mRNA_L-elsbetiae_contig6315.14957.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE) HSP 1 Score: 447 bits (1151), Expect = 5.640e-145 Identity = 237/265 (89.43%), Postives = 248/265 (93.58%), Query Frame = 2 Query: 11 NSNECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGG-----AGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQ----MSLLLNLERPQDAVDYWEPGSPLQAQLTSDEVIGVLQQREDFAREDLASLALPESYKG 778 NSNECLVYVNTLEACS FAVRLR+MLERDASAAFGG AGHDAERVMSCLQGLGSTRALF+RAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDP+A ALVEYLR LLEPYRPPGGLSESLFLELLTLVAGYLAKR+EIAL++RLFTQLGGLQLDKDLRC+MGFFTQQAGRGAREPFSRLAQ MSLLLNLERPQDA+DYWEPGSPLQAQLT++EV+ VLQQREDFAREDLASL LPESYKG Sbjct: 634 NSNECLVYVNTLEACSTFAVRLREMLERDASAAFGGXXXXXXXXAGHDAERVMSCLQGLGSTRALFTRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPYAHALVEYLRLLLEPYRPPGGLSESLFLELLTLVAGYLAKRMEIALKKRLFTQLGGLQLDKDLRCVMGFFTQQAGRGAREPFSRLAQASQGMSLLLNLERPQDAMDYWEPGSPLQAQLTANEVVSVLQQREDFAREDLASLVLPESYKG 898
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A836C9B0_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B0_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.870e-40 Identity = 103/246 (41.87%), Postives = 137/246 (55.69%), Query Frame = 2 Query: 23 CLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYWEPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 CLVY+N LEAC A RL L R+ F G GA + +++CL L F + + L N +V++ ++ VSY+L+E QYA NEA DP+A L L LL PY PP GLS + F LL L A+R+E A RR+ F+QLGGLQLDKD+R + ++ G R PF+RL Q++LLL+L+ DA D+W G L+ L + EV VL REDFA E +A L L Sbjct: 284 CLVYLNDLEACGQCAARLGAELVREVPETFQEGRGA----QLLLACLGELSGAADAFDQRSQRSLRHPCNT------DLVTTQPRARAQVSYKLTEAQYAVNEASDPWALELATGLLSLLRPYEPPTGLSAAAFARLLALACECAAQRVEAAARRKRFSQLGGLQLDKDVRALAAAAAERGGPALRAPFARLQQIALLLSLDDVVDAADFWHGGGALRQHLAAGEVKEVLALREDFAPESVAELEL 519
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A1J6I8W7_NICAT (Conserved oligomeric Golgi complex subunit 4 n=7 Tax=Solanaceae TaxID=4070 RepID=A0A1J6I8W7_NICAT) HSP 1 Score: 132 bits (332), Expect = 4.300e-29 Identity = 89/252 (35.32%), Postives = 141/252 (55.95%), Query Frame = 2 Query: 20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 E +N ++ S +A++LR +E + F A D ERV SCL L F +A + LE+ V R+R VL TV + +SY+LSE++YA NE DP+ Q L+ + + +P ++ + + L+ LV ++ KRLE+ + ++ F+QLGGLQLD+D+R ++ +F+ R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT EV VL R DF E +A+L L Sbjct: 510 EIATALNNMDVSSEYALKLRHEIEEQCAEVFP----APADRERVKSCLSELNEMSNGFKKALNIGLEQLVATVTPRIRPVLDTVAT--------ISYELSESEYADNEVNDPWVQRLLHAVESNVAWLQPL--MTANNYDSLVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSYFSNMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRVDFKSEAIAALKL 747
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A175YA48_DAUCS (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YA48_DAUCS) HSP 1 Score: 130 bits (328), Expect = 1.410e-28 Identity = 91/251 (36.25%), Postives = 136/251 (54.18%), Query Frame = 2 Query: 20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQAL---VEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 E +N L+ S +A++LR +E F A D ERV SCL LG F +A +D +E+++ + +R V+ S +SY+LSE +YA NE DP+ Q+L VE L+P + LF+ L V ++ KRLE+ + ++ F+QLGGLQLD+D R ++ F R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT EV VL R DF E +A+L L Sbjct: 514 EVATSLNNLDVSSEYALKLRHEIEEQCLEVFS----APADRERVKSCLSELGEMSNSFKKALNDKMEQLVASVTPRIRPVLDS----VGTISYELSEAEYADNEVNDPWVQSLLHDVETNIAWLQPLMTAN--NYDLFVHL---VIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFNGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRIDFRPEAIAALKL 751
