mRNA_L-elsbetiae_contig6307.14946.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6307.14946.1
Unique NamemRNA_L-elsbetiae_contig6307.14946.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6307.14946.1 vs. uniprot
Match: D7FPK8_ECTSI (Putative membrane transporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK8_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 9.490e-6
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:    3 DDFGLSMCLLVAFPFLVAAAAIAYRLPDPPAPES 104
            DDFGLSMCL+VA PFLVAA+AIAYRLP P  P S
Sbjct:  414 DDFGLSMCLVVACPFLVAASAIAYRLPGPATPPS 447
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BLAST of mRNA_L-elsbetiae_contig6307.14946.1 vs. uniprot
Match: A0A6H5KIX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.280e-5
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:    3 DDFGLSMCLLVAFPFLVAAAAIAYRLPDPPAPES 104
            DDFGLSMCL+VA PFLVAAAAI+Y LP P  P S
Sbjct:  385 DDFGLSMCLVVACPFLVAAAAISYHLPGPATPPS 418
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6307.14946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPK8_ECTSI9.490e-679.41Putative membrane transporter (ISS) n=1 Tax=Ectoca... [more]
A0A6H5KIX3_9PHAE4.280e-576.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6307contigL-elsbetiae_contig6307:10413..11265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size518
Cds size456
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6307.14946.1prot_L-elsbetiae_contig6307.14946.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6307 10474..11265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.4814355-UTR-L-elsbetiae_contig6307:10412..104731622816695.4814355-UTR-L-elsbetiae_contig6307:10412..10473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6307 10413..10473 -
1691683746.453628-UTR-L-elsbetiae_contig6307:10412..104731691683746.453628-UTR-L-elsbetiae_contig6307:10412..10473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6307 10413..10473 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.4931927-CDS-L-elsbetiae_contig6307:10473..107731622816695.4931927-CDS-L-elsbetiae_contig6307:10473..10773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6307 10474..10773 -
1691683746.4627638-CDS-L-elsbetiae_contig6307:10473..107731691683746.4627638-CDS-L-elsbetiae_contig6307:10473..10773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6307 10474..10773 -
1622816695.5097766-CDS-L-elsbetiae_contig6307:11109..112651622816695.5097766-CDS-L-elsbetiae_contig6307:11109..11265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6307 11110..11265 -
1691683746.4729917-CDS-L-elsbetiae_contig6307:11109..112651691683746.4729917-CDS-L-elsbetiae_contig6307:11109..11265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6307 11110..11265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6307.14946.1

