGRGGDGGDGG
GGRGSFVDVVPFNNIRAKYLRPWDDTELSGPYHVVPSPDWGAGGAAGSRS
RGSSMGGPSIPTSTNRAMINAAGSGRTMEAYHRTAKQGDPVTHQRSKTLN
WKERREWGAR*
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mRNA from alignment at L-elsbetiae_contig632:20827..23666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig632.14965.1 ID=mRNA_L-elsbetiae_contig632.14965.1|Name=mRNA_L-elsbetiae_contig632.14965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2840bp|location=Sequence derived from alignment at L-elsbetiae_contig632:20827..23666+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGACAAAGGGCACCTGGAAGTCGTCAAAGCGTTGCTGGTGGGCGGGGC
AAAGGCAGACGTGTTAGATCACGACCATTGGTCACCTCGCCAGGTAAGCA
AGCGACTGAACGCACATGCATACGCCTGTTCTTGTCCAAGAATGCACACC
CAGAGCTTTTTTCAGGGAGTGTATACCTCGACTTCGAACAACTGAACAAC
TTGCTTCTTGATCTGTTGTGGGCGCTGCGAACATTTCTTTCGGAACGCTG
AGAACACAAATTTGTGACGAAGCTGTTGCGCTGGCTGGCACCCGAGAGCT
CTAAGTCCCGCCATGTTTACGACTTTCAGTCCTACATGCTGATCCAAATT
CTGCACAGCTGGCACCCGAAGACCAGGACAAGAAGCCACGAGCCGTTGGC
ATGCAATATACACCTCAAATCGCAGTAGCTCTCTCCAAACCTCTAGCTTC
CTGCGGGCTAATAGTCCCCCTGCTCTCCTGGCCTGACGAGGGGTGGTAGT
TCGAACGCCCACCCGCCCTTTCCCTTGCTCCTCTCTCGTTTGTGATCACG
CCAGAGTGCAGAATTCAGAGGTTTCATGGAGATCGCCGCGGTGCTGGCGA
GGGGGCATTCCATCGTGAAAGAGGGGGAAAGCGCCACGCAGGGTGCTTCG
GCGGCTTTGCCCTCGGCCCCATGGCACACTGCAATATTTGCCCAGGTGAA
TACCGTAGGTGACACAAGATGAGATACGTACCGAAGATAAGACATCCTCT
AAACAAACTCTACCCAATACCACACCCCGTTATACTTTTTTGGGCACAAA
AAAATGGTCATTTGTCACACCGGTGACATGAGATACCACATCCCCTGACG
TTATGCCGACTTTGATTCACGGAGCCCCCTTAACACATCGTGTGGTACTG
CCGTGTTTTCACGTTTTCACACGCCAACGCACACACACGAGCATTCAATC
AACACCGCTGGTTGCAGACAAACGCACATCAGATGGGGGCAGAGAGCGTA
GTCATCCCTGCTGAAAATGACGCGGGTAAGAGGGCGTAAGCTACATCTGC
ACCAGCGCCTTCATGCTCGATCACGTCATTTTCTTCGAAACACCCCGCCG
CCTCCAAGCCAAGCGATGTTGGTACTCCAGCAGCATTCTTGCCTGTCGCC
GCATGAGCTGCCGACCTGTCGCCGCATGAGCTGCTGAAGGCCGCACAACA
GAGAGTCTGCTGAGACCCGCAGAACAGAGCCTGCTGTTTGACAGCGGCAA
TCTGTTGATGATAGCGATATCACACCCCCTTCAAGAACTTATTTGGTATG
CAGTACCAATCTATTAGCATTGGCACAGAGATATCACACCCCTTCTTTAT
CATACCCCCTCGTTTTATCATACTCCCTTCAAGGAGTTGTTTGGCAGCGG
CAATCGGCTGTCGCATATGGTACCACACCCCCTTGGTTTATCACACCCCC
TGGTTGCGGGCTCCACGACATGCACTGTCGGTATGGCACGGGCGACAGAA
GATAAGACACTCCTTACACAAAAGCACACCCTGTGACCAGTTTTTAAAGC
