mRNA_L-elsbetiae_contig632.14963.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig632.14963.1
Unique NamemRNA_L-elsbetiae_contig632.14963.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig632.14963.1 vs. uniprot
Match: A0A6H5JNQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.830e-28
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:  157 MSSQNRSKMGKTFAKMTTACPQQIAAYGMCLQAKSTAG-LERGACEEQFRSLKRCFQQAAKGVKATR 354
            MSSQNRSKMG+ FAKMTTACPQQIA YG CLQA STAG LERG C+EQF++LKRCFQQAAKG+KATR
Sbjct:    1 MSSQNRSKMGQAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAKGLKATR 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig632.14963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNQ3_9PHAE4.830e-2883.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig632contigL-elsbetiae_contig632:11097..13383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_006000.1
Exons3
Model size1102
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig632.14963.1prot_L-elsbetiae_contig632.14963.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig632 11842..13227 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.107119-UTR-L-elsbetiae_contig632:11096..118411622816697.107119-UTR-L-elsbetiae_contig632:11096..11841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig632 11097..11841 -
1691683747.571137-UTR-L-elsbetiae_contig632:11096..118411691683747.571137-UTR-L-elsbetiae_contig632:11096..11841Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig632 11097..11841 -
1622816697.1557183-UTR-L-elsbetiae_contig632:13227..133831622816697.1557183-UTR-L-elsbetiae_contig632:13227..13383Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig632 13228..13383 -
1691683747.6160314-UTR-L-elsbetiae_contig632:13227..133831691683747.6160314-UTR-L-elsbetiae_contig632:13227..13383Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig632 13228..13383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.117245-CDS-L-elsbetiae_contig632:11841..118681622816697.117245-CDS-L-elsbetiae_contig632:11841..11868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 11842..11868 -
1691683747.5827284-CDS-L-elsbetiae_contig632:11841..118681691683747.5827284-CDS-L-elsbetiae_contig632:11841..11868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 11842..11868 -
1622816697.1303065-CDS-L-elsbetiae_contig632:12397..125021622816697.1303065-CDS-L-elsbetiae_contig632:12397..12502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 12398..12502 -
1691683747.5928986-CDS-L-elsbetiae_contig632:12397..125021691683747.5928986-CDS-L-elsbetiae_contig632:12397..12502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 12398..12502 -
1622816697.1432204-CDS-L-elsbetiae_contig632:13158..132271622816697.1432204-CDS-L-elsbetiae_contig632:13158..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 13159..13227 -
1691683747.6047819-CDS-L-elsbetiae_contig632:13158..132271691683747.6047819-CDS-L-elsbetiae_contig632:13158..13227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig632 13159..13227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig632.14963.1

>prot_L-elsbetiae_contig632.14963.1 ID=prot_L-elsbetiae_contig632.14963.1|Name=mRNA_L-elsbetiae_contig632.14963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MSSQNRSKMGKTFAKMTTACPQQIAAYGMCLQAKSTAGLERGACEEQFRS
LKRCFQQAAKGVKATR*
