mRNA_L-elsbetiae_contig6309.14949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6309.14949.1
Unique NamemRNA_L-elsbetiae_contig6309.14949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.350e-38
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    4 LAGNLQKEIQKAVLPIIHYGLDLRTCKVSGRKYLWVHISYVDSNFALQHALLAVKHYCAPSAAVPGSVKKASETLFIIFRSTLAEFGIRLSDLAGGTVDSSS 309
            + GN+Q+EI KA LPIIHYGLDL TCKVSGRKYL VH+ YVDSNF+L+HAL++VKHY APS  + G+ +KASE LF IFR+TLAE+GI+LSDLAGGT DS S
Sbjct:  205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHY-APSTEIQGT-EKASEILFTIFRATLAEYGIKLSDLAGGTTDSGS 304
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BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.070e-30
Identity = 60/95 (63.16%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   25 EIQKAVLPIIHYGLDLRTCKVSGRKYLWVHISYVDSNFALQHALLAVKHYCAPSAAVPGSVKKASETLFIIFRSTLAEFGIRLSDLAGGTVDSSS 309
            EI++A LPI+HYG+DL  CK++G KY+  H+ YV+SNF LQ+ALL+VKHY APSAAV  +  KASE LFI+F+S L EFG+++SDLAGGT DS S
Sbjct:    4 EIERAPLPIVHYGIDLWQCKITGLKYIDGHVCYVNSNFELQYALLSVKHY-APSAAVQVT-DKASEILFIVFKSVLREFGVKISDLAGGTTDSGS 96
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BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.140e-30
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    4 LAGNLQKEIQKAVLPIIHYGLDLRTCKVSGRKYLWVHISYVDSNFALQHALLAVKHYCAPSAAVPGSVKKASETLFIIFRSTLAEFGIRLSDLAGGTVDSSS 309
            + GN+  EI++A LPI+HYG+DL  CK++G KY+ VH+ YV+SN  LQH LLAVKHY APSAAV  +  KASE LF +F S L EFG+++SDLAGGT DS S
Sbjct:  224 VVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHY-APSAAVQAT-GKASEILFNVFNSVLREFGVKISDLAGGTTDSGS 323
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BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.770e-21
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 VLAGNLQKEIQKAVLPIIHYGLDLRTCKVSGRKYLWVHISYVDSNFALQHALLAVKHYCAPSAAVPGSVKKASETLFIIFRSTLAEFGIRLSDLAGGTVDSSS 309
            V+ GN+ +E+++A LPI+H+ +D+ T K SGRK+L +H+ YVD+NF L+ ALL++K Y AP     G  ++AS+ LF I +S L EFG++ S LA GT DS S
Sbjct:  240 VVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRY-APDQGSLGD-QRASDVLFQIMKSVLEEFGLKPSHLASGTTDSGS 340
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BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.100e-9
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  163 VKHYCAPSAAVPGSVKKASETLFIIFRSTLAEFGIRLSDLAGGTVDSSS 309
            VKHY APSAAV  S +KAS  LF +FRS LAEFGI+LSDLAGGT DS S
Sbjct:   82 VKHY-APSAAVQAS-EKASGVLFTVFRSLLAEFGIKLSDLAGGTTDSGS 128
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BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Match: A0A6H5JXM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.630e-7
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   10 GNLQKEIQKAVLPIIHYGLDLRTCKVSGRKYLWVH 114
            GN+ +EI+KA LPI+HYG+DL TCK SG K++ VH
Sbjct:   36 GNMSEEIKKAPLPIVHYGVDLWTCKTSGMKFIDVH 70
[Close]
BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.360e-5
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   10 GNLQKEIQKAVLPIIHYGLDLRTCKVSGRKYL 105
            GN+ +EI+KA LPI+HYG+DL TCK SG K++
Sbjct:   56 GNMLEEIKKAPLPIVHYGVDLWTCKTSGMKFI 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6309.14949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JYQ2_9PHAE1.350e-3871.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN28_9PHAE1.070e-3063.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE5.140e-3060.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE5.770e-2148.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE8.100e-973.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXM2_9PHAE4.630e-762.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT2_9PHAE8.360e-562.50Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6309contigL-elsbetiae_contig6309:2934..3828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.8634758-CDS-L-elsbetiae_contig6309:2933..30951622816695.8634758-CDS-L-elsbetiae_contig6309:2933..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6309 2934..3095 +