TCAATTTTGTTATCACAGGGGTGTCTTATCTTATGCCCCCCTGCTACGGC
AAGTAAGTTCGGCATGCTTTGCTGTAACATGCGCATGGACTCCCTCGTAT
GTAGTGGGGCGAGACTTTTTCCAGGCTCCCAGTCCGGCAGGCCCCGCCCT
GTGCACGTTCTGGGCCGCCGCATGTTATCTATGTAGCTTCCGCTGTAATG
CATTCCTGAGGGCGATCAAGTCAAGTGTGCCCCGCAACAGCCAAATGACC
CCCCGCCGCGGCCGTCCTGTGGGCGGCTCAAACTGTTTCAGGTCCGCCTG
GGTGCCGCGCGGCAGCGAAAGCTCGACGCCGTCGCCGCCGCGCGCGAAGA
AACGTACGCGAAGTACGCCAACATCTACAAGGACCACGCCGCCGAGAGGT
ACGTGCGGGCCATCGAGGCGTCCCGGCAGCAGAGGGGGGGGCTCGAGGCA
TACCGCCGACGGGTCGTCGCGGCGTCGACAGACGCGGAGCGCTACAGAGG
GTACGCCGAGACGAGCACGCCCAGAGACGGCGGGCGGGGGGAGGGGGCGG
AGGAGGGGACGGGGGGCGGCCCGAGGCTCCGGCTGCTGCGGGGAGACGAC
GACGGCGACGGCAGCATCCCATCGGGTTCTTCCGCATCTTTCAACGATCG
AGAGGGTTCCGGCGGCGGCGCCGGGCTATCGCAAGGAGAGAGCCGGGTCA
CGTCGGAGGGTTCCCTTTCCACCAGCCGCGAATCGACGGGAGACGATTCT
TCCACCGCACCAAGCGCTGCTGCCGCGGGAAAGGGAGGGGGAGGGGTTGC
AGACGAAGGGGCCACAGCGGTTTGGCTGGGAGAAGAAAGCGCGGCAGCTG
AGGGCCCGGCGGCAGCGCTGGCTTCGGGTGGGGGCGGCTTCGCGGAGGGC
GGACACGCCCCGACAGCAGCGAGGAGAGGGCGAGGAGGCGATGGTGGTGA
TGGTGGTGGTGGTCGTGGTTCCTTCGTGGACGTGGTTCCGTTCAACAATA
TCCGCGCCAAGTACTTGAGACCGTGGGACGACACGGAGTTGTCCGGGCCG
TACCACGTCGTGCCGTCGCCTGATTGGGGGGCGGGTGGCGCAGCCGGGAG
CCGGAGCCGAGGTTCAAGCATGGGTGGTCCATCCATCCCCACCTCTACCA
ACAGGGCTATGATTAATGCCGCGGGAAGCGGCCGGACGATGGAAGCCTAC
CACCGCACAGCCAAGCAGGGGGATCCGGTGACCCACCAACGCAGCAAGAC
ATTGAACTGGAAGGAGAGGAGAGAGTGGGGCGCGCGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig632:20827..23666+

>mRNA_L-elsbetiae_contig632.14965.1 ID=mRNA_L-elsbetiae_contig632.14965.1|Name=mRNA_L-elsbetiae_contig632.14965.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2466bp|location=Sequence derived from alignment at L-elsbetiae_contig632:20827..23666+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGACAAAGGGCACCTGGAAGTCGTCAAAGCGTTGCTGGTGGGCGGGGC
AAAGGCAGACGTGTTAGATCACGACCATTGGTCACCTCGCCAGGCTGACA
AAGGGCACCTGGAAGTCGTCAAAGCGTTGCTGGTGGGCGGGGCAAAGGCA
GACGTGTTAGATCACGACCATTGGTCACCTCGCCAGAGTGCAGAATTCAG
AGGTTTCATGGAGATCGCCGCGGTGCTGGCGAGGGGGCATTCCATCGTGA
AAGAGGGGGAAAGCGCCACGCAGGGTGCTTCGGCGGCTTTGCCCTCGGCC
CCATGGCACACTGCAATATTTGCCCAGAGTGCAGAATTCAGAGGTTTCAT
GGAGATCGCCGCGGTGCTGGCGAGGGGGCATTCCATCGTGAAAGAGGGGG
AAAGCGCCACGCAGGGTGCTTCGGCGGCTTTGCCCTCGGCCCCATGGCAC