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A2J6KJ81_LACSA (Conserved oligomeric Golgi complex subunit 4 n=8 Tax=Asteraceae TaxID=4210 RepID=A0A2J6KJ81_LACSA) HSP 1 Score: 130 bits (327), Expect = 1.830e-28 Identity = 90/250 (36.00%), Postives = 138/250 (55.20%), Query Frame = 2 Query: 35 VNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQAL---VEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 +N ++ S +A++LR +E + F G D ER+ SCL LG F + + LE V +R+R VL TV + VSY+LSE++YA NE DP+ Q L VE L+P ++ + + + LV ++ KRLE+ + ++ F+QLGGLQLD+D+R ++ F+ R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT EV VL R DF E +A+L L Sbjct: 505 LNNMDVSSEYALKLRHEIEEQCAEVFPTPG----DRERIKSCLSELGEMSNGFKKTLNSSLEHLVGTVTHRIRPVLDTVAT--------VSYELSESEYAENEVNDPWVQRLLHTVETNTSWLQPL-----MTANNYDSFVHLVIDFIVKRLELIMMQKRFSQLGGLQLDRDVRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGMRVDFKPEAIAALKL 737
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: W1NDY2_AMBTC (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1NDY2_AMBTC) HSP 1 Score: 130 bits (327), Expect = 1.850e-28 Identity = 90/252 (35.71%), Postives = 136/252 (53.97%), Query Frame = 2 Query: 20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 E +N ++ S +A++L+ +E + F A D E+V SCL LG F +A S LE+ V RLR L V S +SY+LSE +YA NE DP+ Q L+ + + +P ++ + + L LV ++ KRLE+ + ++ FTQLGGLQLD+D R ++ F+ R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT EV VL R DF E +A+L L Sbjct: 505 EITTALNNMDVSSEYALKLKQEIEEHCAEVFP----APADREKVKSCLSDLGEVSEGFRQALSSGLEQLAASVTPRLRPTLDAVAS--------ISYELSEAEYAENELNDPWVQNLLHSVETSVSWLQP--SMTSNNYDSFLHLVIDFVVKRLEVIMMQKRFTQLGGLQLDRDTRALVSRFSSMTQRTVRDKFARLTQMATVLNLEKVSEILDFWGENAGPMTWRLTPAEVRRVLGLRTDFKPEAIAALRL 742
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A2U1LKY7_ARTAN (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LKY7_ARTAN) HSP 1 Score: 130 bits (326), Expect = 2.250e-28 Identity = 86/246 (34.96%), Postives = 138/246 (56.10%), Query Frame = 2 Query: 35 VNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQAL---VEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 +N ++ S ++++LR +E + F A +D ER+ SCL LG F +A LE+++ + +R V+ S + VSY+LSE +YA NE DP+ Q L VE L+P ++ + + + LV ++ KRLE+ + ++ F+QLGGLQLD+D+R ++ F+ R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT EV VL R DF E +A+L L Sbjct: 472 LNNMDVSSEYSLKLRHEIEEQCAEVFP----APNDRERIKSCLSELGEMSNGFKKALVAGLEQLVGTVTHRIRPVLDS----VATVSYELSEEEYAENEVNDPWVQRLLHAVETNSGWLQPL-----MTSNNYDSFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENAGPMTWRLTPAEVRRVLGMRVDFKPEAIAALKL 704
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: UPI001FB14573 (conserved oligomeric Golgi complex subunit 4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14573) HSP 1 Score: 130 bits (326), Expect = 2.530e-28 Identity = 81/243 (33.33%), Postives = 139/243 (57.20%), Query Frame = 2 Query: 35 VNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 +N ++ S +A++L+ +E + F G D ERV SCL LG F +A + +E+++ + +R ++ + + +SY+LSE +YA NE DP+ Q L+ + + +P ++ + L+ LV ++ KRLE+ + ++ F+QLGGLQLD+D+R ++ FF+ R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT +V VL R DF E +A+L L Sbjct: 518 LNNIDVSSEYALKLKQEIEEQCAEVFPAPG----DRERVKSCLSELGEMNNSFKKALNAGVEQLVASVTPRVRPLLDN----VATISYELSEAEYADNEVNDPWVQRLLHAVETNVAWLQPSMTINN--YDSLIHLVLDFIVKRLEVIMMQKRFSQLGGLQLDRDIRALVSFFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPADVRRVLGLRIDFKPEAIAALKL 750
