mRNA_L-elsbetiae_contig6318.14959.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6318.14959.1
Unique NamemRNA_L-elsbetiae_contig6318.14959.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6318.14959.1 vs. uniprot
Match: A0A6H5KN53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN53_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 2.500e-60
Identity = 110/189 (58.20%), Postives = 128/189 (67.72%), Query Frame = 1 
Query:    1 VLTIQENLHLALARLAEAVREELHSVCSKPPAEEMLRGPRGGEPPGRYYGASTRK----------------------------------DFRDYFDAEEEEVARRLQPKSYTYLGALREDSKAKYVFDRTSHARKGSLAAHLRGDYEPKAEGYRGTNVHAATDWRPANTSLDRYASSGRDVMARIADSD 465
            VL +QENLHLAL RLAEA++ ++HSV S+  AEE+LRGP GGEPP RY GAS RK                                  DFR++FD EEE VAR+ QPK+Y +LG LRED KAKYVFDRTSH RKGSLAAHLRGDYEP  +GYRGTNVH+  DWR  NT+LDRYA +GR+ M R+A SD
Sbjct:  230 VLVVQENLHLALERLAEAIQVQVHSVSSRTFAEEILRGPPGGEPPERYCGASMRKGCEVIGLASTACMTMSTAPPPTGVTRTSPTLVMQDFREFFDNEEELVARQQQPKAYAHLGGLREDGKAKYVFDRTSHTRKGSLAAHLRGDYEPHPKGYRGTNVHSVADWRRPNTTLDRYAITGREAMERVAKSD 418
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BLAST of mRNA_L-elsbetiae_contig6318.14959.1 vs. uniprot
Match: D7FND0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND0_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.660e-42
Identity = 82/143 (57.34%), Postives = 99/143 (69.23%), Query Frame = 1 
Query:   40 RLAEAVREELHSVCSKPPAEEMLRGPRGGEPP-GRYYGASTRKDFRDYFDAEEEEVARRLQPKSYTYLGALREDSKAKYVFDRTSHARKGSLAAHLRGDYEPKAEGYRGTNVHAATDWRPANTSLDRYASSGRDVMARIADSD 465
            RL E++     S+CS   A          +PP G Y       DFRD+FD+EEE  AR+ QPK+Y +LG LRE+ KAKYVFDRTSH RKGSLAAHLRGDYEP+ +GYRGTNVH+  DWR  NT+LDRYA +GR+ M R+A SD
Sbjct:  163 RLKESLTWRWPSMCSTADARGANDDLSPQKPPKGSYLRQRGPTDFRDFFDSEEEMAARQQQPKAYAHLGGLREEGKAKYVFDRTSHTRKGSLAAHLRGDYEPRPKGYRGTNVHSVADWRRLNTTLDRYAITGREAMERVAKSD 305
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6318.14959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN53_9PHAE2.500e-6058.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FND0_ECTSI1.660e-4257.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6318contigL-elsbetiae_contig6318:2296..3689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_001250.1
Exons4
Model size466
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6318.14959.1prot_L-elsbetiae_contig6318.14959.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6318 2296..3689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.8222933-CDS-L-elsbetiae_contig6318:2295..23441622816696.8222933-CDS-L-elsbetiae_contig6318:2295..2344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 2296..2344 -
1691683747.3614159-CDS-L-elsbetiae_contig6318:2295..23441691683747.3614159-CDS-L-elsbetiae_contig6318:2295..2344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 2296..2344 -
1622816696.8349745-CDS-L-elsbetiae_contig6318:2720..28101622816696.8349745-CDS-L-elsbetiae_contig6318:2720..2810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 2721..2810 -
1691683747.3734171-CDS-L-elsbetiae_contig6318:2720..28101691683747.3734171-CDS-L-elsbetiae_contig6318:2720..2810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 2721..2810 -
1622816696.8462071-CDS-L-elsbetiae_contig6318:3155..33161622816696.8462071-CDS-L-elsbetiae_contig6318:3155..3316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 3156..3316 -
1691683747.3828979-CDS-L-elsbetiae_contig6318:3155..33161691683747.3828979-CDS-L-elsbetiae_contig6318:3155..3316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 3156..3316 -
1622816696.8561504-CDS-L-elsbetiae_contig6318:3524..36891622816696.8561504-CDS-L-elsbetiae_contig6318:3524..3689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 3525..3689 -