>prot_L-elsbetiae_contig6307.14946.1 ID=prot_L-elsbetiae_contig6307.14946.1|Name=mRNA_L-elsbetiae_contig6307.14946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
LTTSGCPCACSWRFLSSWRRRQLRIGCRIPRRLNLLARLPLWAIKATRAT
STSNYRWPRVPLRLLGEALHRRLPGLVRLIGVALLYRANRSLPSRSFNLS
QQTPATTKATRSSRCSWQRRVVVQEKVPTLCPSSPRISIFSLFSVAIVSI
V*
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mRNA from alignment at L-elsbetiae_contig6307:10413..11265-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6307.14946.1 ID=mRNA_L-elsbetiae_contig6307.14946.1|Name=mRNA_L-elsbetiae_contig6307.14946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=853bp|location=Sequence derived from alignment at L-elsbetiae_contig6307:10413..11265- (Laminarionema elsbetiae ELsaHSoW15)
CTGACGACTTCGGGTTGTCCATGTGCCTGCTCGTGGCGTTTCCTTTCCTC
GTGGCGGCGGCGGCAATTGCGTATCGGCTGCCGGATCCCCCGGCGCCTGA
ATCTCTTGGCGCGCCTCCCTCTGTGGGCGATCAAGGCGACAAGAGCGACA
AGCACGGTGAGTTTTGGATACGTTTTTCAACCCACCTGTGCGGGTGGGAA
ACCCGAAAGGTTCGAGGTCGCCTGGGTGTTGCTTGCTCAGTCACTAGATA
CATATGTAGACCGTTACACCATGCACCGGATTTCGTACAGATGCTTGCGG
CTTGTGCAGCATGCATGCAGCCACGTCCACACGGTGTGAGTGCTCTTTTG
TCCTTGCAGCATTTGTCATGCCCTGGTCTCTTAGTGTTTCCTATCACTAC
TATTTTTGTACGGACCGAAGAAAGTGGGAAGAAGTCGGATTGTGGACTTT
TCAAGCCGCCCCCTACCCCTTTCCGACGGACTCAAACGGCAGAGCAACTA
CCGGTGGCCCCGAGTGCCTCTACGACTACTCGGGGAGGCGCTGCACCGGC
GGCTCCCAGGGCTGGTACGGCTGATCGGAGTGGCTCTGCTGTACAGGGCA
AACCGCTCGCTACCGTCCCGGTCGTTCAACCTATCTCAACAGACGCCAGC
GACGACGAAAGCAACCAGATCCTCCCGGTGTAGTTGGCAGCGAAGAGTGG
TGGTACAAGAAAAAGTTCCGACTCTCTGTCCGTCTTCCCCGAGAATAAGT
ATTTTCTCTCTTTTTTCCGTAGCTATTGTATCCATAGTCTAGAGTTTTTA
CAGGGCGTAAACATGTTTTGGACTGGTGTCACCGGTCACGCGTCGGCCAG
CAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6307:10413..11265-

>mRNA_L-elsbetiae_contig6307.14946.1 ID=mRNA_L-elsbetiae_contig6307.14946.1|Name=mRNA_L-elsbetiae_contig6307.14946.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig6307:10413..11265- (Laminarionema elsbetiae ELsaHSoW15)
CTGACGACTTCGGGTTGTCCATGTGCCTGCTCGTGGCGTTTCCTTTCCTC
GTGGCGGCGGCGGCAATTGCGTATCGGCTGCCGGATCCCCCGGCGCCTGA
ATCTCTTGGCGCGCCTCCCTCTGTGGGCGATCAAGGCGACAAGAGCGACA
AGCACGCTGACGACTTCGGGTTGTCCATGTGCCTGCTCGTGGCGTTTCCT
TTCCTCGTGGCGGCGGCGGCAATTGCGTATCGGCTGCCGGATCCCCCGGC
GCCTGAATCTCTTGGCGCGCCTCCCTCTGTGGGCGATCAAGGCGACAAGA
GCGACAAGCACGAGCAACTACCGGTGGCCCCGAGTGCCTCTACGACTACT
CGGGGAGGCGCTGCACCGGCGGCTCCCAGGGCTGGTACGGCTGATCGGAG
TGGCTCTGCTGTACAGGGCAAACCGCTCGCTACCGTCCCGGTCGTTCAAC
CTATCTCAACAGACGCCAGCGACGACGAAAGCAACCAGATCCTCCCGGTG
TAGTTGGCAGCGAAGAGTGGTGGTACAAGAAAAAGTTCCGACTCTCTGTC
CGTCTTCCCCGAGAATAAGTATTTTCTCTCTTTTTTCCGTAGCTATTGTA
TCCATAGTCTAGAGCAACTACCGGTGGCCCCGAGTGCCTCTACGACTACT
CGGGGAGGCGCTGCACCGGCGGCTCCCAGGGCTGGTACGGCTGATCGGAG
TGGCTCTGCTGTACAGGGCAAACCGCTCGCTACCGTCCCGGTCGTTCAAC
CTATCTCAACAGACGCCAGCGACGACGAAAGCAACCAGATCCTCCCGGTG
TAGTTGGCAGCGAAGAGTGGTGGTACAAGAAAAAGTTCCGACTCTCTGTC
CGTCTTCCCCGAGAATAAGTATTTTCTCTCTTTTTTCCGTAGCTATTGTA
TCCATAGTCTAG
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