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A314ZC79_PRUYE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZC79_PRUYE) HSP 1 Score: 126 bits (317), Expect = 4.240e-28 Identity = 86/252 (34.13%), Postives = 137/252 (54.37%), Query Frame = 2 Query: 8 NNSNECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEEVLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 N E +N L+ S + ++L+ +E F A D E+V SCL LG F +A + LE+++ + LR V+ H+G +SY+LSE QYA NE DP+ Q L+ + + +P ++ + + + LV ++ KRLE + ++ F+QLGGLQLD+D R ++ F+ R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT EV VL R DF E +++L L Sbjct: 192 NTGTEIATVLNNLDVSSEYVLKLKHEIEEQCLEVFP----APVDGEKVKSCLSELGDMSNTFKQALNAGLEQLVATVAPRLRPVLD-HVG---TISYELSEAQYADNEVNDPWVQRLLHAVETNVAWLQPL--MTANNYDSFVHLVLDFIVKRLEATMIQKRFSQLGGLQLDRDARALVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLSLRVDFKPEAISALKL 433
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Match: A0A200Q2Q0_9MAGN (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q2Q0_9MAGN) HSP 1 Score: 129 bits (324), Expect = 4.510e-28 Identity = 88/252 (34.92%), Postives = 136/252 (53.97%), Query Frame = 2 Query: 20 ECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMSCLQGLGSTRALFSRAASDCLEE----VLNRLRQVLRTVVSSHLGEKSAVSYQLSENQYAANEAEDPFAQALVEYLRHLLEPYRPPGGLSESLFLELLTLVAGYLAKRLEIALRRRLFTQLGGLQLDKDLRCIMGFFTQQAGRGAREPFSRLAQMSLLLNLERPQDAVDYW-EPGSPLQAQLTSDEVIGVLQQREDFAREDLASLAL 760 E +N ++ S + ++LR +E + F A D ERV SCL LG F +A + LE+ V R+R VL TV +SY+LSE +YA NE DP+ Q L+ + + +P ++ S + + L+ ++ KRLE+ + ++ F+QLGGLQLD+D R ++ F+ R R+ F+RL QM+ +LNLE+ + +D+W E P+ +LT EV VL R DF E +A+L L Sbjct: 508 EIATVLNNMDVSSEYVLKLRHEIEEQCAEVFP----APADRERVKSCLSELGEMSTGFKQALNAGLEQLVATVTPRIRPVLDTV--------GTISYELSEAEYAENEVNDPWVQKLLHAVETNVAWLQP--AMTSSNYDSFVHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSGMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENAGPMTWRLTPAEVRRVLGLRVDFKPEAIAALRL 745 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6315.14957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6315.14957.1 >prot_L-elsbetiae_contig6315.14957.1 ID=prot_L-elsbetiae_contig6315.14957.1|Name=mRNA_L-elsbetiae_contig6315.14957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp MNNSNECLVYVNTLEACSNFAVRLRDMLERDASAAFGGGGGAGHDAERVMback to top mRNA from alignment at L-elsbetiae_contig6315:5469..10051- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6315.14957.1 ID=mRNA_L-elsbetiae_contig6315.14957.1|Name=mRNA_L-elsbetiae_contig6315.14957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4583bp|location=Sequence derived from alignment at L-elsbetiae_contig6315:5469..10051- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6315:5469..10051- >mRNA_L-elsbetiae_contig6315.14957.1 ID=mRNA_L-elsbetiae_contig6315.14957.1|Name=mRNA_L-elsbetiae_contig6315.14957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig6315:5469..10051- (Laminarionema elsbetiae ELsaHSoW15)back to top |