1691683747.3923903-CDS-L-elsbetiae_contig6318:3524..36891691683747.3923903-CDS-L-elsbetiae_contig6318:3524..3689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6318 3525..3689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6318.14959.1

>prot_L-elsbetiae_contig6318.14959.1 ID=prot_L-elsbetiae_contig6318.14959.1|Name=mRNA_L-elsbetiae_contig6318.14959.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
VLTIQENLHLALARLAEAVREELHSVCSKPPAEEMLRGPRGGEPPGRYYG
ASTRKDFRDYFDAEEEEVARRLQPKSYTYLGALREDSKAKYVFDRTSHAR
KGSLAAHLRGDYEPKAEGYRGTNVHAATDWRPANTSLDRYASSGRDVMAR
IADSD
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mRNA from alignment at L-elsbetiae_contig6318:2296..3689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6318.14959.1 ID=mRNA_L-elsbetiae_contig6318.14959.1|Name=mRNA_L-elsbetiae_contig6318.14959.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1394bp|location=Sequence derived from alignment at L-elsbetiae_contig6318:2296..3689- (Laminarionema elsbetiae ELsaHSoW15)
GTGTTAACCATCCAAGAGAACCTGCACCTAGCCCTCGCGCGGCTGGCCGA
GGCTGTCCGGGAAGAGTTGCACTCTGTCTGTTCGAAGCCGCCCGCGGAGG
AAATGCTGAGGGGTCCTCGGGGAGGAGAACCACCGGGGCGATACTACGGG
GCGTCTACGCGAAAGGTAAACTGCGACCGGGGCTTTGAAAATTGTGGCGA
CCACGTATTATGATAGTGGTAATGGACGTAGCCCAAAAATCACGTCGTTT
TAGTGATGACAGTAGGCGTAGAAAAAAAAACGCGTCTTTAGTTCGAAGAC
CATATCCTGCCGCAAAGGTGACAGACACCATAAGGAACCCTTCCTTACGC
GAGCCCCCCCTCCACCCCCTCAGGACTTTCGCGACTATTTCGACGCCGAA
GAGGAGGAAGTGGCCCGCCGGCTGCAGCCCAAGTCTTACACCTACCTGGG
GGCGCTGCGCGAAGACAGCAAAGCGAAGTACGTGTTCGACCGGACCAGCC
ATGCTCGCAAGGGGTCCCTGGCCGCCCACCTGCGGTAAGTGAGCAGCTTA
CGGCATGGTTATCAGGTCGTTTCTCATGCGTGATATTTAGTTACCTGCCG
TGGCGAGAGGCGTTCGTTCGAAGCGCTTGCGTTGAAAGAAGTCGTGACAC
AGGGAACGGCCGCTCGTTGTGGTCTCTCCGTGCGCCAGCCGGGCTTGCGA
CCAGCTACTGGATATTTACCGGTAAAACGTGACCTAAAGCTTCCAACACC
ACGCACTACAAGCGCAATGATCGCAACTCGTGATTTTGGAGGCCTTTCCT
TCCAACCAACCGGTAGGTAGAGTTTTTTTCTTGCGCTTTTTTATTTTAAA
TTTTTCTTGTTTCTTCCTACTGTATTCAGGGGAGACTACGAGCCTAAAGC
GGAGGGATACCGAGGCACCAACGTGCATGCGGCCACGGACTGGCGGCCGG
CTAACACTTCCCTGGACAGGTGAGGTTGTGCTGCCCGCGTTCCCCATCGA
CCTGTTTCCTGCGCTCGCGGTGTCTACGGAGGAGCTCGGATCCAGGACAG
ATTGCGCAAGAAGCTGCGTCTCCTCTCTCTCCTCTGTATTGATTATGGAA
AAGTTTCTTGAATTGCAAATTAGATTGACAAAAACACGACTGAAAACTGC
CCTTAAATGCAGCGAAAGCTGCAGTGTTTGTTATTACCGCTGAGGCTTCC
TCCGTCTCGAAAGTAGAAATCCATATTGTATAGTCAACGACGACAAAGGC
GCATGTACGACAAACGCGATTTTAAAAGCAGTTCATCACACGCAAGATAT
CATACCCCCCCGTCCTGTTCATCGCTGTCCTCATACCCGCAACAGGTATG
CCTCTTCGGGAAGGGACGTGATGGCGAGAATAGCTGACTCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6318:2296..3689-

>mRNA_L-elsbetiae_contig6318.14959.1 ID=mRNA_L-elsbetiae_contig6318.14959.1|Name=mRNA_L-elsbetiae_contig6318.14959.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig6318:2296..3689- (Laminarionema elsbetiae ELsaHSoW15)
GTGTTAACCATCCAAGAGAACCTGCACCTAGCCCTCGCGCGGCTGGCCGA
GGCTGTCCGGGAAGAGTTGCACTCTGTCTGTTCGAAGCCGCCCGCGGAGG
AAATGCTGAGGGGTCCTCGGGGAGGAGAACCACCGGGGCGATACTACGGG
GCGTCTACGCGAAAGGTGTTAACCATCCAAGAGAACCTGCACCTAGCCCT
CGCGCGGCTGGCCGAGGCTGTCCGGGAAGAGTTGCACTCTGTCTGTTCGA
AGCCGCCCGCGGAGGAAATGCTGAGGGGTCCTCGGGGAGGAGAACCACCG
GGGCGATACTACGGGGCGTCTACGCGAAAGGACTTTCGCGACTATTTCGA
CGCCGAAGAGGAGGAAGTGGCCCGCCGGCTGCAGCCCAAGTCTTACACCT
ACCTGGGGGCGCTGCGCGAAGACAGCAAAGCGAAGTACGTGTTCGACCGG
ACCAGCCATGCTCGCAAGGGGTCCCTGGCCGCCCACCTGCGGACTTTCGC
GACTATTTCGACGCCGAAGAGGAGGAAGTGGCCCGCCGGCTGCAGCCCAA
GTCTTACACCTACCTGGGGGCGCTGCGCGAAGACAGCAAAGCGAAGTACG
TGTTCGACCGGACCAGCCATGCTCGCAAGGGGTCCCTGGCCGCCCACCTG
CGGGGAGACTACGAGCCTAAAGCGGAGGGATACCGAGGCACCAACGTGCA
TGCGGCCACGGACTGGCGGCCGGCTAACACTTCCCTGGACAGGGGAGACT
ACGAGCCTAAAGCGGAGGGATACCGAGGCACCAACGTGCATGCGGCCACG
GACTGGCGGCCGGCTAACACTTCCCTGGACAGGTATGCCTCTTCGGGAAG
GGACGTGATGGCGAGAATAGCTGACTCCGACGTATGCCTCTTCGGGAAGG
GACGTGATGGCGAGAATAGCTGACTCCGAC
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