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mRNA from alignment at L-elsbetiae_contig632:11097..13383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig632.14963.1 ID=mRNA_L-elsbetiae_contig632.14963.1|Name=mRNA_L-elsbetiae_contig632.14963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2287bp|location=Sequence derived from alignment at L-elsbetiae_contig632:11097..13383- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAAAAACGCCTCTTCCTACATTTTTCGTGGTTTGCGCGAAATAATAC
AAGTTCACCTTGCCCAGGGGCACCTCTTCACCGGTTGGAATCGGCCTACA
CCCTTCCTTGGCCTAAATACGCGCTCATCGTTGTAGCTCTCTTCTACCTC
TGCCGTATGTCGTCTCAGAATCGCTCCAAGATGGGCAAGACCTTCGCCAA
GATGACCACGGCATGTCCGCAGCAGGTGTGTGCGTTTCGACGGTCTGACG
GTGGGGTGGGGCCGGTCTTGTGTGCCTTGAGAGATGAGGACCTCGGGGCG
TGGTTTCTGAGTTACGGAAGTTATCCTACGCCCCACACCACAATCCCTCT
CACTCCCCTCCTCTCCTGCCCGAGCCGGGCGTGGGATATTTCTAGGTACA
AATAGACTATCCCGTGCCCGTTCGGAGATGGGATTGGTTCCGCCGCATTC
GGAAACTCGCAGAGTCGCAGAGCACGCTTTTGACTTTTGAAACGCATGTC
GTGCTGTCATATCAAGAGAGGGAAATGATCTACAAGAGGGCCAATTATCT
ATGACGATCTGTCGTGAACATGAAATACATACACATGTATCTTCTAGACT
CACCAGAGGACAACAACGGACACTTTCCTGCTGTGTAAAATAGCCAGCCC
TGCTCTGTCAACAGAGAGGTACTGCGGTAGTACATATTTTACCTACAGGA
TGTAGCCTCCTCTTGTACCATGCCGATGTTCCACCCTCAAACTCGGTAGC
GTTTCACATGTCATCCATGCTCCTTTTTCAAGTTTTTGGCTATCTCTGCT
CTACTGCTGTTATGTTTATATTAGGTACATACGGTGACTGAATGTTGCCT
GTTGATGTCCGGCGTAACTTGTGTGAGGCAGATCGCTGCGTATGGCATGT
GTTTACAAGCAAAGTCCACCGCGGGCTTAGAGCGAGGTGCATGTGAGGAG
CAGTTCAGGTCGCTGAAGCGGTGCTTCCAACAAGCGGTAAGCCCACAAGC
TACGAGGTAGTCGATACATAAAAGTCACTGAAGAAATTATTCAGAGTACT
CCGAGGGGATCTCGCAGTGCATCGCAACCTCGAGTCTTCATTCTCTTGAA
GCACGAACCACCCACCTGCTGTGTTTGCTTGGGCCAAAGCGACCAGCACG
TTCGAATGATGTTAATTGTCAGGAGATATCTCAATCCTCAAAGACGTCTT
GTTCGATTTGGTTCTTAGTACTCGCGGAGACCCGCAGCGTTGACTGGCAG
AGAGAGAGTGACCACCCTCGCACTTGACCCGTGTGCCCAGCTAAGTCGTT
CGACGGATGAAACTCAACGCTGGGCTTCATTGAGGCTGATTCCCGGGTGG
TGTGATCGTCCTGTTGCGCTCCGGTAGCCACACCATTCGTGTGTTAATCA
ACGTACTGTAACGCCATCACACATCTATGTTTGATAGCTGCCGCACACAC
GCAGTGGTATGCGCCTGCTGCATACTTCTGAGCTGTCTAATGGTATCCTC
GTTACATGCGTGCAGGCGAAGGGAGTAAAGGCTACCCGATGACATCTAGT
GGGAAGATATGTTTCATCGCCACGGCTATGCTGCTGGTGCCGATGGGGAT
TGCGATTTGCAATACACATGCTCAACCAGATGGGGGGTCGACGTCTGGTG
GTCACCCGCTCTGGTTCTTCATGGAAACTTCACGCCAAAAGAAGCTTCGC
GGGGCTGACAAGCGCAGTTTTGGAAGTTTATAGAGACCTGGGAGAAAATA
CTCATTTACGTGTGTGCCGTGGTCAGGGGTGACTTATATGCAAGCGATGT
ACCTCCCCTTGTCCGGCGATAAGCATTGTGCGTCGACCTTCTACTGTATT
TTCCGTGGGTGGTTGTGCGTGCGGAATTTGTGCTGGAAAGAGTAAATCGA
GGGTATTTAGGTGCTATGGTAGTCACGTGTTGGTGAAGCTCCGTTGTCGA
TGGCGTCCTCATTCGACACAATAAAGTAAGTCCCTCTTGTTTTGGTTTGA
AAATAGATGGCCTATGGAGTTGTAGGTTCCCAGGCTGCTTCCTTAGTTTT
TTTTGTAGTTATCGCAGTCTTTTGAGTATGAAGGCACAAGGAGCAAAAGT
CATGCATTTGTAAATGTTACTTATCCAACCTACACATATGATCAGTCCGC
GGGGTACGGGGTTTTTATGTACCCCGCCCGTGATTTCAGTGGAACGACTC
AGACTCAGCACTGCAGGTACAGAGCCTACTGATATCTTGCCAAGCTTACC
CACCCTCTTCAATCCCACGCGCCAGACCCGATACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig632:11097..13383-

>mRNA_L-elsbetiae_contig632.14963.1 ID=mRNA_L-elsbetiae_contig632.14963.1|Name=mRNA_L-elsbetiae_contig632.14963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig632:11097..13383- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCTCAGAATCGCTCCAAGATGGGCAAGACCTTCGCCAAGATGAC
CACGGCATGTCCGCAGCAGATGTCGTCTCAGAATCGCTCCAAGATGGGCA
AGACCTTCGCCAAGATGACCACGGCATGTCCGCAGCAGATCGCTGCGTAT
GGCATGTGTTTACAAGCAAAGTCCACCGCGGGCTTAGAGCGAGGTGCATG
TGAGGAGCAGTTCAGGTCGCTGAAGCGGTGCTTCCAACAAGCGATCGCTG
CGTATGGCATGTGTTTACAAGCAAAGTCCACCGCGGGCTTAGAGCGAGGT
GCATGTGAGGAGCAGTTCAGGTCGCTGAAGCGGTGCTTCCAACAAGCGGC
GAAGGGAGTAAAGGCTACCCGATGAGCGAAGGGAGTAAAGGCTACCCGAT
GA
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