1691683746.700876-CDS-L-elsbetiae_contig6309:2933..30951691683746.700876-CDS-L-elsbetiae_contig6309:2933..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6309 2934..3095 +
1622816695.88058-CDS-L-elsbetiae_contig6309:3667..38261622816695.88058-CDS-L-elsbetiae_contig6309:3667..3826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6309 3668..3826 +
1691683746.7152455-CDS-L-elsbetiae_contig6309:3667..38261691683746.7152455-CDS-L-elsbetiae_contig6309:3667..3826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6309 3668..3826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6309.14949.1prot_L-elsbetiae_contig6309.14949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6309 2934..3826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6309.14949.1

>prot_L-elsbetiae_contig6309.14949.1 ID=prot_L-elsbetiae_contig6309.14949.1|Name=mRNA_L-elsbetiae_contig6309.14949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
VLAGNLQKEIQKAVLPIIHYGLDLRTCKVSGRKYLWVHISYVDSNFALQH
ALLAVKHYCAPSAAVPGSVKKASETLFIIFRSTLAEFGIRLSDLAGGTVD
SSSGPEL
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mRNA from alignment at L-elsbetiae_contig6309:2934..3828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6309.14949.1 ID=mRNA_L-elsbetiae_contig6309.14949.1|Name=mRNA_L-elsbetiae_contig6309.14949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=895bp|location=Sequence derived from alignment at L-elsbetiae_contig6309:2934..3828+ (Laminarionema elsbetiae ELsaHSoW15)
GTACTTGCCGGGAACTTGCAGAAAGAAATTCAGAAGGCAGTGCTGCCCAT
CATCCACTACGGGCTCGACCTGCGCACATGCAAGGTTTCTGGGCGCAAGT
ACCTCTGGGTTCACATCTCCTACGTTGACAGCAACTTCGCCCTCCAACAC
GCTCTGCTTGCTGTAAGTGAGGTTGAATAGACCCCGGCCCCTCCTGGCTT
GCCCTTCCCCGGCGCAGTGCTCGCACTGTAGCATTTATGTTTTACGCACG
TACAAGCAGCAGACGTGATGTTTTCATGAAAGTTAATAGTCTTAGTCTAT
ACATACCTTTTTCAGATAGTGGTAGCCGCGAGGATTCTTTTCATGGTGCG
GTACCCCTTGTACGATTTTGTTCCGCGCCCCACAAAAAAAAGTGGAATTT
TTTAAGCCAAGGCTGCAATCTCTACGTATGTATATCTTCTATCGAGAGTT
GACACTTTCCAGGCAATTGTGGTATTGCATGCCGCTACCGCTGCGACATT
ATTGTGCACGCTGGAAACATGCCCTGTGGCGGGGGGATATCGCACCGAAG
AACGCGAGCAGTTCCAGGGTCTGGGTGCTGGGCACTACTCGATGTACGCA
GGCCGAGTTCTTGCCGTTCTGCGCCTGCTTGCTTTGATTTTTTTCCCTTT
TTCATCCTGCCGTGCACCACGTCAACCTCTTTCTTGGCTCTTTCCCGTCA
CCCCCTCCCCCCCCCCGGTACATGTTTCGAGCAGGTGAAGCACTACTGTG
CCCCTTCGGCGGCGGTTCCGGGAAGCGTGAAGAAGGCCAGCGAAACCCTA
TTCATCATCTTCCGGTCGACCCTGGCGGAGTTCGGCATCAGGCTGTCTGA
CCTTGCTGGTGGAACCGTGGACAGCAGCAGCGGCCCCGAGCTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6309:2934..3828+

>mRNA_L-elsbetiae_contig6309.14949.1 ID=mRNA_L-elsbetiae_contig6309.14949.1|Name=mRNA_L-elsbetiae_contig6309.14949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig6309:2934..3828+ (Laminarionema elsbetiae ELsaHSoW15)
GTACTTGCCGGGAACTTGCAGAAAGAAATTCAGAAGGCAGTGCTGCCCAT
CATCCACTACGGGCTCGACCTGCGCACATGCAAGGTTTCTGGGCGCAAGT
ACCTCTGGGTTCACATCTCCTACGTTGACAGCAACTTCGCCCTCCAACAC
GCTCTGCTTGCTGTACTTGCCGGGAACTTGCAGAAAGAAATTCAGAAGGC
AGTGCTGCCCATCATCCACTACGGGCTCGACCTGCGCACATGCAAGGTTT
CTGGGCGCAAGTACCTCTGGGTTCACATCTCCTACGTTGACAGCAACTTC
GCCCTCCAACACGCTCTGCTTGCTGTGAAGCACTACTGTGCCCCTTCGGC
GGCGGTTCCGGGAAGCGTGAAGAAGGCCAGCGAAACCCTATTCATCATCT
TCCGGTCGACCCTGGCGGAGTTCGGCATCAGGCTGTCTGACCTTGCTGGT
GGAACCGTGGACAGCAGCAGCGGCCCCGAGCTCGTGAAGCACTACTGTGC
CCCTTCGGCGGCGGTTCCGGGAAGCGTGAAGAAGGCCAGCGAAACCCTAT
TCATCATCTTCCGGTCGACCCTGGCGGAGTTCGGCATCAGGCTGTCTGAC
CTTGCTGGTGGAACCGTGGACAGCAGCAGCGGCCCCGAGCTC
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