ACTGCAATATTTGCCCAGGTCCGCCTGGGTGCCGCGCGGCAGCGAAAGCT
CGACGCCGTCGCCGCCGCGCGCGAAGAAACGTACGCGAAGTACGCCAACA
TCTACAAGGACCACGCCGCCGAGAGGTACGTGCGGGCCATCGAGGCGTCC
CGGCAGCAGAGGGGGGGGCTCGAGGCATACCGCCGACGGGTCGTCGCGGC
GTCGACAGACGCGGAGCGCTACAGAGGGTACGCCGAGACGAGCACGCCCA
GAGACGGCGGGCGGGGGGAGGGGGCGGAGGAGGGGACGGGGGGCGGCCCG
AGGCTCCGGCTGCTGCGGGGAGACGACGACGGCGACGGCAGCATCCCATC
GGGTTCTTCCGCATCTTTCAACGATCGAGAGGGTTCCGGCGGCGGCGCCG
GGCTATCGCAAGGAGAGAGCCGGGTCACGTCGGAGGGTTCCCTTTCCACC
AGCCGCGAATCGACGGGAGACGATTCTTCCACCGCACCAAGCGCTGCTGC
CGCGGGAAAGGGAGGGGGAGGGGTTGCAGACGAAGGGGCCACAGCGGTTT
GGCTGGGAGAAGAAAGCGCGGCAGCTGAGGGCCCGGCGGCAGCGCTGGCT
TCGGGTGGGGGCGGCTTCGCGGAGGGCGGACACGCCCCGACAGCAGCGAG
GAGAGGGCGAGGAGGCGATGGTGGTGATGGTGGTGGTGGTCGTGGTTCCT
TCGTGGACGTGGTTCCGTTCAACAATATCCGCGCCAAGTACTTGAGACCG
TGGGACGACACGGAGTTGTCCGGGCCGTACCACGTCGTGCCGTCGCCTGA
TTGGGGGGCGGGTGGCGCAGCCGGGAGCCGGAGCCGAGGTTCAAGCATGG
GTGGTCCATCCATCCCCACCTCTACCAACAGGGCTATGATTAATGCCGCG
GGAAGCGGCCGGACGATGGAAGCCTACCACCGCACAGCCAAGCAGGGGGA
TCCGGTGACCCACCAACGCAGCAAGACATTGAACTGGAAGGAGAGGAGAG
AGTGGGGCGCGCGCTAAGTCCGCCTGGGTGCCGCGCGGCAGCGAAAGCTC
GACGCCGTCGCCGCCGCGCGCGAAGAAACGTACGCGAAGTACGCCAACAT
CTACAAGGACCACGCCGCCGAGAGGTACGTGCGGGCCATCGAGGCGTCCC
GGCAGCAGAGGGGGGGGCTCGAGGCATACCGCCGACGGGTCGTCGCGGCG
TCGACAGACGCGGAGCGCTACAGAGGGTACGCCGAGACGAGCACGCCCAG
AGACGGCGGGCGGGGGGAGGGGGCGGAGGAGGGGACGGGGGGCGGCCCGA
GGCTCCGGCTGCTGCGGGGAGACGACGACGGCGACGGCAGCATCCCATCG
GGTTCTTCCGCATCTTTCAACGATCGAGAGGGTTCCGGCGGCGGCGCCGG
GCTATCGCAAGGAGAGAGCCGGGTCACGTCGGAGGGTTCCCTTTCCACCA
GCCGCGAATCGACGGGAGACGATTCTTCCACCGCACCAAGCGCTGCTGCC
GCGGGAAAGGGAGGGGGAGGGGTTGCAGACGAAGGGGCCACAGCGGTTTG
GCTGGGAGAAGAAAGCGCGGCAGCTGAGGGCCCGGCGGCAGCGCTGGCTT
CGGGTGGGGGCGGCTTCGCGGAGGGCGGACACGCCCCGACAGCAGCGAGG
AGAGGGCGAGGAGGCGATGGTGGTGATGGTGGTGGTGGTCGTGGTTCCTT
CGTGGACGTGGTTCCGTTCAACAATATCCGCGCCAAGTACTTGAGACCGT
GGGACGACACGGAGTTGTCCGGGCCGTACCACGTCGTGCCGTCGCCTGAT
TGGGGGGCGGGTGGCGCAGCCGGGAGCCGGAGCCGAGGTTCAAGCATGGG
TGGTCCATCCATCCCCACCTCTACCAACAGGGCTATGATTAATGCCGCGG
GAAGCGGCCGGACGATGGAAGCCTACCACCGCACAGCCAAGCAGGGGGAT
CCGGTGACCCACCAACGCAGCAAGACATTGAACTGGAAGGAGAGGAGAGA
GTGGGGCGCGCGCTAA
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