prot_L-elsbetiae_contig631.14951.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig631.14951.1
Unique Nameprot_L-elsbetiae_contig631.14951.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length104
Homology
BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: D7G047_ECTSI (Topo_C_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G047_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.840e-16
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPG 43
            +VFAKTL++KFVWAMNVPPDW+FSYETL NSKQS LDVP  PG
Sbjct:   19 KVFAKTLQNKFVWAMNVPPDWNFSYETLYNSKQSVLDVPRPPG 61          
BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: D7G042_ECTSI (TOPEUc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G042_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.360e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0
Query:    1 QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPGSGKKK 48
            +VFAKTL++KFVWAMNVPPDW+FSYETL NSKQS LDVP  PG    K
Sbjct:  937 RVFAKTLQNKFVWAMNVPPDWNFSYETLYNSKQSVLDVPRPPGGASPK 984          
BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: A0A6H5K298_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K298_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.840e-12
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    4 AKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPG 43
            ++ LRDKF WAMNVPPDW+FSYETL NSKQS LDVP  PG
Sbjct:   93 SRRLRDKFAWAMNVPPDWNFSYETLYNSKQSVLDVPRPPG 132          
BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Match: A0A836C9X0_9STRA (DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.510e-8
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    1 QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVP 39
            ++FAKTLRDKFVWAMNVPPDW F +ETL      + D P
Sbjct:  631 RIFAKTLRDKFVWAMNVPPDWRFDFETLRAVTAESSDEP 669          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig631.14951.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G047_ECTSI1.840e-1681.40Topo_C_assoc domain-containing protein n=1 Tax=Ect... [more]
D7G042_ECTSI3.360e-1575.00TOPEUc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K298_9PHAE1.840e-1277.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9X0_9STRA6.510e-864.10DNA topoisomerase I n=1 Tax=Tribonema minus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025834Topoisomerase I C-terminal domainPFAMPF14370Topo_C_assoccoord: 2..23
e-value: 4.0E-6
score: 26.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig631contigL-elsbetiae_contig631:221..532 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig631.14951.1mRNA_L-elsbetiae_contig631.14951.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig631 221..532 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig631.14951.1 ID=prot_L-elsbetiae_contig631.14951.1|Name=mRNA_L-elsbetiae_contig631.14951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
QVFAKTLRDKFVWAMNVPPDWSFSYETLLNSKQSALDVPPLPGSGKKKAA
ASAAKATPKAAAAAAAAAAAKPAAATASPKVGTEARANPPSGAKGKGKAK
EEDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025834TopoI_C_dom